data_A1AWG # _chem_comp.id A1AWG _chem_comp.name "N-[(2R)-1-(naphthalen-1-yl)propan-2-yl]-2-[3-oxo-3-(2-{4-oxo-4-[(pyridin-3-yl)amino]butanoyl}hydrazin-1-yl)propyl]benzamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C32 H33 N5 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-07-01 _chem_comp.pdbx_modified_date 2025-11-28 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 551.636 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1AWG _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9CEH _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1AWG C10 C1 C 0 1 Y N N N N N -8.165 32.072 -2.135 4.597 5.040 -0.815 C10 A1AWG 1 A1AWG C13 C2 C 0 1 Y N N N N N -10.044 31.946 -4.179 3.972 2.503 0.101 C13 A1AWG 2 A1AWG C15 C3 C 0 1 N N N N N N -11.067 31.882 -5.318 3.645 1.143 0.581 C15 A1AWG 3 A1AWG C17 C4 C 0 1 N N N N N N -11.699 33.330 -2.789 1.917 2.434 -1.348 C17 A1AWG 4 A1AWG C24 C5 C 0 1 N N N N N N -16.954 34.761 2.512 -5.085 0.520 -0.391 C24 A1AWG 5 A1AWG C28 C6 C 0 1 N N N N N N -15.825 33.907 1.903 -3.856 1.221 0.127 C28 A1AWG 6 A1AWG C01 C7 C 0 1 N N N N N N -14.406 30.165 -5.974 3.250 -0.760 3.077 C01 A1AWG 7 A1AWG C03 C8 C 0 1 N N R N N N -13.239 31.061 -6.305 4.179 -0.857 1.866 C03 A1AWG 8 A1AWG C04 C9 C 0 1 N N N N N N -12.621 30.324 -7.468 5.466 -1.580 2.267 C04 A1AWG 9 A1AWG C05 C10 C 0 1 Y N N N N N -13.040 33.505 -9.619 8.195 -1.075 -0.297 C05 A1AWG 10 A1AWG C06 C11 C 0 1 Y N N N N N -13.196 32.589 -8.563 7.378 -0.919 0.821 C06 A1AWG 11 A1AWG C07 C12 C 0 1 Y N N N N N -12.509 31.360 -8.580 6.338 -1.766 1.052 C07 A1AWG 12 A1AWG C08 C13 C 0 1 Y N N N N N -12.185 33.166 -10.672 7.974 -2.076 -1.193 C08 A1AWG 13 A1AWG C09 C14 C 0 1 Y N N N N N -7.883 31.403 -3.325 5.417 4.422 0.112 C09 A1AWG 14 A1AWG C11 C15 C 0 1 Y N N N N N -9.397 32.692 -1.970 3.463 4.399 -1.282 C11 A1AWG 15 A1AWG C12 C16 C 0 1 Y N N N N N -10.339 32.635 -2.993 3.146 3.135 -0.830 C12 A1AWG 16 A1AWG C14 C17 C 0 1 Y N N N N N -8.816 31.337 -4.351 5.108 3.159 0.576 C14 A1AWG 17 A1AWG C18 C18 C 0 1 N N N N N N -12.166 33.025 -1.370 0.780 2.580 -0.334 C18 A1AWG 18 A1AWG C19 C19 C 0 1 N N N N N N -13.295 33.913 -0.856 -0.449 1.879 -0.852 C19 A1AWG 19 A1AWG C23 C20 C 0 1 N N N N N N -17.509 35.982 1.737 -6.222 0.667 0.623 C23 A1AWG 20 A1AWG C25 C21 C 0 1 N N N N N N -18.570 36.743 2.540 -7.451 -0.035 0.105 C25 A1AWG 21 A1AWG C30 C22 C 0 1 Y N N N N N -20.700 37.937 2.798 -9.691 -0.779 0.407 C30 A1AWG 22 A1AWG C31 C23 C 0 1 Y N N N N N -21.669 37.284 3.541 -9.515 -1.975 -0.285 C31 A1AWG 23 A1AWG C32 C24 C 0 1 Y N N N N N -22.460 38.068 4.372 -10.641 -2.676 -0.683 C32 A1AWG 24 A1AWG C33 C25 C 0 1 Y N N N N N -22.244 39.445 4.453 -11.893 -2.171 -0.382 C33 A1AWG 25 A1AWG C35 C26 C 0 1 Y N N N N N -20.526 39.310 2.914 -10.980 -0.337 0.672 C35 A1AWG 26 A1AWG C36 C27 C 0 1 Y N N N N N -11.648 31.020 -9.634 6.081 -2.814 0.152 C36 A1AWG 27 A1AWG C37 C28 C 0 1 Y N N N N N -11.490 31.901 -10.666 6.906 -2.966 -0.990 C37 A1AWG 28 A1AWG C38 C29 C 0 1 Y N N N N N -10.993 29.775 -9.562 5.016 -3.708 0.358 C38 A1AWG 29 A1AWG C39 C30 C 0 1 Y N N N N N -10.139 29.421 -10.598 4.798 -4.711 -0.535 C39 A1AWG 30 A1AWG C40 C31 C 0 1 Y N N N N N -9.959 30.311 -11.665 5.615 -4.867 -1.654 C40 A1AWG 31 A1AWG C41 C32 C 0 1 Y N N N N N -10.615 31.543 -11.725 6.646 -4.011 -1.893 C41 A1AWG 32 A1AWG N02 N1 N 0 1 N N N N N N -12.294 31.113 -5.205 4.503 0.490 1.390 N02 A1AWG 33 A1AWG N20 N2 N 0 1 N N N N N N -14.278 33.346 0.047 -1.581 1.876 -0.122 N20 A1AWG 34 A1AWG N22 N3 N 0 1 N N N N N N -15.327 34.153 0.548 -2.724 1.224 -0.603 N22 A1AWG 35 A1AWG N26 N4 N 0 1 N N N N N N -19.809 37.202 1.903 -8.584 -0.037 0.835 N26 A1AWG 36 A1AWG N34 N5 N 0 1 Y N N N N N -21.302 40.017 3.730 -12.025 -1.036 0.275 N34 A1AWG 37 A1AWG O16 O1 O 0 1 N N N N N N -10.860 32.462 -6.298 2.602 0.615 0.248 O16 A1AWG 38 A1AWG O21 O2 O 0 1 N N N N N N -13.367 35.045 -1.175 -0.419 1.317 -1.926 O21 A1AWG 39 A1AWG O27 O3 O 0 1 N N N N N N -18.420 36.971 3.691 -7.421 -0.597 -0.970 O27 A1AWG 40 A1AWG O29 O4 O 0 1 N N N N N N -15.308 33.048 2.534 -3.886 1.783 1.201 O29 A1AWG 41 A1AWG H1 H1 H 0 1 N N N N N N -7.429 32.108 -1.345 4.840 6.030 -1.172 H1 A1AWG 42 A1AWG H2 H2 H 0 1 N N N N N N -11.588 34.416 -2.922 1.617 2.879 -2.296 H2 A1AWG 43 A1AWG H3 H3 H 0 1 N N N N N N -12.430 32.944 -3.515 2.137 1.376 -1.496 H3 A1AWG 44 A1AWG H4 H4 H 0 1 N N N N N N -16.581 35.140 3.475 -5.385 0.965 -1.340 H4 A1AWG 45 A1AWG H5 H5 H 0 1 N N N N N N -17.803 34.085 2.688 -4.865 -0.537 -0.539 H5 A1AWG 46 A1AWG H6 H6 H 0 1 N N N N N N -14.963 30.586 -5.124 2.332 -0.245 2.791 H6 A1AWG 47 A1AWG H7 H7 H 0 1 N N N N N N -15.071 30.091 -6.847 3.008 -1.762 3.432 H7 A1AWG 48 A1AWG H8 H8 H 0 1 N N N N N N -14.036 29.164 -5.709 3.746 -0.203 3.872 H8 A1AWG 49 A1AWG H9 H9 H 0 1 N N N N N N -13.579 32.063 -6.605 3.682 -1.414 1.071 H9 A1AWG 50 A1AWG H10 H10 H 0 1 N N N N N N -13.264 29.489 -7.782 6.000 -0.987 3.010 H10 A1AWG 51 A1AWG H11 H11 H 0 1 N N N N N N -11.627 29.939 -7.197 5.220 -2.554 2.690 H11 A1AWG 52 A1AWG H12 H12 H 0 1 N N N N N N -13.568 34.447 -9.616 9.014 -0.389 -0.458 H12 A1AWG 53 A1AWG H13 H13 H 0 1 N N N N N N -13.846 32.830 -7.735 7.574 -0.114 1.514 H13 A1AWG 54 A1AWG H14 H14 H 0 1 N N N N N N -12.044 33.853 -11.493 8.611 -2.180 -2.059 H14 A1AWG 55 A1AWG H15 H15 H 0 1 N N N N N N -6.922 30.928 -3.451 6.300 4.928 0.472 H15 A1AWG 56 A1AWG H16 H16 H 0 1 N N N N N N -9.623 33.216 -1.053 2.824 4.890 -2.001 H16 A1AWG 57 A1AWG H17 H17 H 0 1 N N N N N N -8.585 30.818 -5.269 5.752 2.676 1.296 H17 A1AWG 58 A1AWG H18 H18 H 0 1 N N N N N N -12.513 31.982 -1.342 1.080 2.135 0.615 H18 A1AWG 59 A1AWG H19 H19 H 0 1 N N N N N N -11.305 33.143 -0.695 0.560 3.638 -0.186 H19 A1AWG 60 A1AWG H20 H20 H 0 1 N N N N N N -16.678 36.666 1.511 -5.922 0.222 1.571 H20 A1AWG 61 A1AWG H21 H21 H 0 1 N N N N N N -17.960 35.630 0.798 -6.442 1.724 0.771 H21 A1AWG 62 A1AWG H22 H22 H 0 1 N N N N N N -21.804 36.214 3.478 -8.525 -2.346 -0.507 H22 A1AWG 63 A1AWG H23 H23 H 0 1 N N N N N N -23.244 37.611 4.957 -10.543 -3.607 -1.222 H23 A1AWG 64 A1AWG H24 H24 H 0 1 N N N N N N -22.853 40.046 5.113 -12.774 -2.714 -0.691 H24 A1AWG 65 A1AWG H25 H25 H 0 1 N N N N N N -19.757 39.805 2.339 -11.128 0.589 1.208 H25 A1AWG 66 A1AWG H26 H26 H 0 1 N N N N N N -11.151 29.113 -8.723 4.375 -3.599 1.220 H26 A1AWG 67 A1AWG H27 H27 H 0 1 N N N N N N -9.621 28.473 -10.582 3.979 -5.397 -0.375 H27 A1AWG 68 A1AWG H28 H28 H 0 1 N N N N N N -9.291 30.036 -12.468 5.419 -5.672 -2.347 H28 A1AWG 69 A1AWG H29 H29 H 0 1 N N N N N N -10.460 32.210 -12.560 7.271 -4.145 -2.764 H29 A1AWG 70 A1AWG H30 H30 H 0 1 N N N N N N -12.490 30.614 -4.361 5.335 0.911 1.656 H30 A1AWG 71 A1AWG H31 H31 H 0 1 N N N N N N -14.215 32.385 0.316 -1.605 2.326 0.738 H31 A1AWG 72 A1AWG H32 H32 H 0 1 N N N N N N -15.722 34.880 -0.014 -2.700 0.775 -1.463 H32 A1AWG 73 A1AWG H33 H33 H 0 1 N N N N N N -20.025 37.028 0.942 -8.632 0.475 1.658 H33 A1AWG 74 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1AWG C41 C40 DOUB Y N 1 A1AWG C41 C37 SING Y N 2 A1AWG C40 C39 SING Y N 3 A1AWG C08 C37 DOUB Y N 4 A1AWG C08 C05 SING Y N 5 A1AWG C37 C36 SING Y N 6 A1AWG C39 C38 DOUB Y N 7 A1AWG C36 C38 SING Y N 8 A1AWG C36 C07 DOUB Y N 9 A1AWG C05 C06 DOUB Y N 10 A1AWG C07 C06 SING Y N 11 A1AWG C07 C04 SING N N 12 A1AWG C04 C03 SING N N 13 A1AWG C03 C01 SING N N 14 A1AWG C03 N02 SING N N 15 A1AWG O16 C15 DOUB N N 16 A1AWG C15 N02 SING N N 17 A1AWG C15 C13 SING N N 18 A1AWG C14 C13 DOUB Y N 19 A1AWG C14 C09 SING Y N 20 A1AWG C13 C12 SING Y N 21 A1AWG C09 C10 DOUB Y N 22 A1AWG C12 C17 SING N N 23 A1AWG C12 C11 DOUB Y N 24 A1AWG C17 C18 SING N N 25 A1AWG C10 C11 SING Y N 26 A1AWG C18 C19 SING N N 27 A1AWG O21 C19 DOUB N N 28 A1AWG C19 N20 SING N N 29 A1AWG N20 N22 SING N N 30 A1AWG N22 C28 SING N N 31 A1AWG C23 C24 SING N N 32 A1AWG C23 C25 SING N N 33 A1AWG N26 C25 SING N N 34 A1AWG N26 C30 SING N N 35 A1AWG C28 C24 SING N N 36 A1AWG C28 O29 DOUB N N 37 A1AWG C25 O27 DOUB N N 38 A1AWG C30 C35 DOUB Y N 39 A1AWG C30 C31 SING Y N 40 A1AWG C35 N34 SING Y N 41 A1AWG C31 C32 DOUB Y N 42 A1AWG N34 C33 DOUB Y N 43 A1AWG C32 C33 SING Y N 44 A1AWG C10 H1 SING N N 45 A1AWG C17 H2 SING N N 46 A1AWG C17 H3 SING N N 47 A1AWG C24 H4 SING N N 48 A1AWG C24 H5 SING N N 49 A1AWG C01 H6 SING N N 50 A1AWG C01 H7 SING N N 51 A1AWG C01 H8 SING N N 52 A1AWG C03 H9 SING N N 53 A1AWG C04 H10 SING N N 54 A1AWG C04 H11 SING N N 55 A1AWG C05 H12 SING N N 56 A1AWG C06 H13 SING N N 57 A1AWG C08 H14 SING N N 58 A1AWG C09 H15 SING N N 59 A1AWG C11 H16 SING N N 60 A1AWG C14 H17 SING N N 61 A1AWG C18 H18 SING N N 62 A1AWG C18 H19 SING N N 63 A1AWG C23 H20 SING N N 64 A1AWG C23 H21 SING N N 65 A1AWG C31 H22 SING N N 66 A1AWG C32 H23 SING N N 67 A1AWG C33 H24 SING N N 68 A1AWG C35 H25 SING N N 69 A1AWG C38 H26 SING N N 70 A1AWG C39 H27 SING N N 71 A1AWG C40 H28 SING N N 72 A1AWG C41 H29 SING N N 73 A1AWG N02 H30 SING N N 74 A1AWG N20 H31 SING N N 75 A1AWG N22 H32 SING N N 76 A1AWG N26 H33 SING N N 77 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1AWG SMILES ACDLabs 12.01 "O=C(Nc1cccnc1)CCC(=O)NNC(=O)CCc1ccccc1C(=O)NC(C)Cc1cccc2ccccc21" A1AWG InChI InChI 1.06 "InChI=1S/C32H33N5O4/c1-22(20-25-11-6-10-23-8-2-4-13-27(23)25)34-32(41)28-14-5-3-9-24(28)15-16-30(39)36-37-31(40)18-17-29(38)35-26-12-7-19-33-21-26/h2-14,19,21-22H,15-18,20H2,1H3,(H,34,41)(H,35,38)(H,36,39)(H,37,40)/t22-/m1/s1" A1AWG InChIKey InChI 1.06 RUTWXOPIDMUTLS-JOCHJYFZSA-N A1AWG SMILES_CANONICAL CACTVS 3.385 "C[C@H](Cc1cccc2ccccc12)NC(=O)c3ccccc3CCC(=O)NNC(=O)CCC(=O)Nc4cccnc4" A1AWG SMILES CACTVS 3.385 "C[CH](Cc1cccc2ccccc12)NC(=O)c3ccccc3CCC(=O)NNC(=O)CCC(=O)Nc4cccnc4" A1AWG SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H](Cc1cccc2c1cccc2)NC(=O)c3ccccc3CCC(=O)NNC(=O)CCC(=O)Nc4cccnc4" A1AWG SMILES "OpenEye OEToolkits" 2.0.7 "CC(Cc1cccc2c1cccc2)NC(=O)c3ccccc3CCC(=O)NNC(=O)CCC(=O)Nc4cccnc4" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1AWG "SYSTEMATIC NAME" ACDLabs 12.01 "N-[(2R)-1-(naphthalen-1-yl)propan-2-yl]-2-[3-oxo-3-(2-{4-oxo-4-[(pyridin-3-yl)amino]butanoyl}hydrazin-1-yl)propyl]benzamide" A1AWG "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}-[(2~{R})-1-naphthalen-1-ylpropan-2-yl]-2-[3-oxidanylidene-3-[2-[4-oxidanylidene-4-(pyridin-3-ylamino)butanoyl]hydrazinyl]propyl]benzamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1AWG "Create component" 2024-07-01 RCSB A1AWG "Modify PCM" 2024-09-27 PDBE A1AWG "Initial release" 2025-12-03 RCSB # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1AWG _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C24 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #