data_A1AVD # _chem_comp.id A1AVD _chem_comp.name "Rh(pentamethylcyclopentadiene)(8-aminoquinoline)Cl" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H24 N2 Rh" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 1 _chem_comp.pdbx_initial_date 2024-06-14 _chem_comp.pdbx_modified_date 2025-06-13 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 395.323 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1AVD _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9C9H _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1AVD C1 C1 C 0 1 Y N N N N N 2.248 -2.606 10.115 2.248 -2.606 10.115 C1 A1AVD 1 A1AVD C2 C2 C 0 1 Y N N N N N 1.907 -3.805 10.677 1.907 -3.805 10.677 C2 A1AVD 2 A1AVD H2 H2 H 0 1 N N N N N N 1.248 -4.480 10.151 1.248 -4.480 10.151 H2 A1AVD 3 A1AVD C3 C3 C 0 1 Y N N N N N 2.417 -4.161 11.947 2.417 -4.161 11.947 C3 A1AVD 4 A1AVD H3 H3 H 0 1 N N N N N N 2.149 -5.113 12.382 2.149 -5.113 12.382 H3 A1AVD 5 A1AVD C4 C4 C 0 1 Y N N N N N 3.244 -3.317 12.630 3.244 -3.317 12.630 C4 A1AVD 6 A1AVD C5 C5 C 0 1 Y N N N N N 3.611 -2.067 12.074 3.611 -2.067 12.074 C5 A1AVD 7 A1AVD C6 C6 C 0 1 Y N N N N N 4.487 -1.156 12.704 4.487 -1.156 12.704 C6 A1AVD 8 A1AVD H6 H6 H 0 1 N N N N N N 4.911 -1.386 13.671 4.911 -1.386 13.671 H6 A1AVD 9 A1AVD C7 C7 C 0 1 Y N N N N N 4.792 0.016 12.079 4.792 0.016 12.079 C7 A1AVD 10 A1AVD H7 H7 H 0 1 N N N N N N 5.465 0.719 12.547 5.465 0.719 12.547 H7 A1AVD 11 A1AVD C8 C8 C 0 1 Y N N N N N 4.228 0.310 10.821 4.228 0.310 10.821 C8 A1AVD 12 A1AVD H8 H8 H 0 1 N N N N N N 4.482 1.245 10.343 4.482 1.245 10.343 H8 A1AVD 13 A1AVD C9 C9 C 0 1 Y N N N N N 3.092 -1.710 10.807 3.092 -1.710 10.807 C9 A1AVD 14 A1AVD C10 C10 C 0 1 N N N N N N 2.127 1.814 8.252 2.127 1.814 8.252 C10 A1AVD 15 A1AVD C11 C11 C 0 1 N N N N N N 2.359 2.800 9.351 2.359 2.800 9.351 C11 A1AVD 16 A1AVD H11A H11A H 0 0 N N N N N N 1.495 2.800 10.032 1.495 2.800 10.032 H11A A1AVD 17 A1AVD H11B H11B H 0 0 N N N N N N 3.265 2.521 9.908 3.266 2.521 9.908 H11B A1AVD 18 A1AVD H11C H11C H 0 0 N N N N N N 2.487 3.804 8.921 2.487 3.804 8.921 H11C A1AVD 19 A1AVD C12 C12 C 0 1 N N N N N N 3.004 1.516 7.173 3.004 1.516 7.173 C12 A1AVD 20 A1AVD C13 C13 C 0 1 N N N N N N 4.349 2.119 6.898 4.349 2.119 6.898 C13 A1AVD 21 A1AVD H13A H13A H 0 0 N N N N N N 4.771 1.674 5.985 4.771 1.673 5.985 H13A A1AVD 22 A1AVD H13B H13B H 0 0 N N N N N N 4.243 3.205 6.760 4.242 3.205 6.760 H13B A1AVD 23 A1AVD H13C H13C H 0 0 N N N N N N 5.020 1.921 7.747 5.020 1.921 7.747 H13C A1AVD 24 A1AVD C14 C14 C 0 1 N N N N N N 2.329 0.558 6.313 2.329 0.558 6.313 C14 A1AVD 25 A1AVD C15 C15 C 0 1 N N N N N N 2.864 -0.009 5.036 2.864 -0.009 5.036 C15 A1AVD 26 A1AVD H15A H15A H 0 0 N N N N N N 2.130 -0.707 4.608 2.130 -0.707 4.608 H15A A1AVD 27 A1AVD H15B H15B H 0 0 N N N N N N 3.052 0.807 4.323 3.052 0.807 4.323 H15B A1AVD 28 A1AVD H15C H15C H 0 0 N N N N N N 3.804 -0.544 5.238 3.804 -0.544 5.238 H15C A1AVD 29 A1AVD C16 C16 C 0 1 N N N N N N 1.069 0.258 6.883 1.069 0.258 6.883 C16 A1AVD 30 A1AVD C17 C17 C 0 1 N N N N N N 0.040 -0.653 6.296 0.040 -0.653 6.296 C17 A1AVD 31 A1AVD H17A H17A H 0 0 N N N N N N -0.837 -0.693 6.959 -0.836 -0.693 6.959 H17A A1AVD 32 A1AVD H17B H17B H 0 0 N N N N N N -0.264 -0.275 5.309 -0.264 -0.275 5.309 H17B A1AVD 33 A1AVD H17C H17C H 0 0 N N N N N N 0.463 -1.662 6.187 0.463 -1.662 6.187 H17C A1AVD 34 A1AVD C18 C18 C 0 1 N N N N N N 0.940 1.002 8.119 0.940 1.002 8.119 C18 A1AVD 35 A1AVD C19 C19 C 0 1 N N N N N N -0.262 1.037 9.006 -0.262 1.037 9.006 C19 A1AVD 36 A1AVD H19A H19A H 0 0 N N N N N N -1.001 0.304 8.652 -1.001 0.303 8.652 H19A A1AVD 37 A1AVD H19B H19B H 0 0 N N N N N N 0.035 0.790 10.036 0.035 0.790 10.036 H19B A1AVD 38 A1AVD H19C H19C H 0 0 N N N N N N -0.705 2.044 8.984 -0.705 2.044 8.984 H19C A1AVD 39 A1AVD CL CL C 0 1 N N N N N N 4.612 -1.537 7.612 4.612 -1.537 7.612 CL A1AVD 40 A1AVD N2 N2 N 1 1 Y N N N N N 3.401 -0.515 10.205 3.401 -0.515 10.205 N2 A1AVD 41 A1AVD N1 N1 N 0 1 N N N N N N 1.781 -2.174 8.816 1.781 -2.174 8.816 N1 A1AVD 42 A1AVD RH RH RH 0 0 N N N N N N 2.627 -0.303 8.263 2.627 -0.303 8.263 RH A1AVD 43 A1AVD H1 H1 H 0 1 N N N N N N 3.621 -3.604 13.601 3.621 -3.604 13.601 H1 A1AVD 44 A1AVD H5 H5 H 0 1 N N N N N N 4.448 -2.612 7.780 4.448 -2.612 7.780 H5 A1AVD 45 A1AVD H9 H9 H 0 1 N N N N N N 4.821 -1.360 6.547 4.821 -1.360 6.547 H9 A1AVD 46 A1AVD H10 H10 H 0 1 N N N N N N 5.468 -1.199 8.214 5.468 -1.199 8.214 H10 A1AVD 47 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1AVD C1 C2 DOUB Y N 1 A1AVD C1 C9 SING Y N 2 A1AVD C1 N1 SING N N 3 A1AVD C2 H2 SING N N 4 A1AVD C2 C3 SING Y N 5 A1AVD C3 H3 SING N N 6 A1AVD C3 C4 DOUB Y N 7 A1AVD C4 C5 SING Y N 8 A1AVD C5 C6 SING Y N 9 A1AVD C5 C9 DOUB Y N 10 A1AVD C6 H6 SING N N 11 A1AVD C6 C7 DOUB Y N 12 A1AVD C7 H7 SING N N 13 A1AVD C7 C8 SING Y N 14 A1AVD C8 H8 SING N N 15 A1AVD C8 N2 DOUB Y N 16 A1AVD C9 N2 SING Y N 17 A1AVD C10 C11 SING N N 18 A1AVD C10 C12 DOUB N N 19 A1AVD C10 C18 SING N N 20 A1AVD C10 RH SING N N 21 A1AVD C11 H11A SING N N 22 A1AVD C11 H11B SING N N 23 A1AVD C11 H11C SING N N 24 A1AVD C12 C13 SING N N 25 A1AVD C12 C14 SING N N 26 A1AVD C12 RH SING N N 27 A1AVD C13 H13A SING N N 28 A1AVD C13 H13B SING N N 29 A1AVD C13 H13C SING N N 30 A1AVD C14 C15 SING N N 31 A1AVD C14 C16 DOUB N N 32 A1AVD C14 RH SING N N 33 A1AVD C15 H15A SING N N 34 A1AVD C15 H15B SING N N 35 A1AVD C15 H15C SING N N 36 A1AVD C16 C17 SING N N 37 A1AVD C16 C18 SING N N 38 A1AVD C16 RH SING N N 39 A1AVD C17 H17A SING N N 40 A1AVD C17 H17B SING N N 41 A1AVD C17 H17C SING N N 42 A1AVD C18 C19 SING N N 43 A1AVD C18 RH SING N N 44 A1AVD C19 H19A SING N N 45 A1AVD C19 H19B SING N N 46 A1AVD C19 H19C SING N N 47 A1AVD CL RH SING N N 48 A1AVD N2 RH SING N N 49 A1AVD N1 RH SING N N 50 A1AVD C4 H1 SING N N 51 A1AVD CL H5 SING N N 52 A1AVD CL H9 SING N N 53 A1AVD CL H10 SING N N 54 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1AVD SMILES ACDLabs 12.01 "CC12=C3(C)C4(C)=C5(C)C1(C)[Rh]12345(C)Nc2cccc3ccc[n+]1c32" A1AVD InChI InChI 1.06 "InChI=1S/C10H15.C9H7N2.CH3.Rh/c1-6-7(2)9(4)10(5)8(6)3;10-8-5-1-3-7-4-2-6-11-9(7)8;;/h1-5H3;1-6,10H;1H3;/q;-1;;+2" A1AVD InChIKey InChI 1.06 OGJMMRAAIAEDPR-UHFFFAOYSA-N A1AVD SMILES_CANONICAL CACTVS 3.385 "C[Rh]([n+]1cccc2cccc(N)c12)C3(C)C(=C(C)C(=C3C)C)C" A1AVD SMILES CACTVS 3.385 "C[Rh]([n+]1cccc2cccc(N)c12)C3(C)C(=C(C)C(=C3C)C)C" A1AVD SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC12=C3([Rh]1456(C2(=C4(C53C)C)C)([N]c7cccc8c7[n+]6ccc8)C)C" A1AVD SMILES "OpenEye OEToolkits" 2.0.7 "CC12=C3([Rh]1456(C2(=C4(C53C)C)C)([N]c7cccc8c7[n+]6ccc8)C)C" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1AVD "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "1,2,3,4,5,6-hexamethylspiro[1$l^{8}-rhodapentacyclo[2.2.0.0^{1,3}.0^{1,5}.0^{2,6}]hexane-1,2'-3$l^{2}-aza-1-azonia-2$l^{8}-rhodatricyclo[6.3.1.0^{4,12}]dodeca-1(11),4,6,8(12),9-pentaene]" A1AVD "SYSTEMATIC NAME" ACDLabs 12.01 "methyl[(1,2,3,4,5-eta)-pentamethylcyclopentadienyl](quinolin-8-aminido-kappa~2~N,N')rhodium(1+)" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1AVD "Create component" 2024-06-14 RCSB A1AVD "Other modification" 2024-06-27 RCSB A1AVD "Modify name" 2024-06-28 RCSB A1AVD "Initial release" 2025-06-18 RCSB #