data_A1AY8 # _chem_comp.id A1AY8 _chem_comp.name "(3S)-1-[4-(4-methylpiperazin-1-yl)pyridine-2-carbonyl]-N-[(3M)-3-(3-oxo-2,3-dihydro-1H-isoindol-5-yl)phenyl]piperidine-3-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C31 H34 N6 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-07-11 _chem_comp.pdbx_modified_date 2024-10-25 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 538.640 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1AY8 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9CKJ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1AY8 C4 C1 C 0 1 N N N N N N 29.592 57.139 10.604 4.425 3.758 -0.365 C4 A1AY8 1 A1AY8 C5 C2 C 0 1 N N N N N N 30.060 56.823 13.425 7.199 3.598 0.329 C5 A1AY8 2 A1AY8 C6 C3 C 0 1 N N N N N N 29.998 55.633 12.475 6.423 2.400 -0.222 C6 A1AY8 3 A1AY8 C8 C4 C 0 1 Y N N N N N 28.203 55.064 10.806 4.284 1.406 -0.262 C8 A1AY8 4 A1AY8 C10 C5 C 0 1 Y N N N N N 26.572 54.464 9.157 2.474 0.427 -1.488 C10 A1AY8 5 A1AY8 C13 C6 C 0 1 N N N N N N 27.029 51.507 11.283 4.295 -2.337 0.070 C13 A1AY8 6 A1AY8 C15 C7 C 0 1 N N N N N N 28.253 50.451 9.336 3.748 -4.695 0.435 C15 A1AY8 7 A1AY8 C17 C8 C 0 1 N N N N N N 29.396 48.331 10.065 1.347 -5.029 1.040 C17 A1AY8 8 A1AY8 C20 C9 C 0 1 N N N N N N 28.202 46.883 11.691 -0.377 -3.405 0.305 C20 A1AY8 9 A1AY8 C22 C10 C 0 1 Y N N N N N 29.241 45.025 12.957 -2.211 -2.036 -0.347 C22 A1AY8 10 A1AY8 C24 C11 C 0 1 Y N N N N N 28.991 42.680 12.357 -4.241 -0.748 -0.317 C24 A1AY8 11 A1AY8 C26 C12 C 0 1 Y N N N N N 27.868 40.566 11.574 -6.320 0.621 -0.273 C26 A1AY8 12 A1AY8 C28 C13 C 0 1 Y N N N N N 29.274 41.754 10.034 -4.341 1.474 0.811 C28 A1AY8 13 A1AY8 C1 C14 C 0 1 N N N N N N 30.532 59.229 13.638 7.380 6.012 0.249 C1 A1AY8 14 A1AY8 N2 N1 N 0 1 N N N N N N 30.501 58.061 12.713 6.615 4.840 -0.197 N2 A1AY8 15 A1AY8 C3 C15 C 0 1 N N N N N N 29.628 58.331 11.531 5.201 4.957 0.185 C3 A1AY8 16 A1AY8 N7 N2 N 0 1 N N N N N N 29.135 55.954 11.334 5.009 2.517 0.161 N7 A1AY8 17 A1AY8 C9 C16 C 0 1 Y N N N N N 27.426 55.407 9.691 3.167 1.553 -1.082 C9 A1AY8 18 A1AY8 N11 N3 N 0 1 Y N N N N N 26.436 53.217 9.643 2.854 -0.775 -1.111 N11 A1AY8 19 A1AY8 C12 C17 C 0 1 Y N N N N N 27.178 52.894 10.715 3.909 -0.962 -0.326 C12 A1AY8 20 A1AY8 N14 N4 N 0 1 N N N N N N 27.456 50.427 10.573 3.379 -3.326 0.053 N14 A1AY8 21 A1AY8 C16 C18 C 0 1 N N N N N N 29.594 49.758 9.537 2.790 -5.178 1.529 C16 A1AY8 22 A1AY8 C18 C19 C 0 1 N N N N N N 27.166 49.063 11.023 1.991 -3.053 -0.347 C18 A1AY8 23 A1AY8 C19 C20 C 0 1 N N S N N N 28.471 48.304 11.288 1.053 -3.554 0.755 C19 A1AY8 24 A1AY8 N21 N5 N 0 1 N N N N N N 29.123 46.361 12.537 -0.863 -2.186 -0.003 N21 A1AY8 25 A1AY8 C23 C21 C 0 1 Y N N N N N 29.033 44.030 12.006 -2.901 -0.895 0.033 C23 A1AY8 26 A1AY8 C25 C22 C 0 1 Y N N N N N 28.727 41.641 11.314 -4.984 0.474 0.081 C25 A1AY8 27 A1AY8 C27 C23 C 0 1 Y N N N N N 27.567 39.652 10.570 -7.012 1.773 0.099 C27 A1AY8 28 A1AY8 C29 C24 C 0 1 Y N N N N N 28.972 40.836 9.038 -5.031 2.612 1.183 C29 A1AY8 29 A1AY8 C30 C25 C 0 1 Y N N N N N 28.111 39.780 9.304 -6.353 2.765 0.831 C30 A1AY8 30 A1AY8 C31 C26 C 0 1 N N N N N N 27.572 38.697 8.416 -7.365 3.858 1.074 C31 A1AY8 31 A1AY8 N32 N6 N 0 1 N N N N N N 26.687 37.988 9.330 -8.608 3.416 0.433 N32 A1AY8 32 A1AY8 C33 C27 C 0 1 N N N N N N 26.642 38.510 10.572 -8.403 2.212 -0.127 C33 A1AY8 33 A1AY8 O34 O1 O 0 1 N N N N N N 25.876 38.168 11.469 -9.242 1.575 -0.733 O34 A1AY8 34 A1AY8 C35 C28 C 0 1 Y N N N N N 29.177 42.347 13.701 -4.881 -1.748 -1.046 C35 A1AY8 35 A1AY8 C36 C29 C 0 1 Y N N N N N 29.396 43.334 14.657 -4.189 -2.884 -1.415 C36 A1AY8 36 A1AY8 C37 C30 C 0 1 Y N N N N N 29.430 44.672 14.291 -2.857 -3.029 -1.074 C37 A1AY8 37 A1AY8 O38 O2 O 0 1 N N N N N N 27.198 46.288 11.316 -1.091 -4.381 0.219 O38 A1AY8 38 A1AY8 O39 O3 O 0 1 N N N N N N 26.528 51.403 12.387 5.437 -2.574 0.410 O39 A1AY8 39 A1AY8 C40 C31 C 0 1 Y N N N N N 28.062 53.776 11.326 4.661 0.119 0.119 C40 A1AY8 40 A1AY8 H1 H1 H 0 1 N N N N N N 30.601 56.956 10.206 3.381 3.828 -0.058 H1 A1AY8 41 A1AY8 H2 H2 H 0 1 N N N N N N 28.902 57.344 9.773 4.484 3.756 -1.454 H2 A1AY8 42 A1AY8 H3 H3 H 0 1 N N N N N N 29.061 56.992 13.854 7.139 3.601 1.417 H3 A1AY8 43 A1AY8 H4 H4 H 0 1 N N N N N N 30.773 56.600 14.233 8.242 3.528 0.022 H4 A1AY8 44 A1AY8 H5 H5 H 0 1 N N N N N N 29.590 54.761 13.008 6.505 2.382 -1.309 H5 A1AY8 45 A1AY8 H6 H6 H 0 1 N N N N N N 31.011 55.401 12.113 6.836 1.479 0.189 H6 A1AY8 46 A1AY8 H7 H7 H 0 1 N N N N N N 25.978 54.743 8.299 1.610 0.536 -2.128 H7 A1AY8 47 A1AY8 H8 H8 H 0 1 N N N N N N 28.429 51.496 9.042 3.671 -5.350 -0.433 H8 A1AY8 48 A1AY8 H9 H9 H 0 1 N N N N N N 27.697 49.934 8.540 4.770 -4.706 0.814 H9 A1AY8 49 A1AY8 H10 H10 H 0 1 N N N N N N 28.953 47.714 9.269 1.212 -5.609 0.127 H10 A1AY8 50 A1AY8 H11 H11 H 0 1 N N N N N N 30.375 47.916 10.349 0.665 -5.394 1.807 H11 A1AY8 51 A1AY8 H12 H12 H 0 1 N N N N N N 27.438 40.446 12.557 -6.819 -0.152 -0.838 H12 A1AY8 52 A1AY8 H13 H13 H 0 1 N N N N N N 29.945 42.572 9.815 -3.303 1.358 1.085 H13 A1AY8 53 A1AY8 H14 H14 H 0 1 N N N N N N 31.181 59.001 14.496 8.407 5.932 -0.105 H14 A1AY8 54 A1AY8 H15 H15 H 0 1 N N N N N N 30.924 60.108 13.105 6.926 6.917 -0.154 H15 A1AY8 55 A1AY8 H16 H16 H 0 1 N N N N N N 29.513 59.441 13.995 7.373 6.057 1.338 H16 A1AY8 56 A1AY8 H18 H18 H 0 1 N N N N N N 30.021 59.201 10.984 4.787 5.878 -0.226 H18 A1AY8 57 A1AY8 H19 H19 H 0 1 N N N N N N 28.607 58.547 11.879 5.119 4.975 1.272 H19 A1AY8 58 A1AY8 H20 H20 H 0 1 N N N N N N 27.495 56.394 9.257 2.845 2.534 -1.398 H20 A1AY8 59 A1AY8 H21 H21 H 0 1 N N N N N N 30.126 49.716 8.575 2.992 -6.225 1.753 H21 A1AY8 60 A1AY8 H22 H22 H 0 1 N N N N N N 30.191 50.331 10.262 2.933 -4.579 2.428 H22 A1AY8 61 A1AY8 H23 H23 H 0 1 N N N N N N 26.575 49.104 11.950 1.854 -1.981 -0.484 H23 A1AY8 62 A1AY8 H24 H24 H 0 1 N N N N N N 26.592 48.538 10.245 1.771 -3.574 -1.279 H24 A1AY8 63 A1AY8 H25 H25 H 0 1 N N N N N N 28.992 48.806 12.117 1.212 -2.970 1.662 H25 A1AY8 64 A1AY8 H26 H26 H 0 1 N N N N N N 29.797 47.001 12.905 -0.278 -1.412 0.014 H26 A1AY8 65 A1AY8 H27 H27 H 0 1 N N N N N N 28.901 44.310 10.971 -2.401 -0.122 0.598 H27 A1AY8 66 A1AY8 H28 H28 H 0 1 N N N N N N 29.407 40.943 8.055 -4.531 3.385 1.748 H28 A1AY8 67 A1AY8 H29 H29 H 0 1 N N N N N N 27.018 39.115 7.563 -7.522 3.991 2.144 H29 A1AY8 68 A1AY8 H30 H30 H 0 1 N N N N N N 29.150 41.310 14.002 -5.920 -1.637 -1.318 H30 A1AY8 69 A1AY8 H31 H31 H 0 1 N N N N N N 29.540 43.057 15.691 -4.687 -3.658 -1.980 H31 A1AY8 70 A1AY8 H32 H32 H 0 1 N N N N N N 29.602 45.435 15.036 -2.318 -3.915 -1.372 H32 A1AY8 71 A1AY8 H33 H33 H 0 1 N N N N N N 28.632 53.469 12.191 5.524 -0.036 0.750 H33 A1AY8 72 A1AY8 H17 H17 H 0 1 N N N N N N 28.376 38.043 8.046 -7.023 4.791 0.625 H17 A1AY8 73 A1AY8 H34 H34 H 0 1 N N N N N N 26.158 37.183 9.060 -9.443 3.910 0.419 H34 A1AY8 74 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1AY8 C31 C30 SING N N 1 A1AY8 C31 N32 SING N N 2 A1AY8 C29 C30 DOUB Y N 3 A1AY8 C29 C28 SING Y N 4 A1AY8 C10 N11 DOUB Y N 5 A1AY8 C10 C9 SING Y N 6 A1AY8 C30 C27 SING Y N 7 A1AY8 N32 C33 SING N N 8 A1AY8 C15 C16 SING N N 9 A1AY8 C15 N14 SING N N 10 A1AY8 C16 C17 SING N N 11 A1AY8 N11 C12 SING Y N 12 A1AY8 C9 C8 DOUB Y N 13 A1AY8 C28 C25 DOUB Y N 14 A1AY8 C17 C19 SING N N 15 A1AY8 C27 C33 SING N N 16 A1AY8 C27 C26 DOUB Y N 17 A1AY8 C33 O34 DOUB N N 18 A1AY8 N14 C18 SING N N 19 A1AY8 N14 C13 SING N N 20 A1AY8 C4 N7 SING N N 21 A1AY8 C4 C3 SING N N 22 A1AY8 C12 C13 SING N N 23 A1AY8 C12 C40 DOUB Y N 24 A1AY8 C8 C40 SING Y N 25 A1AY8 C8 N7 SING N N 26 A1AY8 C18 C19 SING N N 27 A1AY8 C13 O39 DOUB N N 28 A1AY8 C19 C20 SING N N 29 A1AY8 C25 C26 SING Y N 30 A1AY8 C25 C24 SING N N 31 A1AY8 O38 C20 DOUB N N 32 A1AY8 N7 C6 SING N N 33 A1AY8 C3 N2 SING N N 34 A1AY8 C20 N21 SING N N 35 A1AY8 C23 C24 DOUB Y N 36 A1AY8 C23 C22 SING Y N 37 A1AY8 C24 C35 SING Y N 38 A1AY8 C6 C5 SING N N 39 A1AY8 N21 C22 SING N N 40 A1AY8 N2 C5 SING N N 41 A1AY8 N2 C1 SING N N 42 A1AY8 C22 C37 DOUB Y N 43 A1AY8 C35 C36 DOUB Y N 44 A1AY8 C37 C36 SING Y N 45 A1AY8 C4 H1 SING N N 46 A1AY8 C4 H2 SING N N 47 A1AY8 C5 H3 SING N N 48 A1AY8 C5 H4 SING N N 49 A1AY8 C6 H5 SING N N 50 A1AY8 C6 H6 SING N N 51 A1AY8 C10 H7 SING N N 52 A1AY8 C15 H8 SING N N 53 A1AY8 C15 H9 SING N N 54 A1AY8 C17 H10 SING N N 55 A1AY8 C17 H11 SING N N 56 A1AY8 C26 H12 SING N N 57 A1AY8 C28 H13 SING N N 58 A1AY8 C1 H14 SING N N 59 A1AY8 C1 H15 SING N N 60 A1AY8 C1 H16 SING N N 61 A1AY8 C3 H18 SING N N 62 A1AY8 C3 H19 SING N N 63 A1AY8 C9 H20 SING N N 64 A1AY8 C16 H21 SING N N 65 A1AY8 C16 H22 SING N N 66 A1AY8 C18 H23 SING N N 67 A1AY8 C18 H24 SING N N 68 A1AY8 C19 H25 SING N N 69 A1AY8 N21 H26 SING N N 70 A1AY8 C23 H27 SING N N 71 A1AY8 C29 H28 SING N N 72 A1AY8 C31 H29 SING N N 73 A1AY8 C35 H30 SING N N 74 A1AY8 C36 H31 SING N N 75 A1AY8 C37 H32 SING N N 76 A1AY8 C40 H33 SING N N 77 A1AY8 C31 H17 SING N N 78 A1AY8 N32 H34 SING N N 79 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1AY8 SMILES ACDLabs 12.01 "CN1CCN(CC1)c1cc(ncc1)C(=O)N1CCCC(C1)C(=O)Nc1cc(ccc1)c1ccc2CNC(=O)c2c1" A1AY8 InChI InChI 1.06 "InChI=1S/C31H34N6O3/c1-35-12-14-36(15-13-35)26-9-10-32-28(18-26)31(40)37-11-3-5-24(20-37)29(38)34-25-6-2-4-21(16-25)22-7-8-23-19-33-30(39)27(23)17-22/h2,4,6-10,16-18,24H,3,5,11-15,19-20H2,1H3,(H,33,39)(H,34,38)/t24-/m0/s1" A1AY8 InChIKey InChI 1.06 OYWGFOXQBJYTIR-DEOSSOPVSA-N A1AY8 SMILES_CANONICAL CACTVS 3.385 "CN1CCN(CC1)c2ccnc(c2)C(=O)N3CCC[C@@H](C3)C(=O)Nc4cccc(c4)c5ccc6CNC(=O)c6c5" A1AY8 SMILES CACTVS 3.385 "CN1CCN(CC1)c2ccnc(c2)C(=O)N3CCC[CH](C3)C(=O)Nc4cccc(c4)c5ccc6CNC(=O)c6c5" A1AY8 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN1CCN(CC1)c2ccnc(c2)C(=O)N3CCC[C@@H](C3)C(=O)Nc4cccc(c4)c5ccc6c(c5)C(=O)NC6" A1AY8 SMILES "OpenEye OEToolkits" 2.0.7 "CN1CCN(CC1)c2ccnc(c2)C(=O)N3CCCC(C3)C(=O)Nc4cccc(c4)c5ccc6c(c5)C(=O)NC6" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1AY8 "SYSTEMATIC NAME" ACDLabs 12.01 "(3S)-1-[4-(4-methylpiperazin-1-yl)pyridine-2-carbonyl]-N-[(3M)-3-(3-oxo-2,3-dihydro-1H-isoindol-5-yl)phenyl]piperidine-3-carboxamide" A1AY8 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(3~{S})-1-[4-(4-methylpiperazin-1-yl)pyridin-2-yl]carbonyl-~{N}-[3-(3-oxidanylidene-1,2-dihydroisoindol-5-yl)phenyl]piperidine-3-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1AY8 "Create component" 2024-07-11 RCSB A1AY8 "Initial release" 2024-10-30 RCSB #