data_A1AZL # _chem_comp.id A1AZL _chem_comp.name "4-[1-(2-aminoethyl)-4,5-dihydro-1H-imidazol-2-yl]-N-[4-(4,5-dihydro-1H-imidazol-2-yl)phenyl]benzamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H24 N6 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-07-19 _chem_comp.pdbx_modified_date 2024-08-02 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 376.455 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1AZL _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9CPI _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1AZL C1 C1 C 0 1 Y N N N N N -5.663 1.641 22.038 5.312 0.095 0.137 C1 A1AZL 1 A1AZL N1 N1 N 0 1 N N N N N N -5.182 3.862 23.042 7.365 -0.215 -1.139 N1 A1AZL 2 A1AZL O1 O1 O 0 1 N N N N N N -2.903 -1.775 19.534 0.808 -0.845 -1.166 O1 A1AZL 3 A1AZL C2 C2 C 0 1 Y N N N N N -5.508 0.262 22.279 4.502 0.096 -1.000 C2 A1AZL 4 A1AZL N2 N2 N 0 1 N N N N N N -5.735 2.181 24.458 7.626 -0.079 1.079 N2 A1AZL 5 A1AZL C3 C3 C 0 1 Y N N N N N -5.267 -0.625 21.223 3.139 0.249 -0.872 C3 A1AZL 6 A1AZL N3 N3 N 0 1 N N N N N N -4.946 -1.038 18.830 1.189 0.556 0.514 N3 A1AZL 7 A1AZL C4 C4 C 0 1 Y N N N N N -5.221 -0.158 19.912 2.570 0.402 0.388 C4 A1AZL 8 A1AZL N4 N4 N 0 1 N N N N N N -3.509 -5.348 13.069 -5.775 2.121 0.008 N4 A1AZL 9 A1AZL C5 C5 C 0 1 Y N N N N N -5.408 1.210 19.642 3.375 0.401 1.522 C5 A1AZL 10 A1AZL N5 N5 N 0 1 N N N N N N -2.646 -3.347 12.474 -6.221 -0.059 -0.221 N5 A1AZL 11 A1AZL C6 C6 C 0 1 Y N N N N N -5.615 2.106 20.701 4.738 0.243 1.400 C6 A1AZL 12 A1AZL N6 N6 N 0 1 N N N N N N 0.788 -1.687 12.743 -5.677 -3.600 0.832 N6 A1AZL 13 A1AZL C7 C7 C 0 1 N N N N N N -3.767 -1.757 18.666 0.360 -0.069 -0.345 C7 A1AZL 14 A1AZL C8 C8 C 0 1 Y N N N N N -3.115 -3.698 14.855 -3.824 0.672 -0.181 C8 A1AZL 15 A1AZL C9 C9 C 0 1 Y N N N N N -4.340 -3.067 15.114 -3.310 -0.218 -1.124 C9 A1AZL 16 A1AZL C10 C10 C 0 1 Y N N N N N -4.579 -2.446 16.343 -1.954 -0.459 -1.178 C10 A1AZL 17 A1AZL C11 C11 C 0 1 Y N N N N N -3.597 -2.499 17.359 -1.095 0.189 -0.288 C11 A1AZL 18 A1AZL C12 C12 C 0 1 Y N N N N N -2.406 -3.205 17.119 -1.610 1.080 0.655 C12 A1AZL 19 A1AZL C13 C13 C 0 1 Y N N N N N -2.158 -3.805 15.879 -2.966 1.319 0.708 C13 A1AZL 20 A1AZL C14 C14 C 0 1 N N N N N N -5.784 2.621 23.145 6.776 -0.069 0.003 C14 A1AZL 21 A1AZL C15 C15 C 0 1 N N N N N N -4.698 4.304 24.350 8.815 -0.353 -0.946 C15 A1AZL 22 A1AZL C16 C16 C 0 1 N N N N N N -5.051 3.139 25.312 9.000 -0.260 0.581 C16 A1AZL 23 A1AZL C17 C17 C 0 1 N N N N N N -2.810 -4.247 13.513 -5.281 0.935 -0.128 C17 A1AZL 24 A1AZL C18 C18 C 0 1 N N N N N N -3.783 -5.239 11.623 -7.243 2.058 0.025 C18 A1AZL 25 A1AZL C19 C19 C 0 1 N N N N N N -2.996 -3.977 11.203 -7.555 0.557 -0.132 C19 A1AZL 26 A1AZL C20 C20 C 0 1 N N N N N N -1.673 -2.247 12.491 -5.944 -1.489 -0.380 C20 A1AZL 27 A1AZL C21 C21 C 0 1 N N N N N N -0.232 -2.781 12.655 -5.954 -2.166 0.992 C21 A1AZL 28 A1AZL H2 H3 H 0 1 N N N N N N -5.576 -0.115 23.289 4.943 -0.022 -1.979 H2 A1AZL 29 A1AZL H24 H4 H 0 1 N N N N N N -6.121 1.315 24.777 7.367 0.017 2.008 H24 A1AZL 30 A1AZL H4 H6 H 0 1 N N N N N N -5.116 -1.675 21.426 2.511 0.250 -1.751 H4 A1AZL 31 A1AZL H26 H7 H 0 1 N N N N N N -5.655 -1.149 18.133 0.826 1.113 1.220 H26 A1AZL 32 A1AZL H3 H10 H 0 1 N N N N N N -5.392 1.569 18.623 2.931 0.520 2.499 H3 A1AZL 33 A1AZL H1 H12 H 0 1 N N N N N N -5.739 3.159 20.495 5.363 0.242 2.281 H1 A1AZL 34 A1AZL H21 H13 H 0 1 N N N N N N 1.698 -2.087 12.848 -4.805 -3.748 0.347 H21 A1AZL 35 A1AZL H22 H14 H 0 1 N N N N N N 0.760 -1.137 11.908 -5.678 -4.070 1.724 H22 A1AZL 36 A1AZL H8 H16 H 0 1 N N N N N N -5.108 -3.061 14.355 -3.975 -0.719 -1.812 H8 A1AZL 37 A1AZL H6 H17 H 0 1 N N N N N N -5.510 -1.927 16.516 -1.557 -1.148 -1.908 H6 A1AZL 38 A1AZL H5 H18 H 0 1 N N N N N N -1.669 -3.286 17.905 -0.946 1.581 1.344 H5 A1AZL 39 A1AZL H7 H19 H 0 1 N N N N N N -1.239 -4.346 15.710 -3.364 2.009 1.438 H7 A1AZL 40 A1AZL H12 H21 H 0 1 N N N N N N -3.611 4.472 24.326 9.159 -1.319 -1.315 H12 A1AZL 41 A1AZL H11 H22 H 0 1 N N N N N N -5.205 5.230 24.659 9.346 0.458 -1.445 H11 A1AZL 42 A1AZL H10 H23 H 0 1 N N N N N N -4.141 2.698 25.745 9.620 0.599 0.842 H10 A1AZL 43 A1AZL H9 H24 H 0 1 N N N N N N -5.711 3.485 26.121 9.433 -1.180 0.973 H9 A1AZL 44 A1AZL H14 H26 H 0 1 N N N N N N -4.859 -5.112 11.435 -7.630 2.431 0.974 H14 A1AZL 45 A1AZL H13 H27 H 0 1 N N N N N N -3.419 -6.127 11.085 -7.659 2.626 -0.806 H13 A1AZL 46 A1AZL H15 H28 H 0 1 N N N N N N -2.092 -4.249 10.638 -8.124 0.376 -1.045 H15 A1AZL 47 A1AZL H16 H29 H 0 1 N N N N N N -3.622 -3.309 10.594 -8.094 0.183 0.738 H16 A1AZL 48 A1AZL H17 H30 H 0 1 N N N N N N -1.744 -1.690 11.545 -6.709 -1.938 -1.013 H17 A1AZL 49 A1AZL H18 H31 H 0 1 N N N N N N -1.905 -1.575 13.331 -4.966 -1.620 -0.843 H18 A1AZL 50 A1AZL H20 H32 H 0 1 N N N N N N -0.183 -3.382 13.575 -6.932 -2.035 1.455 H20 A1AZL 51 A1AZL H19 H33 H 0 1 N N N N N N 0.008 -3.416 11.789 -5.189 -1.717 1.625 H19 A1AZL 52 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1AZL C19 C18 SING N N 1 A1AZL C19 N5 SING N N 2 A1AZL C18 N4 SING N N 3 A1AZL N5 C20 SING N N 4 A1AZL N5 C17 SING N N 5 A1AZL C20 C21 SING N N 6 A1AZL C21 N6 SING N N 7 A1AZL N4 C17 DOUB N N 8 A1AZL C17 C8 SING N N 9 A1AZL C8 C9 DOUB Y N 10 A1AZL C8 C13 SING Y N 11 A1AZL C9 C10 SING Y N 12 A1AZL C13 C12 DOUB Y N 13 A1AZL C10 C11 DOUB Y N 14 A1AZL C12 C11 SING Y N 15 A1AZL C11 C7 SING N N 16 A1AZL C7 N3 SING N N 17 A1AZL C7 O1 DOUB N N 18 A1AZL N3 C4 SING N N 19 A1AZL C5 C4 DOUB Y N 20 A1AZL C5 C6 SING Y N 21 A1AZL C4 C3 SING Y N 22 A1AZL C6 C1 DOUB Y N 23 A1AZL C3 C2 DOUB Y N 24 A1AZL C1 C2 SING Y N 25 A1AZL C1 C14 SING N N 26 A1AZL N1 C14 DOUB N N 27 A1AZL N1 C15 SING N N 28 A1AZL C14 N2 SING N N 29 A1AZL C15 C16 SING N N 30 A1AZL N2 C16 SING N N 31 A1AZL C2 H2 SING N N 32 A1AZL N2 H24 SING N N 33 A1AZL C3 H4 SING N N 34 A1AZL N3 H26 SING N N 35 A1AZL C5 H3 SING N N 36 A1AZL C6 H1 SING N N 37 A1AZL N6 H21 SING N N 38 A1AZL N6 H22 SING N N 39 A1AZL C9 H8 SING N N 40 A1AZL C10 H6 SING N N 41 A1AZL C12 H5 SING N N 42 A1AZL C13 H7 SING N N 43 A1AZL C15 H12 SING N N 44 A1AZL C15 H11 SING N N 45 A1AZL C16 H10 SING N N 46 A1AZL C16 H9 SING N N 47 A1AZL C18 H14 SING N N 48 A1AZL C18 H13 SING N N 49 A1AZL C19 H15 SING N N 50 A1AZL C19 H16 SING N N 51 A1AZL C20 H17 SING N N 52 A1AZL C20 H18 SING N N 53 A1AZL C21 H20 SING N N 54 A1AZL C21 H19 SING N N 55 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1AZL SMILES ACDLabs 12.01 "NCCN1CCN=C1c1ccc(cc1)C(=O)Nc1ccc(cc1)C1=NCCN1" A1AZL InChI InChI 1.06 "InChI=1S/C21H24N6O/c22-9-13-27-14-12-25-20(27)16-1-3-17(4-2-16)21(28)26-18-7-5-15(6-8-18)19-23-10-11-24-19/h1-8H,9-14,22H2,(H,23,24)(H,26,28)" A1AZL InChIKey InChI 1.06 MIXOGBPRHWAMGZ-UHFFFAOYSA-N A1AZL SMILES_CANONICAL CACTVS 3.385 "NCCN1CCN=C1c2ccc(cc2)C(=O)Nc3ccc(cc3)C4=NCCN4" A1AZL SMILES CACTVS 3.385 "NCCN1CCN=C1c2ccc(cc2)C(=O)Nc3ccc(cc3)C4=NCCN4" A1AZL SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1C2=NCCN2CCN)C(=O)Nc3ccc(cc3)C4=NCCN4" A1AZL SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1C2=NCCN2CCN)C(=O)Nc3ccc(cc3)C4=NCCN4" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1AZL "SYSTEMATIC NAME" ACDLabs 12.01 "4-[1-(2-aminoethyl)-4,5-dihydro-1H-imidazol-2-yl]-N-[4-(4,5-dihydro-1H-imidazol-2-yl)phenyl]benzamide" A1AZL "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "4-[1-(2-azanylethyl)-4,5-dihydroimidazol-2-yl]-~{N}-[4-(4,5-dihydro-1~{H}-imidazol-2-yl)phenyl]benzamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1AZL "Create component" 2024-07-19 RCSB A1AZL "Initial release" 2024-08-07 RCSB #