data_A1AVA # _chem_comp.id A1AVA _chem_comp.name 2-acetamido-2,3-dideoxy-D-ribo-hexitol _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C8 H17 N O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-06-14 _chem_comp.pdbx_modified_date 2025-08-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 207.224 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1AVA _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9C9A _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1AVA C01 C1 C 0 1 N N N N N N 20.645 -4.759 -21.346 3.329 -2.273 -0.628 C01 A1AVA 1 A1AVA C02 C2 C 0 1 N N N N N N 21.851 -5.689 -21.476 2.754 -1.141 0.184 C02 A1AVA 2 A1AVA C05 C3 C 0 1 N N R N N N 23.404 -6.964 -23.091 1.225 0.737 0.453 C05 A1AVA 3 A1AVA C06 C4 C 0 1 N N N N N N 24.463 -6.215 -23.909 -0.191 1.048 -0.037 C06 A1AVA 4 A1AVA C07 C5 C 0 1 N N S N N N 25.413 -5.307 -23.133 -1.101 -0.152 0.238 C07 A1AVA 5 A1AVA C09 C6 C 0 1 N N R N N N 25.983 -4.265 -24.099 -2.541 0.204 -0.136 C09 A1AVA 6 A1AVA C11 C7 C 0 1 N N N N N N 25.690 -2.850 -23.596 -3.450 -0.995 0.139 C11 A1AVA 7 A1AVA C13 C8 C 0 1 N N N N N N 22.919 -8.017 -24.073 2.104 1.978 0.292 C13 A1AVA 8 A1AVA N04 N1 N 0 1 N N N N N N 22.275 -6.086 -22.813 1.784 -0.363 -0.337 N04 A1AVA 9 A1AVA O03 O1 O 0 1 N N N N N N 22.422 -6.064 -20.499 3.164 -0.931 1.306 O03 A1AVA 10 A1AVA O08 O2 O 0 1 N N N N N N 24.725 -4.660 -22.101 -0.667 -1.267 -0.542 O08 A1AVA 11 A1AVA O10 O3 O 0 1 N N N N N N 27.370 -4.443 -24.231 -2.974 1.320 0.644 O10 A1AVA 12 A1AVA O12 O4 O 0 1 N N N N N N 24.429 -2.443 -24.054 -4.773 -0.705 -0.318 O12 A1AVA 13 A1AVA O14 O5 O 0 1 N N N N N N 22.650 -7.314 -25.263 2.056 2.424 -1.065 O14 A1AVA 14 A1AVA H1 H1 H 0 1 N N N N N N 20.457 -4.548 -20.283 2.755 -3.181 -0.445 H1 A1AVA 15 A1AVA H2 H2 H 0 1 N N N N N N 20.850 -3.817 -21.876 3.281 -2.021 -1.688 H2 A1AVA 16 A1AVA H3 H3 H 0 1 N N N N N N 19.760 -5.242 -21.786 4.368 -2.436 -0.340 H3 A1AVA 17 A1AVA H4 H4 H 0 1 N N N N N N 23.832 -7.414 -22.183 1.191 0.449 1.503 H4 A1AVA 18 A1AVA H5 H5 H 0 1 N N N N N N 23.935 -5.593 -24.647 -0.573 1.922 0.489 H5 A1AVA 19 A1AVA H6 H6 H 0 1 N N N N N N 25.073 -6.966 -24.432 -0.169 1.248 -1.108 H6 A1AVA 20 A1AVA H7 H7 H 0 1 N N N N N N 26.240 -5.912 -22.732 -1.053 -0.408 1.297 H7 A1AVA 21 A1AVA H8 H8 H 0 1 N N N N N N 25.492 -4.394 -25.075 -2.588 0.461 -1.195 H8 A1AVA 22 A1AVA H9 H9 H 0 1 N N N N N N 25.701 -2.842 -22.496 -3.068 -1.870 -0.387 H9 A1AVA 23 A1AVA H10 H10 H 0 1 N N N N N N 26.458 -2.160 -23.975 -3.472 -1.196 1.210 H10 A1AVA 24 A1AVA H11 H11 H 0 1 N N N N N N 22.007 -8.504 -23.698 1.740 2.769 0.947 H11 A1AVA 25 A1AVA H12 H12 H 0 1 N N N N N N 23.697 -8.776 -24.241 3.132 1.732 0.557 H12 A1AVA 26 A1AVA H13 H13 H 0 1 N N N N N N 21.756 -5.732 -23.591 1.456 -0.532 -1.234 H13 A1AVA 27 A1AVA H14 H14 H 0 1 N N N N N N 24.371 -5.307 -21.502 -0.683 -1.110 -1.496 H14 A1AVA 28 A1AVA H15 H15 H 0 1 N N N N N N 27.549 -5.322 -24.543 -2.958 1.163 1.598 H15 A1AVA 29 A1AVA H16 H16 H 0 1 N N N N N N 24.247 -1.564 -23.742 -5.405 -1.423 -0.175 H16 A1AVA 30 A1AVA H17 H17 H 0 1 N N N N N N 22.340 -7.920 -25.926 2.591 3.210 -1.241 H17 A1AVA 31 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1AVA O14 C13 SING N N 1 A1AVA O10 C09 SING N N 2 A1AVA C09 C11 SING N N 3 A1AVA C09 C07 SING N N 4 A1AVA C13 C05 SING N N 5 A1AVA O12 C11 SING N N 6 A1AVA C06 C07 SING N N 7 A1AVA C06 C05 SING N N 8 A1AVA C07 O08 SING N N 9 A1AVA C05 N04 SING N N 10 A1AVA N04 C02 SING N N 11 A1AVA C02 C01 SING N N 12 A1AVA C02 O03 DOUB N N 13 A1AVA C01 H1 SING N N 14 A1AVA C01 H2 SING N N 15 A1AVA C01 H3 SING N N 16 A1AVA C05 H4 SING N N 17 A1AVA C06 H5 SING N N 18 A1AVA C06 H6 SING N N 19 A1AVA C07 H7 SING N N 20 A1AVA C09 H8 SING N N 21 A1AVA C11 H9 SING N N 22 A1AVA C11 H10 SING N N 23 A1AVA C13 H11 SING N N 24 A1AVA C13 H12 SING N N 25 A1AVA N04 H13 SING N N 26 A1AVA O08 H14 SING N N 27 A1AVA O10 H15 SING N N 28 A1AVA O12 H16 SING N N 29 A1AVA O14 H17 SING N N 30 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1AVA SMILES ACDLabs 12.01 "OC(CC(NC(C)=O)CO)C(O)CO" A1AVA InChI InChI 1.06 "InChI=1S/C8H17NO5/c1-5(12)9-6(3-10)2-7(13)8(14)4-11/h6-8,10-11,13-14H,2-4H2,1H3,(H,9,12)/t6-,7+,8-/m1/s1" A1AVA InChIKey InChI 1.06 LGGVICIJYZNZDM-GJMOJQLCSA-N A1AVA SMILES_CANONICAL CACTVS 3.385 "CC(=O)N[C@@H](CO)C[C@H](O)[C@H](O)CO" A1AVA SMILES CACTVS 3.385 "CC(=O)N[CH](CO)C[CH](O)[CH](O)CO" A1AVA SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(=O)N[C@H](C[C@@H]([C@@H](CO)O)O)CO" A1AVA SMILES "OpenEye OEToolkits" 2.0.7 "CC(=O)NC(CC(C(CO)O)O)CO" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1AVA "SYSTEMATIC NAME" ACDLabs 12.01 2-acetamido-2,3-dideoxy-D-ribo-hexitol A1AVA "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}-[(2~{R},4~{S},5~{R})-1,4,5,6-tetrakis(oxidanyl)hexan-2-yl]ethanamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1AVA "Create component" 2024-06-14 RCSB A1AVA "Modify PCM" 2024-09-27 PDBE A1AVA "Initial release" 2025-08-06 RCSB # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1AVA _pdbx_chem_comp_pcm.modified_residue_id LYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C13 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom NZ _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #