data_A1AY1 # _chem_comp.id A1AY1 _chem_comp.name "N-[(1S,2S,4S)-bicyclo[2.2.1]hept-5-en-2-yl]-N'-butyl-N-methylurea" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H22 N2 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-07-11 _chem_comp.pdbx_modified_date 2025-03-21 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 222.327 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1AY1 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7HBO _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1AY1 C1 C1 C 0 1 N N N N N N -0.051 -10.427 -25.031 6.496 -0.545 -0.459 C1 A1AY1 1 A1AY1 C10 C2 C 0 1 N N N N N N 6.968 -15.455 -24.896 -3.342 -0.988 -1.265 C10 A1AY1 2 A1AY1 C11 C3 C 0 1 N N N N N N 7.762 -14.470 -25.244 -2.390 -0.126 -1.559 C11 A1AY1 3 A1AY1 C12 C4 C 0 1 N N R N N N 7.005 -13.578 -26.188 -2.454 1.029 -0.552 C12 A1AY1 4 A1AY1 C13 C5 C 0 1 N N N N N N 6.140 -14.630 -26.893 -4.005 1.080 -0.301 C13 A1AY1 5 A1AY1 C2 C6 C 0 1 N N N N N N 0.195 -11.338 -23.846 5.313 0.410 -0.282 C2 A1AY1 6 A1AY1 C3 C7 C 0 1 N N N N N N 1.595 -11.924 -23.846 4.028 -0.400 -0.095 C3 A1AY1 7 A1AY1 C4 C8 C 0 1 N N N N N N 2.697 -10.877 -23.722 2.845 0.555 0.081 C4 A1AY1 8 A1AY1 C5 C9 C 0 1 N N N N N N 5.188 -11.119 -23.763 0.439 0.414 0.435 C5 A1AY1 9 A1AY1 C6 C10 C 0 1 N N N N N N 7.573 -11.532 -23.986 -0.645 -1.763 0.589 C6 A1AY1 10 A1AY1 C7 C11 C 0 1 N N R N N N 5.877 -12.838 -25.390 -1.972 0.390 0.790 C7 A1AY1 11 A1AY1 C8 C12 C 0 1 N N N N N N 5.061 -14.047 -24.854 -3.090 -0.623 1.135 C8 A1AY1 12 A1AY1 C9 C13 C 0 1 N N R N N N 5.657 -15.256 -25.595 -4.110 -0.465 -0.045 C9 A1AY1 13 A1AY1 N1 N1 N 0 1 N N N N N N 3.963 -11.431 -24.197 1.615 -0.220 0.260 N1 A1AY1 14 A1AY1 N2 N2 N 0 1 N N N N N N 6.194 -11.823 -24.363 -0.693 -0.299 0.600 N2 A1AY1 15 A1AY1 O1 O1 O 0 1 N N N N N N 5.405 -10.265 -22.897 0.398 1.629 0.444 O1 A1AY1 16 A1AY1 H2 H1 H 0 1 N N N N N N -1.076 -10.031 -24.983 6.589 -1.175 0.425 H2 A1AY1 17 A1AY1 H3 H2 H 0 1 N N N N N N 0.666 -9.593 -25.007 6.330 -1.171 -1.336 H3 A1AY1 18 A1AY1 H1 H3 H 0 1 N N N N N N 0.079 -10.996 -25.964 7.411 0.032 -0.592 H1 A1AY1 19 A1AY1 H18 H4 H 0 1 N N N N N N 7.215 -16.265 -24.225 -3.549 -1.906 -1.796 H18 A1AY1 20 A1AY1 H19 H5 H 0 1 N N N N N N 8.779 -14.326 -24.911 -1.684 -0.216 -2.372 H19 A1AY1 21 A1AY1 H20 H6 H 0 1 N N N N N N 7.611 -12.937 -26.846 -1.977 1.961 -0.854 H20 A1AY1 22 A1AY1 H22 H7 H 0 1 N N N N N N 5.327 -14.192 -27.492 -4.267 1.668 0.578 H22 A1AY1 23 A1AY1 H21 H8 H 0 1 N N N N N N 6.723 -15.323 -27.517 -4.561 1.393 -1.184 H21 A1AY1 24 A1AY1 H5 H9 H 0 1 N N N N N N 0.054 -10.760 -22.921 5.479 1.036 0.594 H5 A1AY1 25 A1AY1 H4 H10 H 0 1 N N N N N N -0.533 -12.162 -23.877 5.220 1.040 -1.167 H4 A1AY1 26 A1AY1 H7 H11 H 0 1 N N N N N N 1.680 -12.620 -22.999 3.862 -1.026 -0.972 H7 A1AY1 27 A1AY1 H6 H12 H 0 1 N N N N N N 1.742 -12.473 -24.788 4.121 -1.030 0.789 H6 A1AY1 28 A1AY1 H8 H13 H 0 1 N N N N N N 2.434 -9.997 -24.327 3.011 1.181 0.958 H8 A1AY1 29 A1AY1 H9 H14 H 0 1 N N N N N N 2.801 -10.580 -22.668 2.752 1.185 -0.803 H9 A1AY1 30 A1AY1 H11 H15 H 0 1 N N N N N N 8.254 -12.181 -24.556 -0.584 -2.132 1.613 H11 A1AY1 31 A1AY1 H13 H16 H 0 1 N N N N N N 7.799 -10.478 -24.207 -1.545 -2.153 0.115 H13 A1AY1 32 A1AY1 H12 H17 H 0 1 N N N N N N 7.706 -11.717 -22.910 0.232 -2.094 0.031 H12 A1AY1 33 A1AY1 H14 H18 H 0 1 N N N N N N 5.242 -12.348 -26.143 -1.888 1.148 1.568 H14 A1AY1 34 A1AY1 H16 H19 H 0 1 N N N N N N 5.188 -14.153 -23.767 -2.692 -1.638 1.166 H16 A1AY1 35 A1AY1 H15 H20 H 0 1 N N N N N N 3.992 -13.932 -25.089 -3.561 -0.366 2.084 H15 A1AY1 36 A1AY1 H17 H21 H 0 1 N N N N N N 5.005 -16.137 -25.688 -5.104 -0.881 0.116 H17 A1AY1 37 A1AY1 H10 H22 H 0 1 N N N N N N 3.907 -12.116 -24.923 1.647 -1.190 0.253 H10 A1AY1 38 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1AY1 C1 C2 SING N N 1 A1AY1 C2 C3 SING N N 2 A1AY1 C3 C4 SING N N 3 A1AY1 C4 N1 SING N N 4 A1AY1 N1 C5 SING N N 5 A1AY1 C5 O1 DOUB N N 6 A1AY1 C5 N2 SING N N 7 A1AY1 N2 C6 SING N N 8 A1AY1 N2 C7 SING N N 9 A1AY1 C7 C8 SING N N 10 A1AY1 C8 C9 SING N N 11 A1AY1 C9 C10 SING N N 12 A1AY1 C10 C11 DOUB N N 13 A1AY1 C11 C12 SING N N 14 A1AY1 C12 C13 SING N N 15 A1AY1 C7 C12 SING N N 16 A1AY1 C9 C13 SING N N 17 A1AY1 C1 H2 SING N N 18 A1AY1 C1 H3 SING N N 19 A1AY1 C1 H1 SING N N 20 A1AY1 C10 H18 SING N N 21 A1AY1 C11 H19 SING N N 22 A1AY1 C12 H20 SING N N 23 A1AY1 C13 H22 SING N N 24 A1AY1 C13 H21 SING N N 25 A1AY1 C2 H5 SING N N 26 A1AY1 C2 H4 SING N N 27 A1AY1 C3 H7 SING N N 28 A1AY1 C3 H6 SING N N 29 A1AY1 C4 H8 SING N N 30 A1AY1 C4 H9 SING N N 31 A1AY1 C6 H11 SING N N 32 A1AY1 C6 H13 SING N N 33 A1AY1 C6 H12 SING N N 34 A1AY1 C7 H14 SING N N 35 A1AY1 C8 H16 SING N N 36 A1AY1 C8 H15 SING N N 37 A1AY1 C9 H17 SING N N 38 A1AY1 N1 H10 SING N N 39 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1AY1 SMILES ACDLabs 12.01 "CN(C(=O)NCCCC)C1CC2C=CC1C2" A1AY1 InChI InChI 1.06 "InChI=1S/C13H22N2O/c1-3-4-7-14-13(16)15(2)12-9-10-5-6-11(12)8-10/h5-6,10-12H,3-4,7-9H2,1-2H3,(H,14,16)/t10-,11?,12?/m1/s1" A1AY1 InChIKey InChI 1.06 FXSHPYPGPUDCLF-VOMCLLRMSA-N A1AY1 SMILES_CANONICAL CACTVS 3.385 "CCCCNC(=O)N(C)[C@@H]1C[C@H]2C[C@@H]1C=C2" A1AY1 SMILES CACTVS 3.385 "CCCCNC(=O)N(C)[CH]1C[CH]2C[CH]1C=C2" A1AY1 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCCNC(=O)N(C)[C@@H]1C[C@H]2C[C@@H]1C=C2" A1AY1 SMILES "OpenEye OEToolkits" 2.0.7 "CCCCNC(=O)N(C)C1CC2CC1C=C2" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1AY1 "SYSTEMATIC NAME" ACDLabs 12.01 "N-[(1S,2S,4S)-bicyclo[2.2.1]hept-5-en-2-yl]-N'-butyl-N-methylurea" A1AY1 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "1-[(1~{R},2~{R},4~{R})-2-bicyclo[2.2.1]hept-5-enyl]-3-butyl-1-methyl-urea" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1AY1 "Create component" 2024-07-11 RCSB A1AY1 "Initial release" 2025-03-26 RCSB #