data_A1AXF # _chem_comp.id A1AXF _chem_comp.name "1-[5-chloro-4-(difluoromethyl)pyridin-2-yl]piperazine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C10 H12 Cl F2 N3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-07-10 _chem_comp.pdbx_modified_date 2025-03-21 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 247.672 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1AXF _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7H9Y _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1AXF C10 C1 C 0 1 Y N N N N N 4.886 -14.567 -25.313 -1.800 0.942 -0.114 C10 A1AXF 1 A1AXF C7 C2 C 0 1 N N N N N N 4.647 -8.871 -22.730 4.073 -1.342 -0.505 C7 A1AXF 2 A1AXF C8 C3 C 0 1 N N N N N N 4.681 -9.750 -23.958 2.619 -0.933 -0.754 C8 A1AXF 3 A1AXF C9 C4 C 0 1 Y N N N N N 3.883 -13.679 -24.985 -0.805 1.890 0.019 C9 A1AXF 4 A1AXF C1 C5 C 0 1 N N N N N N 7.318 -15.174 -25.477 -2.525 -1.467 -0.224 C1 A1AXF 5 A1AXF C2 C6 C 0 1 Y N N N N N 6.213 -14.215 -25.118 -1.464 -0.406 -0.087 C2 A1AXF 6 A1AXF C3 C7 C 0 1 Y N N N N N 6.480 -12.958 -24.594 -0.134 -0.751 0.068 C3 A1AXF 7 A1AXF C4 C8 C 0 1 Y N N N N N 5.417 -12.101 -24.288 0.817 0.256 0.191 C4 A1AXF 8 A1AXF C5 C9 C 0 1 N N N N N N 6.825 -10.511 -23.006 2.991 1.128 0.458 C5 A1AXF 9 A1AXF C6 C10 C 0 1 N N N N N N 7.089 -9.024 -23.085 4.445 0.719 0.708 C6 A1AXF 10 A1AXF F1 F1 F 0 1 N N N N N N 7.830 -14.871 -26.698 -2.132 -2.613 0.476 F1 A1AXF 11 A1AXF F2 F2 F 0 1 N N N N N N 8.354 -15.089 -24.604 -3.731 -0.992 0.301 F2 A1AXF 12 A1AXF N1 N1 N 0 1 N N N N N N 5.626 -10.847 -23.770 2.158 -0.077 0.347 N1 A1AXF 13 A1AXF N2 N2 N 0 1 N N N N N N 5.974 -8.249 -22.476 4.906 -0.137 -0.394 N2 A1AXF 14 A1AXF N3 N3 N 0 1 Y N N N N N 4.139 -12.463 -24.483 0.457 1.530 0.166 N3 A1AXF 15 A1AXF CL1 CL1 CL 0 0 N N N N N N 4.468 -16.129 -25.959 -3.455 1.430 -0.307 CL1 A1AXF 16 A1AXF H73 H1 H 0 1 N N N N N N 4.365 -9.481 -21.860 4.136 -1.914 0.421 H73 A1AXF 17 A1AXF H72 H2 H 0 1 N N N N N N 3.901 -8.076 -22.878 4.426 -1.954 -1.335 H72 A1AXF 18 A1AXF H82 H3 H 0 1 N N N N N N 4.991 -9.149 -24.826 2.552 -0.385 -1.694 H82 A1AXF 19 A1AXF H83 H4 H 0 1 N N N N N N 3.677 -10.163 -24.137 1.995 -1.825 -0.809 H83 A1AXF 20 A1AXF H9 H5 H 0 1 N N N N N N 2.855 -13.974 -25.138 -1.061 2.939 0.003 H9 A1AXF 21 A1AXF H1 H6 H 0 1 N N N N N N 6.903 -16.193 -25.479 -2.659 -1.713 -1.277 H1 A1AXF 22 A1AXF H3 H7 H 0 1 N N N N N N 7.499 -12.644 -24.424 0.162 -1.790 0.094 H3 A1AXF 23 A1AXF H53 H8 H 0 1 N N N N N N 6.680 -10.800 -21.955 2.638 1.740 1.288 H53 A1AXF 24 A1AXF H52 H9 H 0 1 N N N N N N 7.686 -11.056 -23.420 2.928 1.701 -0.468 H52 A1AXF 25 A1AXF H63 H10 H 0 1 N N N N N N 8.021 -8.795 -22.547 5.069 1.611 0.761 H63 A1AXF 26 A1AXF H62 H11 H 0 1 N N N N N N 7.194 -8.733 -24.141 4.512 0.171 1.647 H62 A1AXF 27 A1AXF H23 H12 H 0 1 N N N N N N 6.121 -8.197 -21.488 4.923 0.372 -1.265 H23 A1AXF 28 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1AXF F1 C1 SING N N 1 A1AXF C1 F2 SING N N 2 A1AXF C1 C2 SING N N 3 A1AXF C2 C3 DOUB Y N 4 A1AXF C2 C10 SING Y N 5 A1AXF C3 C4 SING Y N 6 A1AXF C4 N1 SING N N 7 A1AXF C4 N3 DOUB Y N 8 A1AXF N1 C5 SING N N 9 A1AXF N1 C8 SING N N 10 A1AXF C5 C6 SING N N 11 A1AXF C6 N2 SING N N 12 A1AXF N2 C7 SING N N 13 A1AXF C7 C8 SING N N 14 A1AXF N3 C9 SING Y N 15 A1AXF C9 C10 DOUB Y N 16 A1AXF C10 CL1 SING N N 17 A1AXF C7 H73 SING N N 18 A1AXF C7 H72 SING N N 19 A1AXF C8 H82 SING N N 20 A1AXF C8 H83 SING N N 21 A1AXF C9 H9 SING N N 22 A1AXF C1 H1 SING N N 23 A1AXF C3 H3 SING N N 24 A1AXF C5 H53 SING N N 25 A1AXF C5 H52 SING N N 26 A1AXF C6 H63 SING N N 27 A1AXF C6 H62 SING N N 28 A1AXF N2 H23 SING N N 29 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1AXF SMILES ACDLabs 12.01 "FC(F)c1cc(ncc1Cl)N1CCNCC1" A1AXF InChI InChI 1.06 "InChI=1S/C10H12ClF2N3/c11-8-6-15-9(5-7(8)10(12)13)16-3-1-14-2-4-16/h5-6,10,14H,1-4H2" A1AXF InChIKey InChI 1.06 YUJNUNUYEORSDZ-UHFFFAOYSA-N A1AXF SMILES_CANONICAL CACTVS 3.385 "FC(F)c1cc(ncc1Cl)N2CCNCC2" A1AXF SMILES CACTVS 3.385 "FC(F)c1cc(ncc1Cl)N2CCNCC2" A1AXF SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1c(c(cnc1N2CCNCC2)Cl)C(F)F" A1AXF SMILES "OpenEye OEToolkits" 2.0.7 "c1c(c(cnc1N2CCNCC2)Cl)C(F)F" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1AXF "SYSTEMATIC NAME" ACDLabs 12.01 "1-[5-chloro-4-(difluoromethyl)pyridin-2-yl]piperazine" A1AXF "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "1-[4-[bis(fluoranyl)methyl]-5-chloranyl-pyridin-2-yl]piperazine" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1AXF "Create component" 2024-07-10 RCSB A1AXF "Initial release" 2025-03-26 RCSB #