data_A1AVT # _chem_comp.id A1AVT _chem_comp.name "(5S)-6-oxo-6H-dipyrido[1,2-b:1',2'-j]quinolizino[3,2-f][2,8]phenanthroline-12,19-diium" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C27 H17 N3 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 2 _chem_comp.pdbx_initial_date 2024-06-21 _chem_comp.pdbx_modified_date 2025-08-22 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 399.443 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1AVT _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9C73 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1AVT C10 C1 C 0 1 N N N N N N -4.570 -28.980 -3.654 4.262 -2.429 0.001 C10 A1AVT 1 A1AVT C13 C2 C 0 1 Y N N N N N -6.806 -25.660 -8.613 -2.168 -1.958 0.000 C13 A1AVT 2 A1AVT C15 C3 C 0 1 Y N N N N N -8.334 -24.355 -9.770 -4.383 -2.588 0.000 C15 A1AVT 3 A1AVT C17 C4 C 0 1 Y N N N N N -7.888 -23.647 -12.007 -6.139 -0.971 0.001 C17 A1AVT 4 A1AVT C20 C5 C 0 1 Y N N N N N -5.069 -25.686 -10.728 -2.878 0.708 -0.001 C20 A1AVT 5 A1AVT C21 C6 C 0 1 Y N N N N N -4.718 -26.376 -9.541 -1.536 0.373 -0.001 C21 A1AVT 6 A1AVT C22 C7 C 0 1 Y N N N N N -3.461 -27.104 -9.413 -0.490 1.410 -0.001 C22 A1AVT 7 A1AVT C26 C8 C 0 1 Y N N N N N 0.630 -28.364 -11.538 0.665 5.984 0.000 C26 A1AVT 8 A1AVT C28 C9 C 0 1 Y N N N N N 0.215 -29.096 -9.333 2.421 4.380 0.000 C28 A1AVT 9 A1AVT C02 C10 C 0 1 N N N N N N -3.846 -28.430 -5.836 2.601 -0.779 0.000 C02 A1AVT 10 A1AVT C03 C11 C 0 1 Y N N N N N -4.086 -27.763 -7.103 1.250 -0.391 -0.000 C03 A1AVT 11 A1AVT C04 C12 C 0 1 Y N N N N N -5.263 -27.066 -7.265 0.247 -1.384 -0.000 C04 A1AVT 12 A1AVT C05 C13 C 0 1 N N N N N N -6.203 -27.012 -6.217 0.623 -2.726 0.001 C05 A1AVT 13 A1AVT C06 C14 C 0 1 N N N N N N -5.913 -27.686 -5.009 1.975 -3.061 0.001 C06 A1AVT 14 A1AVT C07 C15 C 0 1 N N N N N N -6.900 -27.601 -3.989 2.353 -4.419 0.002 C07 A1AVT 15 A1AVT C08 C16 C 0 1 N N N N N N -6.681 -28.235 -2.774 3.675 -4.745 -0.005 C08 A1AVT 16 A1AVT C09 C17 C 0 1 N N N N N N -5.487 -28.941 -2.612 4.640 -3.725 0.001 C09 A1AVT 17 A1AVT C12 C18 C 0 1 Y N N N N N -5.591 -26.361 -8.496 -1.175 -1.000 -0.000 C12 A1AVT 18 A1AVT C16 C19 C 0 1 Y N N N N N -8.734 -23.664 -10.899 -5.710 -2.303 0.001 C16 A1AVT 19 A1AVT C18 C20 C 0 1 Y N N N N N -6.685 -24.346 -11.959 -5.205 0.021 -0.000 C18 A1AVT 20 A1AVT C19 C21 C 0 1 Y N N N N N -6.327 -25.011 -10.762 -3.837 -0.320 0.000 C19 A1AVT 21 A1AVT C23 C22 C 0 1 Y N N N N N -2.573 -27.103 -10.512 -0.818 2.750 -0.001 C23 A1AVT 22 A1AVT C25 C23 C 0 1 Y N N N N N -0.595 -27.710 -11.537 -0.248 4.981 0.000 C25 A1AVT 23 A1AVT C27 C24 C 0 1 Y N N N N N 1.068 -29.079 -10.426 2.032 5.686 0.001 C27 A1AVT 24 A1AVT C29 C25 C 0 1 Y N N N N N -1.022 -28.406 -9.384 1.438 3.368 -0.000 C29 A1AVT 25 A1AVT C30 C26 C 0 1 Y N N N N N -1.875 -28.444 -8.249 1.844 2.023 -0.000 C30 A1AVT 26 A1AVT C31 C27 C 0 1 Y N N N N N -3.135 -27.777 -8.247 0.878 1.029 -0.001 C31 A1AVT 27 A1AVT N11 N1 N 0 1 N N N N N N -4.808 -28.349 -4.840 2.939 -2.084 0.001 N11 A1AVT 28 A1AVT N14 N2 N 1 1 Y N N N N N -7.134 -24.998 -9.752 -3.461 -1.612 0.000 N14 A1AVT 29 A1AVT N24 N3 N 1 1 Y N N N N N -1.382 -27.759 -10.437 0.131 3.693 -0.000 N24 A1AVT 30 A1AVT O01 O1 O 0 1 N N N N N N -2.876 -29.053 -5.597 3.475 0.073 0.000 O01 A1AVT 31 A1AVT H1 H1 H 0 1 N N N N N N -3.646 -29.523 -3.522 5.014 -1.654 0.005 H1 A1AVT 32 A1AVT H2 H2 H 0 1 N N N N N N -7.492 -25.649 -7.779 -1.898 -3.004 0.000 H2 A1AVT 33 A1AVT H3 H3 H 0 1 N N N N N N -8.975 -24.385 -8.901 -4.063 -3.619 0.000 H3 A1AVT 34 A1AVT H4 H4 H 0 1 N N N N N N -8.163 -23.097 -12.894 -7.193 -0.734 0.000 H4 A1AVT 35 A1AVT H5 H5 H 0 1 N N N N N N -4.406 -25.671 -11.580 -3.184 1.743 -0.001 H5 A1AVT 36 A1AVT H6 H6 H 0 1 N N N N N N 1.255 -28.317 -12.418 0.336 7.013 0.000 H6 A1AVT 37 A1AVT H7 H7 H 0 1 N N N N N N 0.494 -29.636 -8.440 3.469 4.123 -0.000 H7 A1AVT 38 A1AVT H8 H8 H 0 1 N N N N N N -7.127 -26.466 -6.334 -0.129 -3.501 0.000 H8 A1AVT 39 A1AVT H10 H10 H 0 1 N N N N N N -7.812 -27.048 -4.158 1.601 -5.194 0.002 H10 A1AVT 40 A1AVT H11 H11 H 0 1 N N N N N N -7.411 -28.184 -1.979 3.979 -5.781 -0.005 H11 A1AVT 41 A1AVT H12 H12 H 0 1 N N N N N N -5.279 -29.452 -1.684 5.689 -3.978 0.006 H12 A1AVT 42 A1AVT H13 H13 H 0 1 N N N N N N -9.682 -23.148 -10.922 -6.434 -3.104 0.001 H13 A1AVT 43 A1AVT H14 H14 H 0 1 N N N N N N -6.035 -24.380 -12.821 -5.510 1.057 -0.001 H14 A1AVT 44 A1AVT H15 H15 H 0 1 N N N N N N -2.841 -26.579 -11.417 -1.858 3.043 -0.001 H15 A1AVT 45 A1AVT H16 H16 H 0 1 N N N N N N -0.919 -27.164 -12.411 -1.301 5.222 0.000 H16 A1AVT 46 A1AVT H17 H17 H 0 1 N N N N N N 2.019 -29.591 -10.416 2.767 6.478 0.000 H17 A1AVT 47 A1AVT H18 H18 H 0 1 N N N N N N -1.563 -28.989 -7.370 2.893 1.768 -0.000 H18 A1AVT 48 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1AVT C17 C18 DOUB Y N 1 A1AVT C17 C16 SING Y N 2 A1AVT C18 C19 SING Y N 3 A1AVT C26 C25 DOUB Y N 4 A1AVT C26 C27 SING Y N 5 A1AVT C25 N24 SING Y N 6 A1AVT C16 C15 DOUB Y N 7 A1AVT C19 C20 DOUB Y N 8 A1AVT C19 N14 SING Y N 9 A1AVT C20 C21 SING Y N 10 A1AVT C23 N24 DOUB Y N 11 A1AVT C23 C22 SING Y N 12 A1AVT N24 C29 SING Y N 13 A1AVT C27 C28 DOUB Y N 14 A1AVT C15 N14 SING Y N 15 A1AVT N14 C13 DOUB Y N 16 A1AVT C21 C22 DOUB Y N 17 A1AVT C21 C12 SING Y N 18 A1AVT C22 C31 SING Y N 19 A1AVT C29 C28 SING Y N 20 A1AVT C29 C30 DOUB Y N 21 A1AVT C13 C12 SING Y N 22 A1AVT C12 C04 DOUB Y N 23 A1AVT C30 C31 SING Y N 24 A1AVT C31 C03 DOUB Y N 25 A1AVT C04 C03 SING Y N 26 A1AVT C04 C05 SING N N 27 A1AVT C03 C02 SING N N 28 A1AVT C05 C06 DOUB N N 29 A1AVT C02 O01 DOUB N N 30 A1AVT C02 N11 SING N N 31 A1AVT C06 N11 SING N N 32 A1AVT C06 C07 SING N N 33 A1AVT N11 C10 SING N N 34 A1AVT C07 C08 DOUB N N 35 A1AVT C10 C09 DOUB N N 36 A1AVT C08 C09 SING N N 37 A1AVT C10 H1 SING N N 38 A1AVT C13 H2 SING N N 39 A1AVT C15 H3 SING N N 40 A1AVT C17 H4 SING N N 41 A1AVT C20 H5 SING N N 42 A1AVT C26 H6 SING N N 43 A1AVT C28 H7 SING N N 44 A1AVT C05 H8 SING N N 45 A1AVT C07 H10 SING N N 46 A1AVT C08 H11 SING N N 47 A1AVT C09 H12 SING N N 48 A1AVT C16 H13 SING N N 49 A1AVT C18 H14 SING N N 50 A1AVT C23 H15 SING N N 51 A1AVT C25 H16 SING N N 52 A1AVT C27 H17 SING N N 53 A1AVT C30 H18 SING N N 54 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1AVT SMILES ACDLabs 12.01 "O=C1c2c(C=C3C=CC=CN31)c1c[n+]3ccccc3cc1c1c[n+]3ccccc3cc21" A1AVT InChI InChI 1.06 "InChI=1S/C27H17N3O/c31-27-26-22-14-19-8-2-5-11-29(19)16-24(22)21-13-18-7-1-4-10-28(18)17-25(21)23(26)15-20-9-3-6-12-30(20)27/h1-17H/q+2" A1AVT InChIKey InChI 1.06 XPULADKVNXYMFV-UHFFFAOYSA-N A1AVT SMILES_CANONICAL CACTVS 3.385 "O=C1N2C=CC=CC2=Cc3c4c[n+]5ccccc5cc4c6c[n+]7ccccc7cc6c13" A1AVT SMILES CACTVS 3.385 "O=C1N2C=CC=CC2=Cc3c4c[n+]5ccccc5cc4c6c[n+]7ccccc7cc6c13" A1AVT SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc[n+]2cc3c(cc2c1)c4c[n+]5ccccc5cc4c6c3C=C7C=CC=CN7C6=O" A1AVT SMILES "OpenEye OEToolkits" 2.0.7 "c1cc[n+]2cc3c(cc2c1)c4c[n+]5ccccc5cc4c6c3C=C7C=CC=CN7C6=O" # _pdbx_chem_comp_identifier.comp_id A1AVT _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program ACDLabs _pdbx_chem_comp_identifier.program_version 12.01 _pdbx_chem_comp_identifier.identifier "(5S)-6-oxo-6H-dipyrido[1,2-b:1',2'-j]quinolizino[3,2-f][2,8]phenanthroline-12,19-diium" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1AVT "Create component" 2024-06-21 RCSB A1AVT "Initial release" 2025-08-27 RCSB #