data_A1ATE
#
_chem_comp.id A1ATE
_chem_comp.name "(3S,5R)-1-[4-(1-carbamimidoyl-L-prolyl)piperazine-1-carbonyl]-N-(4-chloro-3-fluorophenyl)-5-(hydroxymethyl)piperidine-3-carboxamide"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C24 H33 Cl F N7 O4"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2024-05-28
_chem_comp.pdbx_modified_date 2025-03-28
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 538.015
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code A1ATE
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 9BXY
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
_chem_comp.pdbx_pcm ?
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
A1ATE C10 C1 C 0 1 N N N N N N -4.126 15.987 -13.914 4.006 -0.797 -0.310 C10 A1ATE 1
A1ATE CG C2 C 0 1 N N S N N N -2.512 10.420 -6.751 -6.707 1.296 -0.159 CG A1ATE 2
A1ATE ND1 N1 N 0 1 N N N N N N -2.527 9.137 -6.481 -8.006 0.613 -0.088 ND1 A1ATE 3
A1ATE CD2 C3 C 0 1 N N N N N N -2.631 11.259 -5.328 -6.929 2.753 0.301 CD2 A1ATE 4
A1ATE CE1 C4 C 0 1 N N N N N N -3.033 10.436 -4.417 -8.448 2.963 0.067 CE1 A1ATE 5
A1ATE CE2 C5 C 0 1 N N N N N N -2.502 9.064 -4.900 -9.014 1.564 0.417 CE2 A1ATE 6
A1ATE CZ C6 C 0 1 N N N N N N -2.535 7.975 -7.408 -8.243 -0.696 -0.435 CZ A1ATE 7
A1ATE NH1 N2 N 0 1 N N N N N N -2.549 8.097 -8.670 -7.267 -1.442 -0.870 NH1 A1ATE 8
A1ATE NH2 N3 N 0 1 N N N N N N -2.537 6.807 -6.923 -9.510 -1.218 -0.322 NH2 A1ATE 9
A1ATE C01 C7 C 0 1 N N N N N N -1.178 10.716 -7.470 -5.719 0.616 0.754 C01 A1ATE 10
A1ATE C03 C8 C 0 1 N N N N N N 0.180 11.684 -9.408 -3.422 0.158 1.467 C03 A1ATE 11
A1ATE C04 C9 C 0 1 N N N N N N 0.425 13.101 -9.905 -2.433 -0.632 0.601 C04 A1ATE 12
A1ATE C06 C10 C 0 1 N N N N N N -0.796 15.202 -10.401 -0.618 0.445 -0.639 C06 A1ATE 13
A1ATE C08 C11 C 0 1 N N N N N N -3.356 15.860 -11.264 1.680 -0.017 0.069 C08 A1ATE 14
A1ATE C09 C12 C 0 1 N N S N N N -3.083 16.137 -12.759 2.553 -1.105 -0.565 C09 A1ATE 15
A1ATE C13 C13 C 0 1 Y N N N N N -4.258 15.768 -16.466 5.859 0.691 -0.436 C13 A1ATE 16
A1ATE C14 C14 C 0 1 Y N N N N N -5.637 15.638 -16.445 6.826 -0.303 -0.350 C14 A1ATE 17
A1ATE C15 C15 C 0 1 Y N N N N N -6.308 15.509 -17.631 8.130 0.030 -0.031 C15 A1ATE 18
A1ATE C17 C16 C 0 1 Y N N N N N -5.607 15.500 -18.823 8.470 1.353 0.202 C17 A1ATE 19
A1ATE C19 C17 C 0 1 Y N N N N N -4.238 15.629 -18.842 7.508 2.343 0.117 C19 A1ATE 20
A1ATE C20 C18 C 0 1 Y N N N N N -3.558 15.768 -17.653 6.205 2.016 -0.208 C20 A1ATE 21
A1ATE C21 C19 C 0 1 N N N N N N -2.638 17.577 -12.937 2.202 -2.460 0.055 C21 A1ATE 22
A1ATE C22 C20 C 0 1 N N R N N N -1.443 18.082 -12.193 0.735 -2.790 -0.232 C22 A1ATE 23
A1ATE C23 C21 C 0 1 N N N N N N -1.486 17.492 -10.751 -0.158 -1.721 0.405 C23 A1ATE 24
A1ATE C25 C22 C 0 1 N N N N N N -1.880 12.882 -10.622 -2.914 0.904 -1.351 C25 A1ATE 25
A1ATE C26 C23 C 0 1 N N N N N N -2.242 11.993 -9.445 -3.904 1.694 -0.486 C26 A1ATE 26
A1ATE C27 C24 C 0 1 N N N N N N -1.278 19.604 -11.878 0.395 -4.159 0.360 C27 A1ATE 27
A1ATE F16 F1 F 0 1 N N N N N N -7.654 15.405 -17.611 9.071 -0.935 0.054 F16 A1ATE 28
A1ATE N02 N4 N 0 1 N N N N N N -1.091 11.450 -8.742 -4.397 0.815 0.585 N02 A1ATE 29
A1ATE N05 N5 N 0 1 N N N N N N -0.788 13.759 -10.316 -1.940 0.246 -0.469 N05 A1ATE 30
A1ATE N07 N6 N 0 1 N N N N N N -1.918 16.074 -10.764 0.269 -0.400 -0.075 N07 A1ATE 31
A1ATE N12 N7 N 0 1 N N N N N N -3.508 15.907 -15.247 4.538 0.357 -0.759 N12 A1ATE 32
A1ATE O11 O1 O 0 1 N N N N N N -5.285 15.946 -13.725 4.694 -1.584 0.305 O11 A1ATE 33
A1ATE O24 O2 O 0 1 N N N N N N 0.231 15.699 -10.096 -0.224 1.387 -1.300 O24 A1ATE 34
A1ATE O27 O3 O 0 1 N N N N N N -0.174 10.320 -6.982 -6.114 -0.112 1.640 O27 A1ATE 35
A1ATE O28 O4 O 0 1 N N N N N N -0.020 19.724 -11.226 -0.939 -4.518 -0.007 O28 A1ATE 36
A1ATE CL1 CL1 CL 0 0 N N N N N N -6.428 15.314 -20.389 10.108 1.769 0.603 CL1 A1ATE 37
A1ATE H1 H1 H 0 1 N N N N N N -3.347 10.730 -7.396 -6.337 1.284 -1.184 H1 A1ATE 38
A1ATE H2 H2 H 0 1 N N N N N N -1.649 11.671 -5.053 -6.682 2.865 1.357 H2 A1ATE 39
A1ATE H3 H3 H 0 1 N N N N N N -3.355 12.080 -5.437 -6.345 3.443 -0.308 H3 A1ATE 40
A1ATE H4 H4 H 0 1 N N N N N N -2.608 10.698 -3.437 -8.845 3.724 0.738 H4 A1ATE 41
A1ATE H5 H5 H 0 1 N N N N N N -4.131 10.430 -4.351 -8.651 3.219 -0.973 H5 A1ATE 42
A1ATE H6 H6 H 0 1 N N N N N N -3.152 8.252 -4.542 -9.969 1.406 -0.083 H6 A1ATE 43
A1ATE H7 H7 H 0 1 N N N N N N -1.476 8.899 -4.538 -9.127 1.460 1.496 H7 A1ATE 44
A1ATE H8 H8 H 0 1 N N N N N N -2.554 9.056 -8.954 -6.374 -1.073 -0.950 H8 A1ATE 45
A1ATE H9 H9 H 0 1 N N N N N N -2.533 6.677 -5.931 -10.236 -0.663 0.003 H9 A1ATE 46
A1ATE H10 H10 H 0 1 N N N N N N -2.542 6.013 -7.531 -9.677 -2.142 -0.566 H10 A1ATE 47
A1ATE H11 H11 H 0 1 N N N N N N 0.234 11.010 -10.275 -3.941 -0.522 2.142 H11 A1ATE 48
A1ATE H12 H12 H 0 1 N N N N N N 0.982 11.433 -8.698 -2.887 0.911 2.045 H12 A1ATE 49
A1ATE H13 H13 H 0 1 N N N N N N 1.112 13.060 -10.763 -1.596 -0.966 1.215 H13 A1ATE 50
A1ATE H14 H14 H 0 1 N N N N N N 0.885 13.684 -9.094 -2.935 -1.496 0.167 H14 A1ATE 51
A1ATE H15 H15 H 0 1 N N N N N N -4.064 16.579 -10.826 1.926 0.079 1.126 H15 A1ATE 52
A1ATE H16 H16 H 0 1 N N N N N N -3.715 14.836 -11.085 1.854 0.933 -0.435 H16 A1ATE 53
A1ATE H17 H17 H 0 1 N N N N N N -2.226 15.507 -13.038 2.371 -1.138 -1.639 H17 A1ATE 54
A1ATE H18 H18 H 0 1 N N N N N N -6.174 15.638 -15.508 6.560 -1.333 -0.532 H18 A1ATE 55
A1ATE H19 H19 H 0 1 N N N N N N -3.702 15.621 -19.780 7.775 3.373 0.300 H19 A1ATE 56
A1ATE H20 H20 H 0 1 N N N N N N -2.483 15.876 -17.651 5.455 2.789 -0.274 H20 A1ATE 57
A1ATE H21 H21 H 0 1 N N N N N N -2.429 17.716 -14.008 2.839 -3.232 -0.376 H21 A1ATE 58
A1ATE H22 H22 H 0 1 N N N N N N -3.487 18.212 -12.644 2.361 -2.419 1.133 H22 A1ATE 59
A1ATE H23 H23 H 0 1 N N N N N N -0.528 17.727 -12.689 0.571 -2.807 -1.309 H23 A1ATE 60
A1ATE H24 H24 H 0 1 N N N N N N -0.482 17.557 -10.307 -1.196 -1.895 0.122 H24 A1ATE 61
A1ATE H25 H25 H 0 1 N N N N N N -2.194 18.077 -10.145 -0.064 -1.765 1.490 H25 A1ATE 62
A1ATE H26 H26 H 0 1 N N N N N N -2.757 13.488 -10.892 -3.452 0.151 -1.927 H26 A1ATE 63
A1ATE H27 H27 H 0 1 N N N N N N -1.597 12.246 -11.474 -2.395 1.584 -2.027 H27 A1ATE 64
A1ATE H28 H28 H 0 1 N N N N N N -2.835 12.585 -8.733 -3.400 2.556 -0.049 H28 A1ATE 65
A1ATE H29 H29 H 0 1 N N N N N N -2.848 11.154 -9.818 -4.740 2.028 -1.099 H29 A1ATE 66
A1ATE H30 H30 H 0 1 N N N N N N -1.287 20.192 -12.808 1.091 -4.904 -0.025 H30 A1ATE 67
A1ATE H31 H31 H 0 1 N N N N N N -2.087 19.950 -11.218 0.473 -4.115 1.446 H31 A1ATE 68
A1ATE H32 H32 H 0 1 N N N N N N -2.511 15.952 -15.309 4.007 0.956 -1.306 H32 A1ATE 69
A1ATE H33 H33 H 0 1 N N N N N N 0.138 20.635 -11.007 -1.223 -5.377 0.334 H33 A1ATE 70
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
A1ATE CL1 C17 SING N N 1
A1ATE C19 C17 DOUB Y N 2
A1ATE C19 C20 SING Y N 3
A1ATE C17 C15 SING Y N 4
A1ATE C20 C13 DOUB Y N 5
A1ATE C15 F16 SING N N 6
A1ATE C15 C14 DOUB Y N 7
A1ATE C13 C14 SING Y N 8
A1ATE C13 N12 SING N N 9
A1ATE N12 C10 SING N N 10
A1ATE C10 O11 DOUB N N 11
A1ATE C10 C09 SING N N 12
A1ATE C21 C09 SING N N 13
A1ATE C21 C22 SING N N 14
A1ATE C09 C08 SING N N 15
A1ATE C22 C27 SING N N 16
A1ATE C22 C23 SING N N 17
A1ATE C27 O28 SING N N 18
A1ATE C08 N07 SING N N 19
A1ATE N07 C23 SING N N 20
A1ATE N07 C06 SING N N 21
A1ATE C25 N05 SING N N 22
A1ATE C25 C26 SING N N 23
A1ATE C06 N05 SING N N 24
A1ATE C06 O24 DOUB N N 25
A1ATE N05 C04 SING N N 26
A1ATE C04 C03 SING N N 27
A1ATE C26 N02 SING N N 28
A1ATE C03 N02 SING N N 29
A1ATE N02 C01 SING N N 30
A1ATE NH1 CZ DOUB N N 31
A1ATE C01 O27 DOUB N N 32
A1ATE C01 CG SING N N 33
A1ATE CZ NH2 SING N N 34
A1ATE CZ ND1 SING N N 35
A1ATE CG ND1 SING N N 36
A1ATE CG CD2 SING N N 37
A1ATE ND1 CE2 SING N N 38
A1ATE CD2 CE1 SING N N 39
A1ATE CE2 CE1 SING N N 40
A1ATE CG H1 SING N N 41
A1ATE CD2 H2 SING N N 42
A1ATE CD2 H3 SING N N 43
A1ATE CE1 H4 SING N N 44
A1ATE CE1 H5 SING N N 45
A1ATE CE2 H6 SING N N 46
A1ATE CE2 H7 SING N N 47
A1ATE NH1 H8 SING N N 48
A1ATE NH2 H9 SING N N 49
A1ATE NH2 H10 SING N N 50
A1ATE C03 H11 SING N N 51
A1ATE C03 H12 SING N N 52
A1ATE C04 H13 SING N N 53
A1ATE C04 H14 SING N N 54
A1ATE C08 H15 SING N N 55
A1ATE C08 H16 SING N N 56
A1ATE C09 H17 SING N N 57
A1ATE C14 H18 SING N N 58
A1ATE C19 H19 SING N N 59
A1ATE C20 H20 SING N N 60
A1ATE C21 H21 SING N N 61
A1ATE C21 H22 SING N N 62
A1ATE C22 H23 SING N N 63
A1ATE C23 H24 SING N N 64
A1ATE C23 H25 SING N N 65
A1ATE C25 H26 SING N N 66
A1ATE C25 H27 SING N N 67
A1ATE C26 H28 SING N N 68
A1ATE C26 H29 SING N N 69
A1ATE C27 H30 SING N N 70
A1ATE C27 H31 SING N N 71
A1ATE N12 H32 SING N N 72
A1ATE O28 H33 SING N N 73
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
A1ATE SMILES ACDLabs 12.01 "O=C(N1CC(CC(CO)C1)C(=O)Nc1ccc(Cl)c(F)c1)N1CCN(CC1)C(=O)C1CCCN1C(=N)N"
A1ATE InChI InChI 1.06 "InChI=1S/C24H33ClFN7O4/c25-18-4-3-17(11-19(18)26)29-21(35)16-10-15(14-34)12-32(13-16)24(37)31-8-6-30(7-9-31)22(36)20-2-1-5-33(20)23(27)28/h3-4,11,15-16,20,34H,1-2,5-10,12-14H2,(H3,27,28)(H,29,35)/t15-,16+,20+/m1/s1"
A1ATE InChIKey InChI 1.06 LGQFHULBQDPCKS-GUXCAODWSA-N
A1ATE SMILES_CANONICAL CACTVS 3.385 "NC(=N)N1CCC[C@H]1C(=O)N2CCN(CC2)C(=O)N3C[C@H](CO)C[C@@H](C3)C(=O)Nc4ccc(Cl)c(F)c4"
A1ATE SMILES CACTVS 3.385 "NC(=N)N1CCC[CH]1C(=O)N2CCN(CC2)C(=O)N3C[CH](CO)C[CH](C3)C(=O)Nc4ccc(Cl)c(F)c4"
A1ATE SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[H]/N=C(\N)/N1CCC[C@H]1C(=O)N2CCN(CC2)C(=O)N3C[C@@H](C[C@@H](C3)C(=O)Nc4ccc(c(c4)F)Cl)CO"
A1ATE SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(c(cc1NC(=O)C2CC(CN(C2)C(=O)N3CCN(CC3)C(=O)C4CCCN4C(=N)N)CO)F)Cl"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
A1ATE "SYSTEMATIC NAME" ACDLabs 12.01 "(3S,5R)-1-[4-(1-carbamimidoyl-L-prolyl)piperazine-1-carbonyl]-N-(4-chloro-3-fluorophenyl)-5-(hydroxymethyl)piperidine-3-carboxamide"
A1ATE "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(3~{S},5~{R})-1-[4-[(2~{S})-1-carbamimidoylpyrrolidin-2-yl]carbonylpiperazin-1-yl]carbonyl-~{N}-(4-chloranyl-3-fluoranyl-phenyl)-5-(hydroxymethyl)piperidine-3-carboxamide"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
A1ATE "Create component" 2024-05-28 RCSB
A1ATE "Initial release" 2025-04-02 RCSB
#