data_A1AWF
#
_chem_comp.id A1AWF
_chem_comp.name "(2S,4R,5S,6S,8R,12R,13R)-5,13-dihydroxy-2,4,6,8,12-pentamethyl-3,9-dioxopentadecanal"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C20 H36 O5"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2024-07-01
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 356.497
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code A1AWF
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 9CGN
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
_chem_comp.pdbx_pcm Y
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
A1AWF C1 C1 C 0 1 N N N N N N 47.429 36.797 102.599 6.949 1.002 -0.182 C1 A1AWF 1
A1AWF C2 C2 C 0 1 N N S N N N 47.298 37.956 103.621 5.556 1.499 -0.472 C2 A1AWF 2
A1AWF C3 C3 C 0 1 N N N N N N 46.745 37.401 104.973 4.556 0.664 0.286 C3 A1AWF 3
A1AWF C4 C4 C 0 1 N N R N N N 45.911 38.244 105.983 3.173 0.452 -0.273 C4 A1AWF 4
A1AWF C5 C5 C 0 1 N N S N N N 44.498 37.623 106.120 2.591 -0.848 0.285 C5 A1AWF 5
A1AWF C6 C6 C 0 1 N N S N N N 43.782 37.665 104.760 1.240 -1.127 -0.377 C6 A1AWF 6
A1AWF C7 C7 C 0 1 N N N N N N 43.663 39.158 104.357 0.657 -2.427 0.181 C7 A1AWF 7
A1AWF C8 C8 C 0 1 N N R N N N 42.974 39.371 102.985 -0.756 -2.630 -0.368 C8 A1AWF 8
A1AWF C9 C9 C 0 1 N N N N N N 43.866 38.952 101.809 -1.661 -1.547 0.160 C9 A1AWF 9
A1AWF C10 C10 C 0 1 N N N N N N 45.079 39.817 101.384 -2.897 -1.156 -0.608 C10 A1AWF 10
A1AWF C11 C11 C 0 1 N N N N N N 45.658 39.262 100.323 -3.632 -0.043 0.140 C11 A1AWF 11
A1AWF C12 C12 C 0 1 N N R N N N 46.881 39.868 99.587 -4.887 0.354 -0.639 C12 A1AWF 12
A1AWF C13 C13 C 0 1 N N R N N N 47.767 38.611 99.244 -5.555 1.550 0.042 C13 A1AWF 13
A1AWF C14 C14 C 0 1 N N N N N N 47.903 38.313 97.726 -6.810 1.946 -0.738 C14 A1AWF 14
A1AWF C15 C15 C 0 1 N N N N N N 47.846 36.803 97.447 -7.408 3.217 -0.130 C15 A1AWF 15
A1AWF C2C C16 C 0 1 N N N N N N 48.650 38.715 103.787 5.434 2.961 -0.037 C2C A1AWF 16
A1AWF C4C C17 C 0 1 N N N N N N 46.573 38.280 107.378 2.276 1.626 0.127 C4C A1AWF 17
A1AWF C6C C18 C 0 1 N N N N N N 42.431 36.926 104.865 1.430 -1.261 -1.889 C6C A1AWF 18
A1AWF C8C C19 C 0 1 N N N N N N 42.623 40.841 102.674 -1.284 -3.996 0.075 C8C A1AWF 19
A1AWF O1C O1 O 0 1 N N N N N N 46.610 36.627 101.737 7.649 0.607 -1.082 O1C A1AWF 20
A1AWF O3C O2 O 0 1 N N N N N N 46.947 36.264 105.268 4.864 0.164 1.342 O3C A1AWF 21
A1AWF O5C O3 O 0 1 N N N N N N 43.733 38.395 107.026 2.413 -0.723 1.697 O5C A1AWF 22
A1AWF O9C O4 O 0 1 N N N N N N 43.587 37.963 101.192 -1.395 -0.991 1.199 O9C A1AWF 23
A1AWF C12C C20 C 0 0 N N N N N N 47.451 41.122 100.316 -5.862 -0.825 -0.669 C12C A1AWF 24
A1AWF O13C O5 O 0 0 N N N N N N 49.057 38.606 99.839 -5.916 1.196 1.379 O13C A1AWF 25
A1AWF H1 H1 H 0 1 N Y N N N N 48.275 36.128 102.664 7.322 1.005 0.832 H1 A1AWF 26
A1AWF H2 H2 H 0 1 N N N N N N 46.560 38.670 103.227 5.358 1.421 -1.541 H2 A1AWF 27
A1AWF H3 H3 H 0 1 N N N N N N 45.817 39.271 105.601 3.226 0.390 -1.360 H3 A1AWF 28
A1AWF H4 H4 H 0 1 N N N N N N 44.588 36.580 106.458 3.274 -1.671 0.076 H4 A1AWF 29
A1AWF H5 H5 H 0 1 N N N N N N 44.407 37.150 104.016 0.556 -0.304 -0.168 H5 A1AWF 30
A1AWF H6 H6 H 0 1 N N N N N N 44.674 39.588 104.310 1.287 -3.265 -0.118 H6 A1AWF 31
A1AWF H7 H7 H 0 1 N N N N N N 43.077 39.682 105.127 0.620 -2.371 1.269 H7 A1AWF 32
A1AWF H8 H8 H 0 1 N N N N N N 42.050 38.775 102.960 -0.733 -2.585 -1.457 H8 A1AWF 33
A1AWF H9 H9 H 0 1 N N N N N N 45.801 39.871 102.212 -2.613 -0.802 -1.599 H9 A1AWF 34
A1AWF H10 H10 H 0 1 N N N N N N 44.737 40.831 101.129 -3.552 -2.022 -0.706 H10 A1AWF 35
A1AWF H11 H11 H 0 1 N N N N N N 44.867 39.173 99.564 -3.917 -0.397 1.131 H11 A1AWF 36
A1AWF H12 H12 H 0 1 N N N N N N 45.971 38.258 100.645 -2.977 0.823 0.238 H12 A1AWF 37
A1AWF H13 H13 H 0 1 N N N N N N 46.500 40.232 98.622 -4.612 0.623 -1.659 H13 A1AWF 38
A1AWF H14 H14 H 0 1 N N N N N N 47.221 37.752 99.661 -4.860 2.390 0.064 H14 A1AWF 39
A1AWF H15 H15 H 0 1 N N N N N N 48.865 38.708 97.368 -6.548 2.130 -1.780 H15 A1AWF 40
A1AWF H16 H16 H 0 1 N N N N N N 47.081 38.808 97.188 -7.541 1.139 -0.684 H16 A1AWF 41
A1AWF H17 H17 H 0 1 N N N N N N 47.945 36.625 96.366 -8.302 3.499 -0.686 H17 A1AWF 42
A1AWF H18 H18 H 0 1 N N N N N N 48.668 36.301 97.978 -7.670 3.033 0.911 H18 A1AWF 43
A1AWF H19 H19 H 0 1 N N N N N N 46.884 36.401 97.798 -6.677 4.024 -0.184 H19 A1AWF 44
A1AWF H20 H20 H 0 1 N N N N N N 48.527 39.529 104.516 6.157 3.565 -0.585 H20 A1AWF 45
A1AWF H21 H21 H 0 1 N N N N N N 49.421 38.017 104.145 4.427 3.320 -0.247 H21 A1AWF 46
A1AWF H22 H22 H 0 1 N N N N N N 48.956 39.134 102.817 5.632 3.039 1.032 H22 A1AWF 47
A1AWF H23 H23 H 0 1 N N N N N N 45.957 38.883 108.061 2.691 2.552 -0.270 H23 A1AWF 48
A1AWF H24 H24 H 0 1 N N N N N N 46.659 37.256 107.769 1.276 1.473 -0.277 H24 A1AWF 49
A1AWF H25 H25 H 0 1 N N N N N N 47.575 38.727 107.297 2.223 1.688 1.214 H25 A1AWF 50
A1AWF H26 H26 H 0 1 N N N N N N 42.607 35.879 105.154 1.762 -0.307 -2.299 H26 A1AWF 51
A1AWF H27 H27 H 0 1 N N N N N N 41.804 37.415 105.624 2.179 -2.025 -2.094 H27 A1AWF 52
A1AWF H28 H28 H 0 1 N N N N N N 41.920 36.957 103.892 0.484 -1.546 -2.350 H28 A1AWF 53
A1AWF H29 H29 H 0 1 N N N N N N 41.977 41.240 103.469 -0.682 -4.783 -0.379 H29 A1AWF 54
A1AWF H30 H30 H 0 1 N N N N N N 43.547 41.435 102.620 -1.225 -4.074 1.160 H30 A1AWF 55
A1AWF H31 H31 H 0 1 N N N N N N 42.095 40.896 101.711 -2.322 -4.105 -0.242 H31 A1AWF 56
A1AWF H32 H32 H 0 1 N N N N N N 44.151 38.389 107.879 1.815 -0.008 1.957 H32 A1AWF 57
A1AWF H33 H33 H 0 1 N N N N N N 46.651 41.866 100.446 -6.757 -0.543 -1.225 H33 A1AWF 58
A1AWF H34 H34 H 0 1 N N N N N N 47.841 40.827 101.301 -5.387 -1.678 -1.155 H34 A1AWF 59
A1AWF H35 H35 H 0 1 N N N N N N 48.263 41.558 99.715 -6.138 -1.095 0.350 H35 A1AWF 60
A1AWF H36 H36 H 0 1 N N N N N N 48.978 38.788 100.768 -6.534 0.454 1.436 H36 A1AWF 61
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
A1AWF C15 C14 SING N N 1
A1AWF C14 C13 SING N N 2
A1AWF C13 C12 SING N N 3
A1AWF C13 O13C SING N N 4
A1AWF C12 C12C SING N N 5
A1AWF C12 C11 SING N N 6
A1AWF C11 C10 SING N N 7
A1AWF O9C C9 DOUB N N 8
A1AWF C10 C9 SING N N 9
A1AWF O1C C1 DOUB N N 10
A1AWF C9 C8 SING N N 11
A1AWF C1 C2 SING N N 12
A1AWF C8C C8 SING N N 13
A1AWF C8 C7 SING N N 14
A1AWF C2 C2C SING N N 15
A1AWF C2 C3 SING N N 16
A1AWF C7 C6 SING N N 17
A1AWF C6 C6C SING N N 18
A1AWF C6 C5 SING N N 19
A1AWF C3 O3C DOUB N N 20
A1AWF C3 C4 SING N N 21
A1AWF C4 C5 SING N N 22
A1AWF C4 C4C SING N N 23
A1AWF C5 O5C SING N N 24
A1AWF C1 H1 SING N N 25
A1AWF C2 H2 SING N N 26
A1AWF C4 H3 SING N N 27
A1AWF C5 H4 SING N N 28
A1AWF C6 H5 SING N N 29
A1AWF C7 H6 SING N N 30
A1AWF C7 H7 SING N N 31
A1AWF C8 H8 SING N N 32
A1AWF C10 H9 SING N N 33
A1AWF C10 H10 SING N N 34
A1AWF C11 H11 SING N N 35
A1AWF C11 H12 SING N N 36
A1AWF C12 H13 SING N N 37
A1AWF C13 H14 SING N N 38
A1AWF C14 H15 SING N N 39
A1AWF C14 H16 SING N N 40
A1AWF C15 H17 SING N N 41
A1AWF C15 H18 SING N N 42
A1AWF C15 H19 SING N N 43
A1AWF C2C H20 SING N N 44
A1AWF C2C H21 SING N N 45
A1AWF C2C H22 SING N N 46
A1AWF C4C H23 SING N N 47
A1AWF C4C H24 SING N N 48
A1AWF C4C H25 SING N N 49
A1AWF C6C H26 SING N N 50
A1AWF C6C H27 SING N N 51
A1AWF C6C H28 SING N N 52
A1AWF C8C H29 SING N N 53
A1AWF C8C H30 SING N N 54
A1AWF C8C H31 SING N N 55
A1AWF O5C H32 SING N N 56
A1AWF C12C H33 SING N N 57
A1AWF C12C H34 SING N N 58
A1AWF C12C H35 SING N N 59
A1AWF O13C H36 SING N N 60
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
A1AWF SMILES ACDLabs 12.01 "CC(CC(C)C(=O)CCC(C)C(O)CC)C(O)C(C)C(=O)C(C)C=O"
A1AWF InChI InChI 1.06 "InChI=1S/C20H36O5/c1-7-17(22)12(2)8-9-18(23)13(3)10-14(4)19(24)16(6)20(25)15(5)11-21/h11-17,19,22,24H,7-10H2,1-6H3/t12-,13-,14+,15+,16-,17-,19+/m1/s1"
A1AWF InChIKey InChI 1.06 LWRZYDNPGZEYIZ-AEUCKGDRSA-N
A1AWF SMILES_CANONICAL CACTVS 3.385 "CC[C@@H](O)[C@H](C)CCC(=O)[C@H](C)C[C@H](C)[C@H](O)[C@@H](C)C(=O)[C@@H](C)C=O"
A1AWF SMILES CACTVS 3.385 "CC[CH](O)[CH](C)CCC(=O)[CH](C)C[CH](C)[CH](O)[CH](C)C(=O)[CH](C)C=O"
A1AWF SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC[C@H]([C@H](C)CCC(=O)[C@H](C)C[C@H](C)[C@@H]([C@@H](C)C(=O)[C@@H](C)C=O)O)O"
A1AWF SMILES "OpenEye OEToolkits" 2.0.7 "CCC(C(C)CCC(=O)C(C)CC(C)C(C(C)C(=O)C(C)C=O)O)O"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
A1AWF "SYSTEMATIC NAME" ACDLabs 12.01 "(2S,4R,5S,6S,8R,12R,13R)-5,13-dihydroxy-2,4,6,8,12-pentamethyl-3,9-dioxopentadecanal"
A1AWF "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S},4~{R},5~{S},6~{S},8~{R},12~{R},13~{R})-2,4,6,8,12-pentamethyl-5,13-bis(oxidanyl)-3,9-bis(oxidanylidene)pentadecanal"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
A1AWF "Create component" 2024-07-01 RCSB
A1AWF "Initial release" 2024-09-18 RCSB
A1AWF "Modify PCM" 2024-09-27 PDBE
#
_pdbx_chem_comp_pcm.pcm_id 1
_pdbx_chem_comp_pcm.comp_id A1AWF
_pdbx_chem_comp_pcm.modified_residue_id DPP
_pdbx_chem_comp_pcm.type None
_pdbx_chem_comp_pcm.category Lipid/lipid-like
_pdbx_chem_comp_pcm.position "Amino-acid side chain"
_pdbx_chem_comp_pcm.polypeptide_position "Any position"
_pdbx_chem_comp_pcm.comp_id_linking_atom C1
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom NG
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ?
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ?
#