data_A1AZ4 # _chem_comp.id A1AZ4 _chem_comp.name Atirmociclib _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C22 H27 Cl F N5 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-07-26 _chem_comp.pdbx_modified_date 2025-03-21 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 463.933 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1AZ4 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9CSK _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1AZ4 C12 C1 C 0 1 Y N N N N N 8.123 0.663 36.253 -1.280 -0.051 -0.159 C12 A1AZ4 1 A1AZ4 C10 C2 C 0 1 Y N N N N N 9.303 1.644 34.364 -1.381 2.244 0.597 C10 A1AZ4 2 A1AZ4 C28 C3 C 0 1 Y N N N N N 7.943 5.441 35.644 2.772 2.532 -0.600 C28 A1AZ4 3 A1AZ4 C11 C4 C 0 1 Y N N N N N 8.559 1.787 35.537 -0.642 1.149 0.138 C11 A1AZ4 4 A1AZ4 C7 C5 C 0 1 Y N N N N N 9.209 -0.757 34.567 -3.393 0.951 0.457 C7 A1AZ4 5 A1AZ4 C13 C6 C 0 1 Y N N N N N 8.466 -0.591 35.732 -2.654 -0.153 -0.003 C13 A1AZ4 6 A1AZ4 C8 C7 C 0 1 Y N N N N N 9.634 0.379 33.873 -2.734 2.150 0.758 C8 A1AZ4 7 A1AZ4 C29 C8 C 0 1 Y N N N N N 8.142 4.197 35.103 1.397 2.470 -0.456 C29 A1AZ4 8 A1AZ4 C14 C9 C 0 1 Y N N N N N 8.302 3.144 35.978 0.825 1.266 -0.031 C14 A1AZ4 9 A1AZ4 C5 C10 C 0 1 Y N N N N N 8.816 -2.744 35.241 -4.795 -0.676 0.120 C5 A1AZ4 10 A1AZ4 C16 C11 C 0 1 Y N N N N N 8.068 4.567 37.761 2.932 0.333 0.073 C16 A1AZ4 11 A1AZ4 C20 C12 C 0 1 N N N N N N 6.913 2.835 39.718 5.549 -0.951 -1.287 C20 A1AZ4 12 A1AZ4 C21 C13 C 0 1 N N N N N N 6.600 1.896 40.870 7.073 -0.931 -1.435 C21 A1AZ4 13 A1AZ4 C23 C14 C 0 1 N N N N N N 7.592 3.313 42.443 7.378 -1.667 0.827 C23 A1AZ4 14 A1AZ4 C18 C15 C 0 1 N N R N N N 8.118 3.732 40.005 5.183 -0.675 0.175 C18 A1AZ4 15 A1AZ4 C24 C16 C 0 1 N N S N N N 7.939 4.354 41.393 5.867 -1.716 1.066 C24 A1AZ4 16 A1AZ4 C1 C17 C 0 1 N N N N N N 6.052 -1.902 37.111 -2.635 -2.439 -2.075 C1 A1AZ4 17 A1AZ4 C3 C18 C 0 1 N N N N N N 8.049 -1.534 38.502 -2.312 -3.207 0.280 C3 A1AZ4 18 A1AZ4 C32 C19 C 0 1 N N N N N N 9.364 -4.878 34.173 -7.244 -0.560 0.494 C32 A1AZ4 19 A1AZ4 C33 C20 C 0 1 N N N N N N 9.482 -4.648 36.621 -6.321 -1.908 -1.397 C33 A1AZ4 20 A1AZ4 C2 C21 C 0 1 N N N N N N 7.499 -2.270 37.309 -3.276 -2.519 -0.688 C2 A1AZ4 21 A1AZ4 C31 C22 C 0 1 N N N N N N 8.759 -4.208 35.377 -6.085 -1.452 0.044 C31 A1AZ4 22 A1AZ4 N27 N1 N 0 1 Y N N N N N 7.916 5.645 36.970 3.500 1.459 -0.333 N27 A1AZ4 23 A1AZ4 N6 N2 N 0 1 Y N N N N N 9.415 -2.084 34.279 -4.692 0.562 0.509 N6 A1AZ4 24 A1AZ4 N15 N3 N 0 1 Y N N N N N 8.266 3.307 37.316 1.620 0.228 0.219 N15 A1AZ4 25 A1AZ4 N4 N4 N 0 1 Y N N N N N 8.237 -1.883 36.134 -3.570 -1.166 -0.207 N4 A1AZ4 26 A1AZ4 N17 N5 N 0 1 N N N N N N 8.004 4.861 39.122 3.730 -0.766 0.341 N17 A1AZ4 27 A1AZ4 O22 O1 O 0 1 N N N N N N 6.403 2.637 42.066 7.648 -1.900 -0.557 O22 A1AZ4 28 A1AZ4 O26 O2 O 0 1 N N N N N N 9.135 5.012 41.765 5.591 -1.425 2.438 O26 A1AZ4 29 A1AZ4 O34 O3 O 0 1 N N N N N N 7.410 -4.612 35.470 -6.004 -2.595 0.898 O34 A1AZ4 30 A1AZ4 F9 F1 F 0 1 N N N N N N 10.348 0.252 32.751 -3.437 3.214 1.202 F9 A1AZ4 31 A1AZ4 CL30 CL1 CL 0 0 N N N N N N 8.183 4.022 33.404 0.405 3.854 -0.795 CL30 A1AZ4 32 A1AZ4 H1 H1 H 0 1 N N N N N N 7.550 0.760 37.163 -0.709 -0.897 -0.512 H1 A1AZ4 33 A1AZ4 H2 H2 H 0 1 N N N N N N 9.627 2.524 33.829 -0.878 3.172 0.826 H2 A1AZ4 34 A1AZ4 H3 H3 H 0 1 N N N N N N 7.804 6.283 34.982 3.246 3.445 -0.930 H3 A1AZ4 35 A1AZ4 H4 H4 H 0 1 N N N N N N 6.035 3.472 39.533 5.111 -0.182 -1.923 H4 A1AZ4 36 A1AZ4 H5 H5 H 0 1 N N N N N N 7.126 2.235 38.821 5.167 -1.929 -1.580 H5 A1AZ4 37 A1AZ4 H6 H6 H 0 1 N N N N N N 5.686 1.329 40.639 7.341 -1.169 -2.465 H6 A1AZ4 38 A1AZ4 H7 H7 H 0 1 N N N N N N 7.439 1.198 41.009 7.450 0.059 -1.181 H7 A1AZ4 39 A1AZ4 H8 H8 H 0 1 N N N N N N 8.415 2.588 42.526 7.760 -0.686 1.111 H8 A1AZ4 40 A1AZ4 H9 H9 H 0 1 N N N N N N 7.440 3.808 43.413 7.867 -2.434 1.427 H9 A1AZ4 41 A1AZ4 H10 H10 H 0 1 N N N N N N 9.071 3.191 39.912 5.521 0.323 0.453 H10 A1AZ4 42 A1AZ4 H11 H11 H 0 1 N N N N N N 7.115 5.081 41.340 5.491 -2.709 0.821 H11 A1AZ4 43 A1AZ4 H12 H12 H 0 1 N N N N N N 5.474 -2.192 38.001 -2.416 -3.445 -2.433 H12 A1AZ4 44 A1AZ4 H13 H13 H 0 1 N N N N N N 5.968 -0.816 36.957 -3.322 -1.949 -2.765 H13 A1AZ4 45 A1AZ4 H14 H14 H 0 1 N N N N N N 5.657 -2.429 36.230 -1.710 -1.866 -2.015 H14 A1AZ4 46 A1AZ4 H15 H15 H 0 1 N N N N N N 7.489 -1.825 39.403 -1.387 -2.633 0.340 H15 A1AZ4 47 A1AZ4 H16 H16 H 0 1 N N N N N N 9.111 -1.789 38.632 -2.769 -3.263 1.268 H16 A1AZ4 48 A1AZ4 H17 H17 H 0 1 N N N N N N 7.948 -0.450 38.342 -2.093 -4.213 -0.078 H17 A1AZ4 49 A1AZ4 H18 H18 H 0 1 N N N N N N 9.311 -5.970 34.295 -7.306 0.312 -0.158 H18 A1AZ4 50 A1AZ4 H19 H19 H 0 1 N N N N N N 8.808 -4.583 33.271 -8.177 -1.122 0.439 H19 A1AZ4 51 A1AZ4 H20 H20 H 0 1 N N N N N N 10.415 -4.571 34.072 -7.075 -0.235 1.521 H20 A1AZ4 52 A1AZ4 H21 H21 H 0 1 N N N N N N 9.036 -4.156 37.498 -5.495 -2.543 -1.717 H21 A1AZ4 53 A1AZ4 H22 H22 H 0 1 N N N N N N 9.395 -5.739 36.729 -7.254 -2.469 -1.452 H22 A1AZ4 54 A1AZ4 H23 H23 H 0 1 N N N N N N 10.544 -4.371 36.545 -6.383 -1.036 -2.048 H23 A1AZ4 55 A1AZ4 H24 H24 H 0 1 N N N N N N 7.583 -3.354 37.475 -4.201 -3.092 -0.748 H24 A1AZ4 56 A1AZ4 H25 H25 H 0 1 N N N N N N 8.747 5.495 39.335 3.327 -1.597 0.639 H25 A1AZ4 57 A1AZ4 H26 H26 H 0 1 N N N N N N 9.029 5.400 42.626 5.994 -2.046 3.060 H26 A1AZ4 58 A1AZ4 H27 H27 H 0 1 N N N N N N 7.007 -4.200 36.225 -6.801 -3.142 0.899 H27 A1AZ4 59 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1AZ4 F9 C8 SING N N 1 A1AZ4 CL30 C29 SING N N 2 A1AZ4 C8 C10 DOUB Y N 3 A1AZ4 C8 C7 SING Y N 4 A1AZ4 C32 C31 SING N N 5 A1AZ4 N6 C7 SING Y N 6 A1AZ4 N6 C5 DOUB Y N 7 A1AZ4 C10 C11 SING Y N 8 A1AZ4 C7 C13 DOUB Y N 9 A1AZ4 C29 C28 DOUB Y N 10 A1AZ4 C29 C14 SING Y N 11 A1AZ4 C5 C31 SING N N 12 A1AZ4 C5 N4 SING Y N 13 A1AZ4 C31 O34 SING N N 14 A1AZ4 C31 C33 SING N N 15 A1AZ4 C11 C14 SING N N 16 A1AZ4 C11 C12 DOUB Y N 17 A1AZ4 C28 N27 SING Y N 18 A1AZ4 C13 N4 SING Y N 19 A1AZ4 C13 C12 SING Y N 20 A1AZ4 C14 N15 DOUB Y N 21 A1AZ4 N4 C2 SING N N 22 A1AZ4 N27 C16 DOUB Y N 23 A1AZ4 C1 C2 SING N N 24 A1AZ4 C2 C3 SING N N 25 A1AZ4 N15 C16 SING Y N 26 A1AZ4 C16 N17 SING N N 27 A1AZ4 N17 C18 SING N N 28 A1AZ4 C20 C18 SING N N 29 A1AZ4 C20 C21 SING N N 30 A1AZ4 C18 C24 SING N N 31 A1AZ4 C21 O22 SING N N 32 A1AZ4 C24 O26 SING N N 33 A1AZ4 C24 C23 SING N N 34 A1AZ4 O22 C23 SING N N 35 A1AZ4 C12 H1 SING N N 36 A1AZ4 C10 H2 SING N N 37 A1AZ4 C28 H3 SING N N 38 A1AZ4 C20 H4 SING N N 39 A1AZ4 C20 H5 SING N N 40 A1AZ4 C21 H6 SING N N 41 A1AZ4 C21 H7 SING N N 42 A1AZ4 C23 H8 SING N N 43 A1AZ4 C23 H9 SING N N 44 A1AZ4 C18 H10 SING N N 45 A1AZ4 C24 H11 SING N N 46 A1AZ4 C1 H12 SING N N 47 A1AZ4 C1 H13 SING N N 48 A1AZ4 C1 H14 SING N N 49 A1AZ4 C3 H15 SING N N 50 A1AZ4 C3 H16 SING N N 51 A1AZ4 C3 H17 SING N N 52 A1AZ4 C32 H18 SING N N 53 A1AZ4 C32 H19 SING N N 54 A1AZ4 C32 H20 SING N N 55 A1AZ4 C33 H21 SING N N 56 A1AZ4 C33 H22 SING N N 57 A1AZ4 C33 H23 SING N N 58 A1AZ4 C2 H24 SING N N 59 A1AZ4 N17 H25 SING N N 60 A1AZ4 O26 H26 SING N N 61 A1AZ4 O34 H27 SING N N 62 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1AZ4 SMILES ACDLabs 12.01 "OC1COCCC1Nc1nc(c2cc(F)c3nc(n(C(C)C)c3c2)C(C)(C)O)c(Cl)cn1" A1AZ4 InChI InChI 1.06 "InChI=1S/C22H27ClFN5O3/c1-11(2)29-16-8-12(7-14(24)19(16)27-20(29)22(3,4)31)18-13(23)9-25-21(28-18)26-15-5-6-32-10-17(15)30/h7-9,11,15,17,30-31H,5-6,10H2,1-4H3,(H,25,26,28)/t15-,17-/m1/s1" A1AZ4 InChIKey InChI 1.06 QYJLBHRAPDJOSO-NVXWUHKLSA-N A1AZ4 SMILES_CANONICAL CACTVS 3.385 "CC(C)n1c2cc(cc(F)c2nc1C(C)(C)O)c3nc(N[C@@H]4CCOC[C@H]4O)ncc3Cl" A1AZ4 SMILES CACTVS 3.385 "CC(C)n1c2cc(cc(F)c2nc1C(C)(C)O)c3nc(N[CH]4CCOC[CH]4O)ncc3Cl" A1AZ4 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)n1c2cc(cc(c2nc1C(C)(C)O)F)c3c(cnc(n3)N[C@@H]4CCOC[C@H]4O)Cl" A1AZ4 SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)n1c2cc(cc(c2nc1C(C)(C)O)F)c3c(cnc(n3)NC4CCOCC4O)Cl" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1AZ4 "SYSTEMATIC NAME" ACDLabs 12.01 "1,5-anhydro-3-({(4M)-5-chloro-4-[4-fluoro-2-(2-hydroxypropan-2-yl)-1-(propan-2-yl)-1H-1,3-benzimidazol-6-yl]pyrimidin-2-yl}amino)-2,3-dideoxy-D-threo-pentitol" A1AZ4 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(3~{S},4~{R})-4-[[5-chloranyl-4-[7-fluoranyl-2-(2-oxidanylpropan-2-yl)-3-propan-2-yl-benzimidazol-5-yl]pyrimidin-2-yl]amino]oxan-3-ol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1AZ4 "Create component" 2024-07-26 RCSB A1AZ4 "Initial release" 2025-03-26 RCSB #