data_A1AVF # _chem_comp.id A1AVF _chem_comp.name "(1R,5R)-2-({5-fluoro-2-[(5-{7-[(1-methylcyclopropyl)methyl]-2,7-diazaspiro[3.5]nonan-2-yl}-1,2,4-triazin-6-yl)oxy]phenyl}methyl)-2-azabicyclo[3.1.0]hexan-3-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C27 H33 F N6 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-06-14 _chem_comp.pdbx_modified_date 2025-01-10 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 492.588 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1AVF _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9C93 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1AVF N6 N1 N 0 1 Y N N N N N -16.506 -16.206 -25.036 -1.849 3.503 -1.732 N6 A1AVF 1 A1AVF C18 C1 C 0 1 Y N N N N N -14.098 -15.658 -21.725 -3.333 0.823 0.773 C18 A1AVF 2 A1AVF N5 N2 N 0 1 Y N N N N N -15.772 -16.017 -23.929 -2.308 2.647 -0.888 N5 A1AVF 3 A1AVF C13 C2 C 0 1 N N N N N N -14.462 -8.474 -24.488 5.081 0.749 -0.057 C13 A1AVF 4 A1AVF C12 C3 C 0 1 N N N N N N -14.265 -9.749 -23.648 3.889 1.399 0.653 C12 A1AVF 5 A1AVF C17 C4 C 0 1 N N N N N N -13.325 -6.701 -25.791 6.479 -1.227 -0.097 C17 A1AVF 6 A1AVF C16 C5 C 0 1 N N N N N N -12.245 -10.278 -24.957 2.833 -0.914 0.786 C16 A1AVF 7 A1AVF C15 C6 C 0 1 N N N N N N -12.451 -9.000 -25.794 4.075 -1.456 0.070 C15 A1AVF 8 A1AVF C11 C7 C 0 1 N N N N N N -14.483 -11.531 -25.484 2.000 0.767 -0.961 C11 A1AVF 9 A1AVF C10 C8 C 0 1 N N N N N N -13.576 -10.861 -24.440 2.643 0.553 0.409 C10 A1AVF 10 A1AVF C22 C9 C 0 1 Y N N N N N -14.981 -16.904 -19.837 -5.168 1.562 2.128 C22 A1AVF 11 A1AVF N2 N3 N 0 1 Y N N N N N -15.706 -14.157 -25.977 0.252 2.574 -1.665 N2 A1AVF 12 A1AVF C1 C10 C 0 1 Y N N N N N -16.448 -15.282 -26.012 -0.591 3.481 -2.125 C1 A1AVF 13 A1AVF C4 C11 C 0 1 Y N N N N N -14.994 -14.918 -23.839 -1.519 1.711 -0.387 C4 A1AVF 14 A1AVF C19 C12 C 0 1 Y N N N N N -12.852 -16.319 -21.607 -4.213 0.110 -0.029 C19 A1AVF 15 A1AVF C20 C13 C 0 1 Y N N N N N -12.663 -17.286 -20.603 -5.566 0.123 0.250 C20 A1AVF 16 A1AVF C21 C14 C 0 1 Y N N N N N -13.739 -17.567 -19.734 -6.044 0.849 1.328 C21 A1AVF 17 A1AVF C3 C15 C 0 1 Y N N N N N -14.972 -13.945 -24.864 -0.175 1.668 -0.791 C3 A1AVF 18 A1AVF C23 C16 C 0 1 Y N N N N N -15.160 -15.939 -20.844 -3.814 1.550 1.853 C23 A1AVF 19 A1AVF C25 C17 C 0 1 N N N N N N -11.742 -15.990 -22.588 -3.692 -0.679 -1.202 C25 A1AVF 20 A1AVF C27 C18 C 0 1 N N N N N N -14.113 -5.620 -25.067 7.682 -0.486 0.490 C27 A1AVF 21 A1AVF C28 C19 C 0 1 N N N N N N -14.771 -4.550 -25.903 9.076 -0.959 0.071 C28 A1AVF 22 A1AVF C29 C20 C 0 1 N N N N N N -15.618 -5.596 -25.222 8.523 0.364 -0.465 C29 A1AVF 23 A1AVF C30 C21 C 0 1 N N N N N N -13.502 -5.207 -23.736 7.510 0.022 1.923 C30 A1AVF 24 A1AVF C31 C22 C 0 1 N N N N N N -12.119 -15.655 -25.044 -3.876 -3.087 -0.660 C31 A1AVF 25 A1AVF C33 C23 C 0 1 N N R N N N -12.678 -17.714 -24.158 -1.780 -2.156 -0.287 C33 A1AVF 26 A1AVF C34 C24 C 0 1 N N R N N N -12.983 -17.780 -25.624 -1.637 -3.635 0.109 C34 A1AVF 27 A1AVF C35 C25 C 0 1 N N N N N N -12.658 -16.436 -26.256 -3.036 -4.226 -0.141 C35 A1AVF 28 A1AVF C36 C26 C 0 1 N N N N N N -11.816 -18.567 -25.064 -0.856 -3.070 -1.093 C36 A1AVF 29 A1AVF C9 C27 C 0 1 N N N N N N -13.482 -12.196 -23.680 1.350 1.173 0.940 C9 A1AVF 30 A1AVF F24 F1 F 0 1 N N N N N N -13.587 -18.479 -18.769 -7.368 0.861 1.599 F24 A1AVF 31 A1AVF N14 N4 N 0 1 N N N N N N -13.166 -7.958 -25.003 5.239 -0.631 0.418 N14 A1AVF 32 A1AVF N26 N5 N 0 1 N N N N N N -12.140 -16.418 -23.932 -3.159 -1.960 -0.732 N26 A1AVF 33 A1AVF N8 N6 N 0 1 N N N N N N -14.152 -12.778 -24.830 0.686 0.703 -0.291 N8 A1AVF 34 A1AVF O32 O1 O 0 1 N N N N N N -11.579 -14.550 -25.127 -5.044 -3.181 -0.974 O32 A1AVF 35 A1AVF O7 O2 O 0 1 N N N N N N -14.245 -14.714 -22.700 -2.001 0.806 0.503 O7 A1AVF 36 A1AVF H1 H1 H 0 1 N N N N N N -14.931 -7.701 -23.861 4.906 0.745 -1.133 H1 A1AVF 37 A1AVF H2 H2 H 0 1 N N N N N N -15.119 -8.704 -25.339 5.987 1.314 0.161 H2 A1AVF 38 A1AVF H3 H3 H 0 1 N N N N N N -13.648 -9.504 -22.771 4.088 1.456 1.723 H3 A1AVF 39 A1AVF H4 H4 H 0 1 N N N N N N -15.249 -10.109 -23.314 3.733 2.403 0.258 H4 A1AVF 40 A1AVF H5 H5 H 0 1 N N N N N N -13.848 -6.943 -26.728 6.497 -1.146 -1.183 H5 A1AVF 41 A1AVF H6 H6 H 0 1 N N N N N N -12.324 -6.306 -26.020 6.524 -2.278 0.191 H6 A1AVF 42 A1AVF H7 H7 H 0 1 N N N N N N -11.747 -11.034 -25.582 1.957 -1.485 0.481 H7 A1AVF 43 A1AVF H8 H8 H 0 1 N N N N N N -11.606 -10.037 -24.095 2.967 -0.998 1.865 H8 A1AVF 44 A1AVF H9 H9 H 0 1 N N N N N N -13.045 -9.246 -26.687 4.253 -2.486 0.381 H9 A1AVF 45 A1AVF H10 H10 H 0 1 N N N N N N -11.470 -8.609 -26.102 3.916 -1.424 -1.008 H10 A1AVF 46 A1AVF H11 H11 H 0 1 N N N N N N -14.135 -11.446 -26.524 2.218 1.743 -1.396 H11 A1AVF 47 A1AVF H12 H12 H 0 1 N N N N N N -15.544 -11.245 -25.428 2.174 -0.054 -1.657 H12 A1AVF 48 A1AVF H13 H13 H 0 1 N N N N N N -15.783 -17.135 -19.152 -5.542 2.127 2.969 H13 A1AVF 49 A1AVF H14 H14 H 0 1 N N N N N N -17.044 -15.456 -26.895 -0.244 4.218 -2.835 H14 A1AVF 50 A1AVF H15 H15 H 0 1 N N N N N N -11.719 -17.800 -20.500 -6.251 -0.432 -0.374 H15 A1AVF 51 A1AVF H16 H16 H 0 1 N N N N N N -16.102 -15.419 -20.941 -3.131 2.105 2.478 H16 A1AVF 52 A1AVF H17 H17 H 0 1 N N N N N N -10.822 -16.516 -22.292 -4.504 -0.860 -1.907 H17 A1AVF 53 A1AVF H18 H18 H 0 1 N N N N N N -11.560 -14.905 -22.587 -2.901 -0.116 -1.697 H18 A1AVF 54 A1AVF H19 H19 H 0 1 N N N N N N -14.659 -4.561 -26.997 9.870 -0.908 0.816 H19 A1AVF 55 A1AVF H20 H20 H 0 1 N N N N N N -14.791 -3.509 -25.547 9.135 -1.798 -0.623 H20 A1AVF 56 A1AVF H21 H21 H 0 1 N N N N N N -16.255 -5.319 -24.369 8.219 0.395 -1.511 H21 A1AVF 57 A1AVF H22 H22 H 0 1 N N N N N N -16.122 -6.370 -25.819 8.953 1.285 -0.072 H22 A1AVF 58 A1AVF H23 H23 H 0 1 N N N N N N -13.063 -6.088 -23.244 7.766 -0.773 2.624 H23 A1AVF 59 A1AVF H24 H24 H 0 1 N N N N N N -12.718 -4.456 -23.910 8.167 0.876 2.087 H24 A1AVF 60 A1AVF H25 H25 H 0 1 N N N N N N -14.283 -4.779 -23.091 6.475 0.324 2.079 H25 A1AVF 61 A1AVF H26 H26 H 0 1 N N N N N N -13.351 -18.197 -23.434 -1.340 -1.371 0.328 H26 A1AVF 62 A1AVF H27 H27 H 0 1 N N N N N N -13.877 -18.323 -25.963 -1.100 -3.948 1.003 H27 A1AVF 63 A1AVF H28 H28 H 0 1 N N N N N N -11.896 -16.535 -27.043 -3.454 -4.609 0.789 H28 A1AVF 64 A1AVF H29 H29 H 0 1 N N N N N N -13.557 -15.960 -26.674 -2.980 -5.021 -0.885 H29 A1AVF 65 A1AVF H30 H30 H 0 1 N N N N N N -11.869 -19.664 -25.003 -1.184 -3.366 -2.089 H30 A1AVF 66 A1AVF H31 H31 H 0 1 N N N N N N -10.784 -18.261 -25.292 0.219 -2.932 -0.973 H31 A1AVF 67 A1AVF H32 H32 H 0 1 N N N N N N -14.052 -12.237 -22.740 0.978 0.694 1.845 H32 A1AVF 68 A1AVF H33 H33 H 0 1 N N N N N N -12.459 -12.560 -23.505 1.392 2.259 1.025 H33 A1AVF 69 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1AVF C35 C34 SING N N 1 A1AVF C35 C31 SING N N 2 A1AVF C1 N2 DOUB Y N 3 A1AVF C1 N6 SING Y N 4 A1AVF N2 C3 SING Y N 5 A1AVF C28 C29 SING N N 6 A1AVF C28 C27 SING N N 7 A1AVF C15 N14 SING N N 8 A1AVF C15 C16 SING N N 9 A1AVF C17 C27 SING N N 10 A1AVF C17 N14 SING N N 11 A1AVF C34 C36 SING N N 12 A1AVF C34 C33 SING N N 13 A1AVF C11 N8 SING N N 14 A1AVF C11 C10 SING N N 15 A1AVF C29 C27 SING N N 16 A1AVF O32 C31 DOUB N N 17 A1AVF C27 C30 SING N N 18 A1AVF C36 C33 SING N N 19 A1AVF C31 N26 SING N N 20 A1AVF N6 N5 DOUB Y N 21 A1AVF N14 C13 SING N N 22 A1AVF C16 C10 SING N N 23 A1AVF C3 N8 SING N N 24 A1AVF C3 C4 DOUB Y N 25 A1AVF N8 C9 SING N N 26 A1AVF C13 C12 SING N N 27 A1AVF C10 C9 SING N N 28 A1AVF C10 C12 SING N N 29 A1AVF C33 N26 SING N N 30 A1AVF N26 C25 SING N N 31 A1AVF N5 C4 SING Y N 32 A1AVF C4 O7 SING N N 33 A1AVF O7 C18 SING N N 34 A1AVF C25 C19 SING N N 35 A1AVF C18 C19 DOUB Y N 36 A1AVF C18 C23 SING Y N 37 A1AVF C19 C20 SING Y N 38 A1AVF C23 C22 DOUB Y N 39 A1AVF C20 C21 DOUB Y N 40 A1AVF C22 C21 SING Y N 41 A1AVF C21 F24 SING N N 42 A1AVF C13 H1 SING N N 43 A1AVF C13 H2 SING N N 44 A1AVF C12 H3 SING N N 45 A1AVF C12 H4 SING N N 46 A1AVF C17 H5 SING N N 47 A1AVF C17 H6 SING N N 48 A1AVF C16 H7 SING N N 49 A1AVF C16 H8 SING N N 50 A1AVF C15 H9 SING N N 51 A1AVF C15 H10 SING N N 52 A1AVF C11 H11 SING N N 53 A1AVF C11 H12 SING N N 54 A1AVF C22 H13 SING N N 55 A1AVF C1 H14 SING N N 56 A1AVF C20 H15 SING N N 57 A1AVF C23 H16 SING N N 58 A1AVF C25 H17 SING N N 59 A1AVF C25 H18 SING N N 60 A1AVF C28 H19 SING N N 61 A1AVF C28 H20 SING N N 62 A1AVF C29 H21 SING N N 63 A1AVF C29 H22 SING N N 64 A1AVF C30 H23 SING N N 65 A1AVF C30 H24 SING N N 66 A1AVF C30 H25 SING N N 67 A1AVF C33 H26 SING N N 68 A1AVF C34 H27 SING N N 69 A1AVF C35 H28 SING N N 70 A1AVF C35 H29 SING N N 71 A1AVF C36 H30 SING N N 72 A1AVF C36 H31 SING N N 73 A1AVF C9 H32 SING N N 74 A1AVF C9 H33 SING N N 75 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1AVF SMILES ACDLabs 12.01 "O=C1CC2CC2N1Cc1cc(F)ccc1Oc1nncnc1N1CC2(CCN(CC2)CC2(C)CC2)C1" A1AVF InChI InChI 1.06 "InChI=1S/C27H33FN6O2/c1-26(4-5-26)14-32-8-6-27(7-9-32)15-33(16-27)24-25(31-30-17-29-24)36-22-3-2-20(28)10-19(22)13-34-21-11-18(21)12-23(34)35/h2-3,10,17-18,21H,4-9,11-16H2,1H3/t18-,21-/m1/s1" A1AVF InChIKey InChI 1.06 LRPNEYBAGFSHDQ-WIYYLYMNSA-N A1AVF SMILES_CANONICAL CACTVS 3.385 "CC1(CC1)CN2CCC3(CC2)CN(C3)c4ncnnc4Oc5ccc(F)cc5CN6[C@@H]7C[C@@H]7CC6=O" A1AVF SMILES CACTVS 3.385 "CC1(CC1)CN2CCC3(CC2)CN(C3)c4ncnnc4Oc5ccc(F)cc5CN6[CH]7C[CH]7CC6=O" A1AVF SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC1(CC1)CN2CCC3(CC2)CN(C3)c4c(nncn4)Oc5ccc(cc5CN6[C@@H]7C[C@@H]7CC6=O)F" A1AVF SMILES "OpenEye OEToolkits" 2.0.7 "CC1(CC1)CN2CCC3(CC2)CN(C3)c4c(nncn4)Oc5ccc(cc5CN6C7CC7CC6=O)F" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1AVF "SYSTEMATIC NAME" ACDLabs 12.01 "(1R,5R)-2-({5-fluoro-2-[(5-{7-[(1-methylcyclopropyl)methyl]-2,7-diazaspiro[3.5]nonan-2-yl}-1,2,4-triazin-6-yl)oxy]phenyl}methyl)-2-azabicyclo[3.1.0]hexan-3-one" A1AVF "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(1~{R},5~{R})-2-[[5-fluoranyl-2-[[5-[7-[(1-methylcyclopropyl)methyl]-2,7-diazaspiro[3.5]nonan-2-yl]-1,2,4-triazin-6-yl]oxy]phenyl]methyl]-2-azabicyclo[3.1.0]hexan-3-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1AVF "Create component" 2024-06-14 RCSB A1AVF "Initial release" 2025-01-15 RCSB #