data_A1AWD
#
_chem_comp.id A1AWD
_chem_comp.name "N-{5-[(4bS,8R,8aS,15bR)-1,8a-dihydroxy-5,6,8,8a,9,15b-hexahydro-7H-4,8-methano[1]benzofuro[3,2-c]pyrido[3,4-b]acridin-7-yl]pentyl}guanidine"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C29 H33 N5 O3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2024-07-01
_chem_comp.pdbx_modified_date 2025-03-28
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 499.604
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code A1AWD
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 9CGK
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
_chem_comp.pdbx_pcm ?
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
A1AWD C28 C1 C 0 1 Y N N N N N 124.579 130.959 91.535 -3.315 -0.918 -0.655 C28 A1AWD 1
A1AWD C27 C2 C 0 1 Y N N N N N 124.175 130.568 90.278 -4.335 -1.535 -1.329 C27 A1AWD 2
A1AWD C1 C3 C 0 1 N N N N N N 122.952 126.969 102.967 10.209 -0.711 0.315 C1 A1AWD 3
A1AWD C10 C4 C 0 1 N N S N N N 125.609 131.628 94.147 -1.075 0.229 0.722 C10 A1AWD 4
A1AWD C11 C5 C 0 1 N N N N N N 125.707 132.407 95.465 0.090 0.235 1.706 C11 A1AWD 5
A1AWD C12 C6 C 0 1 N N N N N N 125.506 131.510 96.675 1.387 0.516 0.940 C12 A1AWD 6
A1AWD C13 C7 C 0 1 Y N N N N N 126.697 130.625 94.003 -1.148 1.544 -0.013 C13 A1AWD 7
A1AWD C14 C8 C 0 1 Y N N N N N 126.695 129.331 94.459 -0.457 1.883 -1.154 C14 A1AWD 8
A1AWD C15 C9 C 0 1 Y N N N N N 127.846 128.581 94.195 -0.676 3.162 -1.635 C15 A1AWD 9
A1AWD C16 C10 C 0 1 Y N N N N N 128.927 129.137 93.512 -1.598 3.991 -1.018 C16 A1AWD 10
A1AWD C17 C11 C 0 1 Y N N N N N 128.899 130.465 93.063 -2.361 3.599 0.080 C17 A1AWD 11
A1AWD C18 C12 C 0 1 Y N N N N N 127.743 131.185 93.316 -2.137 2.312 0.584 C18 A1AWD 12
A1AWD C19 C13 C 0 1 N N R N N N 126.001 132.546 92.968 -2.417 0.206 1.434 C19 A1AWD 13
A1AWD C2 C14 C 0 1 N N N N N N 121.814 128.513 101.423 7.815 -0.538 -0.222 C2 A1AWD 14
A1AWD C20 C15 C 0 1 Y N N N N N 125.494 132.038 91.644 -3.501 -0.477 0.649 C20 A1AWD 15
A1AWD C21 C16 C 0 1 Y N N N N N 125.561 132.294 89.324 -5.698 -1.239 0.657 C21 A1AWD 16
A1AWD C22 C17 C 0 1 Y N N N N N 126.061 132.974 88.193 -6.923 -1.415 1.323 C22 A1AWD 17
A1AWD C23 C18 C 0 1 Y N N N N N 125.670 132.602 86.941 -7.960 -2.021 0.683 C23 A1AWD 18
A1AWD C24 C19 C 0 1 Y N N N N N 124.771 131.543 86.753 -7.830 -2.473 -0.629 C24 A1AWD 19
A1AWD C25 C20 C 0 1 Y N N N N N 124.272 130.869 87.825 -6.655 -2.332 -1.302 C25 A1AWD 20
A1AWD C26 C21 C 0 1 Y N N N N N 124.659 131.232 89.138 -5.566 -1.709 -0.674 C26 A1AWD 21
A1AWD C29 C22 C 0 1 N N N N N N 124.044 130.219 92.743 -2.003 -0.732 -1.372 C29 A1AWD 22
A1AWD C3 C23 C 0 1 N N N N N N 122.451 129.212 100.237 6.468 -0.711 0.483 C3 A1AWD 23
A1AWD C4 C24 C 0 1 N N N N N N 122.384 128.414 98.954 5.335 -0.432 -0.506 C4 A1AWD 24
A1AWD C5 C25 C 0 1 N N N N N N 122.679 129.217 97.708 3.988 -0.604 0.199 C5 A1AWD 25
A1AWD C6 C26 C 0 1 N N N N N N 124.036 129.898 97.734 2.855 -0.326 -0.790 C6 A1AWD 26
A1AWD C7 C27 C 0 1 N N R N N N 124.297 129.893 95.285 0.456 -0.466 -1.077 C7 A1AWD 27
A1AWD C8 C28 C 0 1 N N N N N N 125.448 128.844 95.168 0.422 0.866 -1.808 C8 A1AWD 28
A1AWD C9 C29 C 0 1 N N S N N N 124.264 130.897 94.100 -0.855 -0.819 -0.363 C9 A1AWD 29
A1AWD N1 N1 N 0 1 N N N N N N 123.003 127.904 103.899 10.500 -0.367 -0.984 N1 A1AWD 30
A1AWD N2 N2 N 0 1 N N N N N N 122.440 127.247 101.774 8.900 -0.805 0.725 N2 A1AWD 31
A1AWD N3 N3 N 0 1 N N N N N N 124.298 130.690 96.526 1.562 -0.491 -0.113 N3 A1AWD 32
A1AWD N4 N4 N 0 1 Y N N N N N 125.958 132.675 90.575 -4.663 -0.649 1.255 N4 A1AWD 33
A1AWD N5 N5 N 0 1 N N N N N N 123.400 125.754 103.229 11.174 -0.949 1.158 N5 A1AWD 34
A1AWD O1 O1 O 0 1 N N N N N N 123.202 131.846 94.262 -0.789 -2.127 0.209 O1 A1AWD 35
A1AWD O2 O2 O 0 1 N N N N N N 129.939 131.044 92.385 -3.283 4.429 0.638 O2 A1AWD 36
A1AWD O3 O3 O 0 1 N N N N N N 127.459 132.489 92.979 -2.748 1.614 1.564 O3 A1AWD 37
A1AWD H1 H1 H 0 1 N N N N N N 123.482 129.747 90.168 -4.197 -1.880 -2.343 H1 A1AWD 38
A1AWD H2 H2 H 0 1 N N N N N N 126.702 132.872 95.529 -0.068 1.012 2.454 H2 A1AWD 39
A1AWD H3 H3 H 0 1 N N N N N N 124.935 133.191 95.472 0.158 -0.736 2.196 H3 A1AWD 40
A1AWD H4 H4 H 0 1 N N N N N N 126.379 130.849 96.782 1.336 1.507 0.490 H4 A1AWD 41
A1AWD H5 H5 H 0 1 N N N N N N 125.408 132.136 97.574 2.231 0.473 1.628 H5 A1AWD 42
A1AWD H6 H6 H 0 1 N N N N N N 127.898 127.554 94.526 -0.126 3.515 -2.495 H6 A1AWD 43
A1AWD H7 H7 H 0 1 N N N N N N 129.803 128.533 93.325 -1.732 4.990 -1.406 H7 A1AWD 44
A1AWD H8 H8 H 0 1 N N N N N N 125.641 133.569 93.152 -2.312 -0.250 2.419 H8 A1AWD 45
A1AWD H9 H9 H 0 1 N N N N N N 121.878 129.183 102.293 7.880 -1.237 -1.056 H9 A1AWD 46
A1AWD H10 H10 H 0 1 N N N N N N 120.757 128.321 101.184 7.901 0.482 -0.596 H10 A1AWD 47
A1AWD H11 H11 H 0 1 N N N N N N 126.755 133.791 88.320 -7.042 -1.071 2.340 H11 A1AWD 48
A1AWD H12 H12 H 0 1 N N N N N N 126.058 133.130 86.083 -8.899 -2.154 1.199 H12 A1AWD 49
A1AWD H13 H13 H 0 1 N N N N N N 124.473 131.261 85.754 -8.669 -2.950 -1.114 H13 A1AWD 50
A1AWD H14 H14 H 0 1 N N N N N N 123.579 130.055 87.674 -6.565 -2.687 -2.319 H14 A1AWD 51
A1AWD H15 H15 H 0 1 N N N N N N 122.961 130.088 92.604 -1.886 -1.512 -2.124 H15 A1AWD 52
A1AWD H16 H16 H 0 1 N N N N N N 124.531 129.233 92.777 -1.988 0.244 -1.856 H16 A1AWD 53
A1AWD H17 H17 H 0 1 N N N N N N 123.508 129.402 100.473 6.382 -1.731 0.857 H17 A1AWD 54
A1AWD H18 H18 H 0 1 N N N N N N 121.933 130.169 100.078 6.403 -0.012 1.317 H18 A1AWD 55
A1AWD H19 H19 H 0 1 N N N N N N 121.372 127.994 98.862 5.421 0.588 -0.880 H19 A1AWD 56
A1AWD H20 H20 H 0 1 N N N N N N 123.116 127.596 99.018 5.400 -1.131 -1.340 H20 A1AWD 57
A1AWD H21 H21 H 0 1 N N N N N N 121.904 129.990 97.600 3.902 -1.625 0.573 H21 A1AWD 58
A1AWD H22 H22 H 0 1 N N N N N N 122.646 128.540 96.841 3.923 0.095 1.033 H22 A1AWD 59
A1AWD H23 H23 H 0 1 N N N N N N 124.815 129.126 97.824 2.941 0.695 -1.164 H23 A1AWD 60
A1AWD H24 H24 H 0 1 N N N N N N 124.078 130.565 98.608 2.921 -1.025 -1.624 H24 A1AWD 61
A1AWD H25 H25 H 0 1 N N N N N N 123.353 129.330 95.250 0.648 -1.237 -1.824 H25 A1AWD 62
A1AWD H26 H26 H 0 1 N N N N N N 125.061 127.974 94.617 0.064 0.698 -2.824 H26 A1AWD 63
A1AWD H27 H27 H 0 1 N N N N N N 125.733 128.537 96.185 1.436 1.263 -1.859 H27 A1AWD 64
A1AWD H28 H28 H 0 1 N N N N N N 123.380 127.691 104.800 11.423 -0.301 -1.273 H28 A1AWD 65
A1AWD H29 H29 H 0 1 N N N N N N 122.665 128.824 103.703 9.781 -0.190 -1.611 H29 A1AWD 66
A1AWD H30 H30 H 0 1 N N N N N N 122.488 126.539 101.069 8.695 -1.048 1.642 H30 A1AWD 67
A1AWD H32 H32 H 0 1 N N N N N N 123.749 125.677 104.163 12.098 -0.882 0.869 H32 A1AWD 68
A1AWD H33 H33 H 0 1 N N N N N N 123.300 132.292 95.095 -0.643 -2.832 -0.437 H33 A1AWD 69
A1AWD H34 H34 H 0 1 N N N N N N 130.648 130.418 92.297 -2.931 4.990 1.343 H34 A1AWD 70
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
A1AWD C24 C23 DOUB Y N 1
A1AWD C24 C25 SING Y N 2
A1AWD C23 C22 SING Y N 3
A1AWD C25 C26 DOUB Y N 4
A1AWD C22 C21 DOUB Y N 5
A1AWD C26 C21 SING Y N 6
A1AWD C26 C27 SING Y N 7
A1AWD C21 N4 SING Y N 8
A1AWD C27 C28 DOUB Y N 9
A1AWD N4 C20 DOUB Y N 10
A1AWD C28 C20 SING Y N 11
A1AWD C28 C29 SING N N 12
A1AWD C20 C19 SING N N 13
A1AWD O2 C17 SING N N 14
A1AWD C29 C9 SING N N 15
A1AWD C19 O3 SING N N 16
A1AWD C19 C10 SING N N 17
A1AWD O3 C18 SING N N 18
A1AWD C17 C18 DOUB Y N 19
A1AWD C17 C16 SING Y N 20
A1AWD C18 C13 SING Y N 21
A1AWD C16 C15 DOUB Y N 22
A1AWD C13 C10 SING N N 23
A1AWD C13 C14 DOUB Y N 24
A1AWD C9 C10 SING N N 25
A1AWD C9 O1 SING N N 26
A1AWD C9 C7 SING N N 27
A1AWD C10 C11 SING N N 28
A1AWD C15 C14 SING Y N 29
A1AWD C14 C8 SING N N 30
A1AWD C8 C7 SING N N 31
A1AWD C7 N3 SING N N 32
A1AWD C11 C12 SING N N 33
A1AWD N3 C12 SING N N 34
A1AWD N3 C6 SING N N 35
A1AWD C5 C6 SING N N 36
A1AWD C5 C4 SING N N 37
A1AWD C4 C3 SING N N 38
A1AWD C3 C2 SING N N 39
A1AWD C2 N2 SING N N 40
A1AWD N2 C1 SING N N 41
A1AWD C1 N5 DOUB N N 42
A1AWD C1 N1 SING N N 43
A1AWD C27 H1 SING N N 44
A1AWD C11 H2 SING N N 45
A1AWD C11 H3 SING N N 46
A1AWD C12 H4 SING N N 47
A1AWD C12 H5 SING N N 48
A1AWD C15 H6 SING N N 49
A1AWD C16 H7 SING N N 50
A1AWD C19 H8 SING N N 51
A1AWD C2 H9 SING N N 52
A1AWD C2 H10 SING N N 53
A1AWD C22 H11 SING N N 54
A1AWD C23 H12 SING N N 55
A1AWD C24 H13 SING N N 56
A1AWD C25 H14 SING N N 57
A1AWD C29 H15 SING N N 58
A1AWD C29 H16 SING N N 59
A1AWD C3 H17 SING N N 60
A1AWD C3 H18 SING N N 61
A1AWD C4 H19 SING N N 62
A1AWD C4 H20 SING N N 63
A1AWD C5 H21 SING N N 64
A1AWD C5 H22 SING N N 65
A1AWD C6 H23 SING N N 66
A1AWD C6 H24 SING N N 67
A1AWD C7 H25 SING N N 68
A1AWD C8 H26 SING N N 69
A1AWD C8 H27 SING N N 70
A1AWD N1 H28 SING N N 71
A1AWD N1 H29 SING N N 72
A1AWD N2 H30 SING N N 73
A1AWD N5 H32 SING N N 74
A1AWD O1 H33 SING N N 75
A1AWD O2 H34 SING N N 76
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
A1AWD SMILES ACDLabs 12.01 "N=C(N)NCCCCCN1CCC23c4c5OC2c2nc6ccccc6cc2CC3(O)C1Cc4ccc5O"
A1AWD InChI InChI 1.06 "InChI=1S/C29H33N5O3/c30-27(31)32-11-4-1-5-12-34-13-10-28-23-18-8-9-21(35)25(23)37-26(28)24-19(16-29(28,36)22(34)15-18)14-17-6-2-3-7-20(17)33-24/h2-3,6-9,14,22,26,35-36H,1,4-5,10-13,15-16H2,(H4,30,31,32)/t22-,26+,28+,29-/m1/s1"
A1AWD InChIKey InChI 1.06 WEQLQEBFUICRPW-KFDULEKRSA-N
A1AWD SMILES_CANONICAL CACTVS 3.385 "NC(=N)NCCCCCN1CC[C@]23[C@H]4Oc5c(O)ccc(C[C@@H]1[C@]2(O)Cc6cc7ccccc7nc46)c35"
A1AWD SMILES CACTVS 3.385 "NC(=N)NCCCCCN1CC[C]23[CH]4Oc5c(O)ccc(C[CH]1[C]2(O)Cc6cc7ccccc7nc46)c35"
A1AWD SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[H]/N=C(/N)\NCCCCCN1CC[C@]23c4c5ccc(c4O[C@H]2c6c(cc7ccccc7n6)C[C@]3([C@H]1C5)O)O"
A1AWD SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)cc3c(n2)C4C56CCN(C(C5(C3)O)Cc7c6c(c(cc7)O)O4)CCCCCNC(=N)N"
#
_pdbx_chem_comp_identifier.comp_id A1AWD
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program ACDLabs
_pdbx_chem_comp_identifier.program_version 12.01
_pdbx_chem_comp_identifier.identifier "N-{5-[(4bS,8R,8aS,15bR)-1,8a-dihydroxy-5,6,8,8a,9,15b-hexahydro-7H-4,8-methano[1]benzofuro[3,2-c]pyrido[3,4-b]acridin-7-yl]pentyl}guanidine"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
A1AWD "Create component" 2024-07-01 RCSB
A1AWD "Initial release" 2025-04-02 RCSB
#