data_A1AVS # _chem_comp.id A1AVS _chem_comp.name 5-benzyl-1,3-diazinane-2,4,6-trione _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C11 H10 N2 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-06-20 _chem_comp.pdbx_modified_date 2025-06-20 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 218.209 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1AVS _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9CB8 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1AVS C02 C1 C 0 1 N N N N N N -13.711 20.725 -21.607 -2.948 0.774 0.012 C02 A1AVS 1 A1AVS C04 C2 C 0 1 N N N N N N -14.685 21.861 -19.588 -1.936 -1.346 -0.064 C04 A1AVS 2 A1AVS C05 C3 C 0 1 N N N N N N -14.546 20.616 -18.697 -0.612 -0.664 -0.351 C05 A1AVS 3 A1AVS C06 C4 C 0 1 N N N N N N -13.964 20.718 -17.291 0.379 -1.066 0.744 C06 A1AVS 4 A1AVS C14 C5 C 0 1 Y N N N N N -15.076 20.812 -16.242 1.739 -0.504 0.422 C14 A1AVS 5 A1AVS C15 C6 C 0 1 Y N N N N N -15.975 21.781 -16.211 2.096 0.749 0.882 C15 A1AVS 6 A1AVS C16 C7 C 0 1 Y N N N N N -17.055 21.775 -15.128 3.344 1.265 0.587 C16 A1AVS 7 A1AVS C17 C8 C 0 1 Y N N N N N -17.107 20.817 -14.225 4.236 0.526 -0.168 C17 A1AVS 8 A1AVS C18 C9 C 0 1 Y N N N N N -16.071 19.698 -14.267 3.879 -0.728 -0.628 C18 A1AVS 9 A1AVS C19 C10 C 0 1 Y N N N N N -15.135 19.690 -15.202 2.633 -1.245 -0.329 C19 A1AVS 10 A1AVS C22 C11 C 0 1 N N N N N N -13.860 19.508 -19.488 -0.640 0.851 -0.428 C22 A1AVS 11 A1AVS N03 N1 N 0 1 N N N N N N -14.297 21.852 -20.992 -3.021 -0.559 0.098 N03 A1AVS 12 A1AVS N21 N2 N 0 1 N N N N N N -13.503 19.568 -20.871 -1.828 1.463 -0.237 N21 A1AVS 13 A1AVS O01 O1 O 0 1 N N N N N N -13.364 20.721 -22.730 -3.974 1.405 0.166 O01 A1AVS 14 A1AVS O20 O2 O 0 1 N N N N N N -15.178 22.834 -19.169 -2.017 -2.553 0.016 O20 A1AVS 15 A1AVS O23 O3 O 0 1 N N N N N N -13.667 18.503 -18.985 0.366 1.488 -0.653 O23 A1AVS 16 A1AVS H051 H1 H 0 0 N N N N N N -15.577 20.261 -18.550 -0.235 -1.041 -1.302 H051 A1AVS 17 A1AVS H1 H2 H 0 1 N N N N N N -13.353 19.826 -17.089 0.040 -0.673 1.702 H1 A1AVS 18 A1AVS H061 H3 H 0 0 N N N N N N -13.333 21.617 -17.227 0.438 -2.154 0.798 H061 A1AVS 19 A1AVS H151 H4 H 0 0 N N N N N N -15.947 22.572 -16.946 1.399 1.326 1.472 H151 A1AVS 20 A1AVS H161 H5 H 0 0 N N N N N N -17.787 22.569 -15.103 3.623 2.244 0.946 H161 A1AVS 21 A1AVS H171 H6 H 0 0 N N N N N N -17.874 20.824 -13.464 5.211 0.929 -0.399 H171 A1AVS 22 A1AVS H181 H7 H 0 0 N N N N N N -16.102 18.909 -13.530 4.576 -1.304 -1.219 H181 A1AVS 23 A1AVS H191 H8 H 0 0 N N N N N N -14.410 18.890 -15.232 2.356 -2.226 -0.685 H191 A1AVS 24 A1AVS H031 H9 H 0 0 N N N N N N -14.451 22.674 -21.540 -3.878 -0.972 0.283 H031 A1AVS 25 A1AVS H211 H10 H 0 0 N N N N N N -13.099 18.767 -21.313 -1.871 2.431 -0.281 H211 A1AVS 26 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1AVS O01 C02 DOUB N N 1 A1AVS C02 N03 SING N N 2 A1AVS C02 N21 SING N N 3 A1AVS N03 C04 SING N N 4 A1AVS N21 C22 SING N N 5 A1AVS C04 O20 DOUB N N 6 A1AVS C04 C05 SING N N 7 A1AVS C22 O23 DOUB N N 8 A1AVS C22 C05 SING N N 9 A1AVS C05 C06 SING N N 10 A1AVS C06 C14 SING N N 11 A1AVS C14 C15 DOUB Y N 12 A1AVS C14 C19 SING Y N 13 A1AVS C15 C16 SING Y N 14 A1AVS C19 C18 DOUB Y N 15 A1AVS C16 C17 DOUB Y N 16 A1AVS C18 C17 SING Y N 17 A1AVS C05 H051 SING N N 18 A1AVS C06 H1 SING N N 19 A1AVS C06 H061 SING N N 20 A1AVS C15 H151 SING N N 21 A1AVS C16 H161 SING N N 22 A1AVS C17 H171 SING N N 23 A1AVS C18 H181 SING N N 24 A1AVS C19 H191 SING N N 25 A1AVS N03 H031 SING N N 26 A1AVS N21 H211 SING N N 27 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1AVS SMILES ACDLabs 12.01 "O=C1NC(=O)NC(=O)C1Cc1ccccc1" A1AVS InChI InChI 1.06 "InChI=1S/C11H10N2O3/c14-9-8(10(15)13-11(16)12-9)6-7-4-2-1-3-5-7/h1-5,8H,6H2,(H2,12,13,14,15,16)" A1AVS InChIKey InChI 1.06 MENIJRPFVLNJIH-UHFFFAOYSA-N A1AVS SMILES_CANONICAL CACTVS 3.385 "O=C1NC(=O)C(Cc2ccccc2)C(=O)N1" A1AVS SMILES CACTVS 3.385 "O=C1NC(=O)C(Cc2ccccc2)C(=O)N1" A1AVS SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)CC2C(=O)NC(=O)NC2=O" A1AVS SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)CC2C(=O)NC(=O)NC2=O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1AVS "SYSTEMATIC NAME" ACDLabs 12.01 5-benzyl-1,3-diazinane-2,4,6-trione A1AVS "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "5-(phenylmethyl)-1,3-diazinane-2,4,6-trione" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1AVS "Create component" 2024-06-20 RCSB A1AVS "Modify PCM" 2024-09-27 PDBE A1AVS "Initial release" 2025-06-25 RCSB # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1AVS _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C06 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #