data_A1AV3 # _chem_comp.id A1AV3 _chem_comp.name "N-[(2S)-1-{[(2S)-1-hydroxy-3-(2-oxo-1,2-dihydropyridin-3-yl)propan-2-yl]amino}-4-methyl-1-oxopentan-2-yl]-1H-indole-2-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C23 H28 N4 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-06-27 _chem_comp.pdbx_modified_date 2025-01-10 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 424.493 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1AV3 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9CEC _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1AV3 C10 C1 C 0 1 Y N N N N N 114.693 -10.737 69.022 4.584 0.161 -1.285 C10 A1AV3 1 A1AV3 C13 C2 C 0 1 Y N N N N N 115.011 -7.100 70.235 7.885 1.255 0.170 C13 A1AV3 2 A1AV3 C15 C3 C 0 1 Y N N N N N 113.884 -7.357 68.109 6.172 0.961 1.830 C15 A1AV3 3 A1AV3 C21 C4 C 0 1 N N S N N N 111.460 -15.990 64.826 -3.395 -0.244 1.377 C21 A1AV3 4 A1AV3 C22 C5 C 0 1 N N N N N N 110.982 -15.179 63.680 -4.632 0.247 0.623 C22 A1AV3 5 A1AV3 C24 C6 C 0 1 N N N N N N 109.777 -13.684 65.434 -3.935 1.254 -1.547 C24 A1AV3 6 A1AV3 C26 C7 C 0 1 N N N N N N 108.546 -11.789 64.607 -3.596 3.605 -1.769 C26 A1AV3 7 A1AV3 C28 C8 C 0 1 N N N N N N 109.658 -13.159 63.118 -4.248 2.725 0.311 C28 A1AV3 8 A1AV3 C01 C9 C 0 1 N N N N N N 117.258 -15.081 67.154 -1.612 -2.809 -2.268 C01 A1AV3 9 A1AV3 C02 C10 C 0 1 N N N N N N 116.384 -16.142 67.792 -1.352 -3.251 -0.827 C02 A1AV3 10 A1AV3 C03 C11 C 0 1 N N N N N N 117.172 -16.628 69.032 -1.328 -4.779 -0.758 C03 A1AV3 11 A1AV3 C04 C12 C 0 1 N N N N N N 114.943 -15.710 68.057 -0.003 -2.699 -0.360 C04 A1AV3 12 A1AV3 C05 C13 C 0 1 N N S N N N 114.380 -14.671 67.073 -0.076 -1.172 -0.285 C05 A1AV3 13 A1AV3 C07 C14 C 0 1 N N N N N N 113.871 -12.258 67.066 2.191 -0.470 -0.838 C07 A1AV3 14 A1AV3 C09 C15 C 0 1 Y N N N N N 114.038 -10.922 67.795 3.541 -0.043 -0.439 C09 A1AV3 15 A1AV3 C11 C16 C 0 1 Y N N N N N 114.697 -9.328 69.267 5.697 0.562 -0.508 C11 A1AV3 16 A1AV3 C12 C17 C 0 1 Y N N N N N 115.184 -8.491 70.312 7.020 0.899 -0.823 C12 A1AV3 17 A1AV3 C14 C18 C 0 1 Y N N N N N 114.357 -6.535 69.127 7.467 1.287 1.494 C14 A1AV3 18 A1AV3 C16 C19 C 0 1 Y N N N N N 114.058 -8.766 68.188 5.271 0.595 0.834 C16 A1AV3 19 A1AV3 C18 C20 C 0 1 N N N N N N 112.998 -15.119 66.699 -1.101 -0.768 0.743 C18 A1AV3 20 A1AV3 C23 C21 C 0 1 N N N N N N 110.114 -13.992 64.125 -4.261 1.430 -0.234 C23 A1AV3 21 A1AV3 C25 C22 C 0 1 N N N N N N 108.970 -12.568 65.673 -3.594 2.370 -2.323 C25 A1AV3 22 A1AV3 C30 C23 C 0 1 N N N N N N 111.797 -17.486 64.419 -3.795 -1.364 2.340 C30 A1AV3 23 A1AV3 N06 N1 N 0 1 N N N N N N 114.432 -13.418 67.705 1.235 -0.639 0.096 N06 A1AV3 24 A1AV3 N17 N2 N 0 1 Y N N N N N 113.679 -9.743 67.314 3.949 0.215 0.855 N17 A1AV3 25 A1AV3 N20 N3 N 0 1 N N N N N N 112.767 -15.453 65.297 -2.409 -0.753 0.420 N20 A1AV3 26 A1AV3 N27 N4 N 0 1 N N N N N N 108.901 -12.104 63.359 -3.926 3.779 -0.464 N27 A1AV3 27 A1AV3 O08 O1 O 0 1 N N N N N N 113.412 -12.342 65.960 1.938 -0.671 -2.011 O08 A1AV3 28 A1AV3 O19 O2 O 0 1 N N N N N N 112.160 -15.212 67.513 -0.749 -0.456 1.860 O19 A1AV3 29 A1AV3 O29 O3 O 0 1 N N N N N N 109.965 -13.421 62.017 -4.542 2.897 1.483 O29 A1AV3 30 A1AV3 O31 O4 O 0 1 N N N N N N 110.644 -18.298 64.410 -4.469 -2.396 1.617 O31 A1AV3 31 A1AV3 H101 H1 H 0 0 N N N N N N 115.111 -11.506 69.655 4.569 0.034 -2.358 H101 A1AV3 32 A1AV3 H131 H2 H 0 0 N N N N N N 115.380 -6.465 71.027 8.904 1.515 -0.076 H131 A1AV3 33 A1AV3 H151 H3 H 0 0 N N N N N N 113.383 -6.923 67.256 5.857 0.989 2.862 H151 A1AV3 34 A1AV3 H211 H4 H 0 0 N N N N N N 110.722 -15.990 65.641 -2.961 0.582 1.941 H211 A1AV3 35 A1AV3 H222 H5 H 0 0 N N N N N N 110.387 -15.823 63.016 -5.014 -0.554 -0.009 H222 A1AV3 36 A1AV3 H221 H6 H 0 0 N N N N N N 111.854 -14.793 63.132 -5.399 0.543 1.338 H221 A1AV3 37 A1AV3 H241 H7 H 0 0 N N N N N N 110.131 -14.294 66.252 -3.935 0.266 -1.982 H241 A1AV3 38 A1AV3 H261 H8 H 0 0 N N N N N N 107.926 -10.923 64.787 -3.332 4.462 -2.372 H261 A1AV3 39 A1AV3 H013 H9 H 0 0 N N N N N N 118.271 -15.482 67.003 -0.771 -3.103 -2.896 H013 A1AV3 40 A1AV3 H012 H10 H 0 0 N N N N N N 116.831 -14.789 66.183 -2.523 -3.284 -2.634 H012 A1AV3 41 A1AV3 H011 H11 H 0 0 N N N N N N 117.307 -14.201 67.813 -1.729 -1.726 -2.300 H011 A1AV3 42 A1AV3 H021 H12 H 0 0 N N N N N N 116.341 -16.989 67.092 -2.143 -2.871 -0.181 H021 A1AV3 43 A1AV3 H033 H13 H 0 0 N N N N N N 116.595 -17.407 69.552 -0.536 -5.160 -1.404 H033 A1AV3 44 A1AV3 H032 H14 H 0 0 N N N N N N 118.140 -17.041 68.712 -1.142 -5.094 0.269 H032 A1AV3 45 A1AV3 H031 H15 H 0 0 N N N N N N 117.342 -15.781 69.713 -2.288 -5.173 -1.091 H031 A1AV3 46 A1AV3 H042 H16 H 0 0 N N N N N N 114.897 -15.281 69.069 0.233 -3.100 0.625 H042 A1AV3 47 A1AV3 H041 H17 H 0 0 N N N N N N 114.305 -16.605 68.009 0.774 -2.991 -1.067 H041 A1AV3 48 A1AV3 H051 H18 H 0 0 N N N N N N 115.010 -14.669 66.171 -0.361 -0.774 -1.259 H051 A1AV3 49 A1AV3 H121 H19 H 0 0 N N N N N N 115.686 -8.927 71.163 7.354 0.877 -1.850 H121 A1AV3 50 A1AV3 H141 H20 H 0 0 N N N N N N 114.222 -5.465 69.066 8.165 1.571 2.269 H141 A1AV3 51 A1AV3 H251 H21 H 0 0 N N N N N N 108.679 -12.314 66.681 -3.330 2.245 -3.363 H251 A1AV3 52 A1AV3 H1 H22 H 0 1 N N N N N N 112.517 -17.898 65.141 -2.902 -1.774 2.812 H1 A1AV3 53 A1AV3 H301 H23 H 0 0 N N N N N N 112.243 -17.490 63.414 -4.460 -0.964 3.106 H301 A1AV3 54 A1AV3 H061 H24 H 0 0 N N N N N N 114.861 -13.332 68.604 1.413 -0.408 1.021 H061 A1AV3 55 A1AV3 H171 H25 H 0 0 N N N N N N 113.205 -9.592 66.447 3.394 0.145 1.647 H171 A1AV3 56 A1AV3 H201 H26 H 0 0 N N N N N N 113.505 -15.318 64.636 -2.699 -1.080 -0.447 H201 A1AV3 57 A1AV3 H271 H27 H 0 0 N N N N N N 108.590 -11.535 62.598 -3.919 4.670 -0.082 H271 A1AV3 58 A1AV3 H311 H28 H 0 0 N N N N N N 110.882 -19.184 64.163 -4.753 -3.140 2.166 H311 A1AV3 59 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1AV3 O29 C28 DOUB N N 1 A1AV3 C28 N27 SING N N 2 A1AV3 C28 C23 SING N N 3 A1AV3 N27 C26 SING N N 4 A1AV3 C22 C23 SING N N 5 A1AV3 C22 C21 SING N N 6 A1AV3 C23 C24 DOUB N N 7 A1AV3 O31 C30 SING N N 8 A1AV3 C30 C21 SING N N 9 A1AV3 C26 C25 DOUB N N 10 A1AV3 C21 N20 SING N N 11 A1AV3 N20 C18 SING N N 12 A1AV3 C24 C25 SING N N 13 A1AV3 O08 C07 DOUB N N 14 A1AV3 C18 C05 SING N N 15 A1AV3 C18 O19 DOUB N N 16 A1AV3 C07 N06 SING N N 17 A1AV3 C07 C09 SING N N 18 A1AV3 C05 N06 SING N N 19 A1AV3 C05 C04 SING N N 20 A1AV3 C01 C02 SING N N 21 A1AV3 N17 C09 SING Y N 22 A1AV3 N17 C16 SING Y N 23 A1AV3 C02 C04 SING N N 24 A1AV3 C02 C03 SING N N 25 A1AV3 C09 C10 DOUB Y N 26 A1AV3 C15 C16 DOUB Y N 27 A1AV3 C15 C14 SING Y N 28 A1AV3 C16 C11 SING Y N 29 A1AV3 C10 C11 SING Y N 30 A1AV3 C14 C13 DOUB Y N 31 A1AV3 C11 C12 DOUB Y N 32 A1AV3 C13 C12 SING Y N 33 A1AV3 C10 H101 SING N N 34 A1AV3 C13 H131 SING N N 35 A1AV3 C15 H151 SING N N 36 A1AV3 C21 H211 SING N N 37 A1AV3 C22 H222 SING N N 38 A1AV3 C22 H221 SING N N 39 A1AV3 C24 H241 SING N N 40 A1AV3 C26 H261 SING N N 41 A1AV3 C01 H013 SING N N 42 A1AV3 C01 H012 SING N N 43 A1AV3 C01 H011 SING N N 44 A1AV3 C02 H021 SING N N 45 A1AV3 C03 H033 SING N N 46 A1AV3 C03 H032 SING N N 47 A1AV3 C03 H031 SING N N 48 A1AV3 C04 H042 SING N N 49 A1AV3 C04 H041 SING N N 50 A1AV3 C05 H051 SING N N 51 A1AV3 C12 H121 SING N N 52 A1AV3 C14 H141 SING N N 53 A1AV3 C25 H251 SING N N 54 A1AV3 C30 H1 SING N N 55 A1AV3 C30 H301 SING N N 56 A1AV3 N06 H061 SING N N 57 A1AV3 N17 H171 SING N N 58 A1AV3 N20 H201 SING N N 59 A1AV3 N27 H271 SING N N 60 A1AV3 O31 H311 SING N N 61 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1AV3 SMILES ACDLabs 12.01 "O=C1NC=CC=C1CC(CO)NC(=O)C(CC(C)C)NC(=O)c1cc2ccccc2[NH]1" A1AV3 InChI InChI 1.06 "InChI=1S/C23H28N4O4/c1-14(2)10-19(27-23(31)20-12-15-6-3-4-8-18(15)26-20)22(30)25-17(13-28)11-16-7-5-9-24-21(16)29/h3-9,12,14,17,19,26,28H,10-11,13H2,1-2H3,(H,24,29)(H,25,30)(H,27,31)/t17-,19-/m0/s1" A1AV3 InChIKey InChI 1.06 QGBHNSLEOAYSRW-HKUYNNGSSA-N A1AV3 SMILES_CANONICAL CACTVS 3.385 "CC(C)C[C@H](NC(=O)c1[nH]c2ccccc2c1)C(=O)N[C@H](CO)CC3=CC=CNC3=O" A1AV3 SMILES CACTVS 3.385 "CC(C)C[CH](NC(=O)c1[nH]c2ccccc2c1)C(=O)N[CH](CO)CC3=CC=CNC3=O" A1AV3 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)C[C@@H](C(=O)N[C@@H](CC1=CC=CNC1=O)CO)NC(=O)c2cc3ccccc3[nH]2" A1AV3 SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)CC(C(=O)NC(CC1=CC=CNC1=O)CO)NC(=O)c2cc3ccccc3[nH]2" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1AV3 "SYSTEMATIC NAME" ACDLabs 12.01 "N-[(2S)-1-{[(2S)-1-hydroxy-3-(2-oxo-1,2-dihydropyridin-3-yl)propan-2-yl]amino}-4-methyl-1-oxopentan-2-yl]-1H-indole-2-carboxamide" A1AV3 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}-[(2~{S})-4-methyl-1-oxidanylidene-1-[[(2~{S})-1-oxidanyl-3-(2-oxidanylidene-1~{H}-pyridin-3-yl)propan-2-yl]amino]pentan-2-yl]-1~{H}-indole-2-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1AV3 "Create component" 2024-06-27 RCSB A1AV3 "Modify PCM" 2024-09-27 PDBE A1AV3 "Initial release" 2025-01-15 RCSB # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1AV3 _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C30 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #