data_A1ATK
#
_chem_comp.id A1ATK
_chem_comp.name "(3S)-1-(4-L-arginylpiperazine-1-carbonyl)-N-(4-chloro-3-fluorophenyl)piperidine-3-carboxamide"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C23 H34 Cl F N8 O3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2024-05-29
_chem_comp.pdbx_modified_date 2025-03-28
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 525.019
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code A1ATK
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 9BXD
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
_chem_comp.pdbx_pcm ?
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
A1ATK O O1 O 0 1 N N N N N N 1.011 11.340 -7.970 5.778 3.478 0.637 O A1ATK 1
A1ATK C10 C1 C 0 1 N N N N N N -3.137 17.450 -14.783 -3.880 -0.607 0.451 C10 A1ATK 2
A1ATK N N1 N 0 1 N N N N N N -0.518 9.359 -7.642 7.284 2.210 -1.148 N A1ATK 3
A1ATK CA C2 C 0 1 N N S N N N -1.226 10.622 -7.666 6.071 1.534 -0.668 CA A1ATK 4
A1ATK CB C3 C 0 1 N N N N N N -1.728 10.762 -6.225 6.465 0.328 0.189 CB A1ATK 5
A1ATK CG C4 C 0 1 N N N N N N -2.267 9.367 -5.752 7.185 -0.703 -0.683 CG A1ATK 6
A1ATK CD C5 C 0 1 N N N N N N -2.242 9.063 -4.217 7.579 -1.908 0.174 CD A1ATK 7
A1ATK NE N2 N 0 1 N N N N N N -1.863 7.683 -3.833 8.269 -2.895 -0.660 NE A1ATK 8
A1ATK CZ C6 C 0 1 N N N N N N -2.719 6.800 -2.965 8.719 -4.070 -0.105 CZ A1ATK 9
A1ATK NH1 N3 N 0 1 N N N N N N -2.348 5.615 -2.635 9.333 -4.948 -0.847 NH1 A1ATK 10
A1ATK NH2 N4 N 0 1 N N N N N N -3.845 7.254 -2.555 8.522 -4.317 1.233 NH2 A1ATK 11
A1ATK C01 C7 C 0 1 N N N N N N -0.130 11.584 -8.258 5.255 2.493 0.160 C01 A1ATK 12
A1ATK C03 C8 C 0 1 N N N N N N -1.495 13.317 -9.808 3.138 3.184 1.175 C03 A1ATK 13
A1ATK C04 C9 C 0 1 N N N N N N -1.305 14.553 -10.743 1.932 3.635 0.341 C04 A1ATK 14
A1ATK C06 C10 C 0 1 N N N N N N -0.123 17.003 -10.720 -0.025 2.210 -0.023 C06 A1ATK 15
A1ATK C08 C11 C 0 1 N N N N N N -2.303 17.522 -12.285 -1.966 0.755 -0.349 C08 A1ATK 16
A1ATK C09 C12 C 0 1 N N S N N N -1.959 17.711 -13.791 -2.428 -0.276 0.685 C09 A1ATK 17
A1ATK C13 C13 C 0 1 Y N N N N N -3.530 17.016 -17.347 -6.149 0.072 0.227 C13 A1ATK 18
A1ATK C14 C14 C 0 1 Y N N N N N -4.898 17.056 -17.292 -6.648 -1.202 0.460 C14 A1ATK 19
A1ATK C15 C15 C 0 1 Y N N N N N -5.624 16.828 -18.430 -7.970 -1.489 0.174 C15 A1ATK 20
A1ATK C17 C16 C 0 1 Y N N N N N -4.975 16.568 -19.624 -8.797 -0.504 -0.343 C17 A1ATK 21
A1ATK C19 C17 C 0 1 Y N N N N N -3.608 16.536 -19.686 -8.301 0.766 -0.575 C19 A1ATK 22
A1ATK C20 C18 C 0 1 Y N N N N N -2.886 16.761 -18.551 -6.982 1.058 -0.286 C20 A1ATK 23
A1ATK C21 C19 C 0 1 N N N N N N -1.520 19.088 -14.105 -1.586 -1.546 0.545 C21 A1ATK 24
A1ATK C22 C20 C 0 1 N N N N N N -0.415 19.584 -13.262 -0.116 -1.218 0.815 C22 A1ATK 25
A1ATK C23 C21 C 0 1 N N N N N N -0.708 19.312 -11.769 0.373 -0.198 -0.218 C23 A1ATK 26
A1ATK C25 C22 C 0 1 N N N N N N 0.771 14.950 -9.529 2.094 1.519 -1.037 C25 A1ATK 27
A1ATK C26 C23 C 0 1 N N N N N N 0.898 13.443 -9.660 3.299 1.067 -0.203 C26 A1ATK 28
A1ATK F16 F1 F 0 1 N N N N N N -6.978 16.856 -18.380 -8.457 -2.729 0.400 F16 A1ATK 29
A1ATK N02 N5 N 0 1 N N N N N N -0.293 12.731 -9.205 3.945 2.257 0.370 N02 A1ATK 30
A1ATK N05 N6 N 0 1 N N N N N N -0.261 15.526 -10.376 1.286 2.446 -0.232 N05 A1ATK 31
A1ATK N07 N7 N 0 1 N N N N N N -1.039 17.873 -11.546 -0.521 0.968 -0.191 N07 A1ATK 32
A1ATK N12 N8 N 0 1 N N N N N N -2.698 17.257 -16.200 -4.811 0.365 0.515 N12 A1ATK 33
A1ATK O11 O2 O 0 1 N N N N N N -4.261 17.429 -14.444 -4.210 -1.747 0.201 O11 A1ATK 34
A1ATK O24 O3 O 0 1 N N N N N N 0.830 17.552 -10.270 -0.759 3.117 0.317 O24 A1ATK 35
A1ATK CL1 CL1 CL 0 0 N N N N N N -5.909 16.260 -21.103 -10.457 -0.865 -0.701 CL1 A1ATK 36
A1ATK H1 H1 H 0 1 N N N N N N -1.118 8.647 -7.278 7.051 2.971 -1.769 H1 A1ATK 37
A1ATK H2 H2 H 0 1 N N N N N N -0.238 9.116 -8.571 7.848 2.532 -0.377 H2 A1ATK 38
A1ATK H4 H4 H 0 1 N N N N N N -2.082 10.580 -8.356 5.481 1.196 -1.520 H4 A1ATK 39
A1ATK H5 H5 H 0 1 N N N N N N -0.902 11.082 -5.573 7.128 0.654 0.990 H5 A1ATK 40
A1ATK H6 H6 H 0 1 N N N N N N -2.537 11.506 -6.184 5.569 -0.121 0.618 H6 A1ATK 41
A1ATK H7 H7 H 0 1 N N N N N N -3.312 9.287 -6.086 6.522 -1.028 -1.484 H7 A1ATK 42
A1ATK H8 H8 H 0 1 N N N N N N -1.663 8.595 -6.250 8.081 -0.254 -1.112 H8 A1ATK 43
A1ATK H9 H9 H 0 1 N N N N N N -1.523 9.752 -3.749 8.242 -1.583 0.976 H9 A1ATK 44
A1ATK H10 H10 H 0 1 N N N N N N -3.249 9.258 -3.819 6.683 -2.357 0.603 H10 A1ATK 45
A1ATK H11 H11 H 0 1 N N N N N N -0.994 7.319 -4.168 8.408 -2.720 -1.604 H11 A1ATK 46
A1ATK H12 H12 H 0 1 N N N N N N -3.026 5.157 -2.060 9.651 -5.777 -0.455 H12 A1ATK 47
A1ATK H13 H13 H 0 1 N N N N N N -4.433 6.686 -1.979 8.066 -3.664 1.785 H13 A1ATK 48
A1ATK H14 H14 H 0 1 N N N N N N -4.135 8.176 -2.811 8.840 -5.146 1.625 H14 A1ATK 49
A1ATK H15 H15 H 0 1 N N N N N N -2.159 13.625 -8.987 3.739 4.051 1.448 H15 A1ATK 50
A1ATK H16 H16 H 0 1 N N N N N N -1.984 12.529 -10.399 2.793 2.679 2.077 H16 A1ATK 51
A1ATK H17 H17 H 0 1 N N N N N N -2.263 15.093 -10.775 1.224 4.165 0.978 H17 A1ATK 52
A1ATK H18 H18 H 0 1 N N N N N N -1.064 14.173 -11.747 2.268 4.291 -0.462 H18 A1ATK 53
A1ATK H19 H19 H 0 1 N N N N N N -3.122 18.194 -11.989 -2.172 0.383 -1.353 H19 A1ATK 54
A1ATK H20 H20 H 0 1 N N N N N N -2.592 16.480 -12.083 -2.494 1.695 -0.192 H20 A1ATK 55
A1ATK H21 H21 H 0 1 N N N N N N -1.147 17.013 -14.042 -2.306 0.134 1.687 H21 A1ATK 56
A1ATK H22 H22 H 0 1 N N N N N N -5.400 17.266 -16.359 -6.003 -1.970 0.863 H22 A1ATK 57
A1ATK H23 H23 H 0 1 N N N N N N -3.108 16.335 -20.622 -8.947 1.532 -0.979 H23 A1ATK 58
A1ATK H24 H24 H 0 1 N N N N N N -1.807 16.741 -18.589 -6.596 2.050 -0.467 H24 A1ATK 59
A1ATK H25 H25 H 0 1 N N N N N N -1.190 19.113 -15.154 -1.930 -2.291 1.264 H25 A1ATK 60
A1ATK H26 H26 H 0 1 N N N N N N -2.380 19.761 -13.975 -1.691 -1.942 -0.465 H26 A1ATK 61
A1ATK H27 H27 H 0 1 N N N N N N 0.516 19.072 -13.547 -0.014 -0.799 1.816 H27 A1ATK 62
A1ATK H28 H28 H 0 1 N N N N N N -0.300 20.667 -13.417 0.480 -2.128 0.738 H28 A1ATK 63
A1ATK H29 H29 H 0 1 N N N N N N 0.179 19.574 -11.174 1.388 0.114 0.028 H29 A1ATK 64
A1ATK H30 H30 H 0 1 N N N N N N -1.559 19.931 -11.450 0.357 -0.647 -1.211 H30 A1ATK 65
A1ATK H31 H31 H 0 1 N N N N N N 1.736 15.404 -9.799 2.441 2.024 -1.938 H31 A1ATK 66
A1ATK H32 H32 H 0 1 N N N N N N 0.534 15.189 -8.482 1.494 0.651 -1.312 H32 A1ATK 67
A1ATK H33 H33 H 0 1 N N N N N N 1.072 13.196 -10.718 2.963 0.412 0.600 H33 A1ATK 68
A1ATK H34 H34 H 0 1 N N N N N N 1.757 13.110 -9.059 4.007 0.537 -0.840 H34 A1ATK 69
A1ATK H35 H35 H 0 1 N N N N N N -1.713 17.301 -16.368 -4.554 1.268 0.761 H35 A1ATK 70
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
A1ATK CL1 C17 SING N N 1
A1ATK C19 C17 DOUB Y N 2
A1ATK C19 C20 SING Y N 3
A1ATK C17 C15 SING Y N 4
A1ATK C20 C13 DOUB Y N 5
A1ATK C15 F16 SING N N 6
A1ATK C15 C14 DOUB Y N 7
A1ATK C13 C14 SING Y N 8
A1ATK C13 N12 SING N N 9
A1ATK N12 C10 SING N N 10
A1ATK C10 O11 DOUB N N 11
A1ATK C10 C09 SING N N 12
A1ATK C21 C09 SING N N 13
A1ATK C21 C22 SING N N 14
A1ATK C09 C08 SING N N 15
A1ATK C22 C23 SING N N 16
A1ATK C08 N07 SING N N 17
A1ATK C23 N07 SING N N 18
A1ATK N07 C06 SING N N 19
A1ATK C04 N05 SING N N 20
A1ATK C04 C03 SING N N 21
A1ATK C06 N05 SING N N 22
A1ATK C06 O24 DOUB N N 23
A1ATK N05 C25 SING N N 24
A1ATK C03 N02 SING N N 25
A1ATK C26 C25 SING N N 26
A1ATK C26 N02 SING N N 27
A1ATK N02 C01 SING N N 28
A1ATK C01 O DOUB N N 29
A1ATK C01 CA SING N N 30
A1ATK CA N SING N N 31
A1ATK CA CB SING N N 32
A1ATK CB CG SING N N 33
A1ATK CG CD SING N N 34
A1ATK CD NE SING N N 35
A1ATK NE CZ SING N N 36
A1ATK CZ NH1 DOUB N N 37
A1ATK CZ NH2 SING N N 38
A1ATK N H1 SING N N 39
A1ATK N H2 SING N N 40
A1ATK CA H4 SING N N 41
A1ATK CB H5 SING N N 42
A1ATK CB H6 SING N N 43
A1ATK CG H7 SING N N 44
A1ATK CG H8 SING N N 45
A1ATK CD H9 SING N N 46
A1ATK CD H10 SING N N 47
A1ATK NE H11 SING N N 48
A1ATK NH1 H12 SING N N 49
A1ATK NH2 H13 SING N N 50
A1ATK NH2 H14 SING N N 51
A1ATK C03 H15 SING N N 52
A1ATK C03 H16 SING N N 53
A1ATK C04 H17 SING N N 54
A1ATK C04 H18 SING N N 55
A1ATK C08 H19 SING N N 56
A1ATK C08 H20 SING N N 57
A1ATK C09 H21 SING N N 58
A1ATK C14 H22 SING N N 59
A1ATK C19 H23 SING N N 60
A1ATK C20 H24 SING N N 61
A1ATK C21 H25 SING N N 62
A1ATK C21 H26 SING N N 63
A1ATK C22 H27 SING N N 64
A1ATK C22 H28 SING N N 65
A1ATK C23 H29 SING N N 66
A1ATK C23 H30 SING N N 67
A1ATK C25 H31 SING N N 68
A1ATK C25 H32 SING N N 69
A1ATK C26 H33 SING N N 70
A1ATK C26 H34 SING N N 71
A1ATK N12 H35 SING N N 72
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
A1ATK SMILES ACDLabs 12.01 "O=C(N1CCCC(C1)C(=O)Nc1ccc(Cl)c(F)c1)N1CCN(CC1)C(=O)C(N)CCCNC(=N)N"
A1ATK InChI InChI 1.06 "InChI=1S/C23H34ClFN8O3/c24-17-6-5-16(13-18(17)25)30-20(34)15-3-2-8-33(14-15)23(36)32-11-9-31(10-12-32)21(35)19(26)4-1-7-29-22(27)28/h5-6,13,15,19H,1-4,7-12,14,26H2,(H,30,34)(H4,27,28,29)/t15-,19-/m0/s1"
A1ATK InChIKey InChI 1.06 QLFBZRONRWNWQO-KXBFYZLASA-N
A1ATK SMILES_CANONICAL CACTVS 3.385 "N[C@@H](CCCNC(N)=N)C(=O)N1CCN(CC1)C(=O)N2CCC[C@@H](C2)C(=O)Nc3ccc(Cl)c(F)c3"
A1ATK SMILES CACTVS 3.385 "N[CH](CCCNC(N)=N)C(=O)N1CCN(CC1)C(=O)N2CCC[CH](C2)C(=O)Nc3ccc(Cl)c(F)c3"
A1ATK SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[H]/N=C(/N)\NCCC[C@@H](C(=O)N1CCN(CC1)C(=O)N2CCC[C@@H](C2)C(=O)Nc3ccc(c(c3)F)Cl)N"
A1ATK SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(c(cc1NC(=O)C2CCCN(C2)C(=O)N3CCN(CC3)C(=O)C(CCCNC(=N)N)N)F)Cl"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
A1ATK "SYSTEMATIC NAME" ACDLabs 12.01 "(3S)-1-(4-L-arginylpiperazine-1-carbonyl)-N-(4-chloro-3-fluorophenyl)piperidine-3-carboxamide"
A1ATK "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(3~{S})-1-[4-[(2~{S})-2-azanyl-5-carbamimidamido-pentanoyl]piperazin-1-yl]carbonyl-~{N}-(4-chloranyl-3-fluoranyl-phenyl)piperidine-3-carboxamide"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
A1ATK "Create component" 2024-05-29 RCSB
A1ATK "Initial release" 2025-04-02 RCSB
#