data_A1B06 # _chem_comp.id A1B06 _chem_comp.name "(4M)-4-[3-(benzyloxy)phenyl]-2-(ethanesulfinyl)-6-(trifluoromethyl)pyrimidine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H17 F3 N2 O2 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-03-19 _chem_comp.pdbx_modified_date 2026-09-25 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 406.421 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1B06 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9NTU _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y _chem_comp.pdbx_comp_type ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1B06 C25 C1 C 0 1 Y N N N N N 120.603 154.303 148.949 -6.428 0.307 1.122 C25 A1B06 1 A1B06 C26 C2 C 0 1 Y N N N N N 121.357 153.386 149.663 -7.491 1.177 0.969 C26 A1B06 2 A1B06 C27 C3 C 0 1 Y N N N N N 122.189 152.504 148.994 -8.035 1.390 -0.284 C27 A1B06 3 A1B06 C28 C4 C 0 1 Y N N N N N 122.269 152.539 147.612 -7.516 0.732 -1.383 C28 A1B06 4 A1B06 C29 C5 C 0 1 Y N N N N N 121.515 153.456 146.897 -6.453 -0.138 -1.230 C29 A1B06 5 A1B06 C24 C6 C 0 1 Y N N N N N 120.683 154.339 147.566 -5.905 -0.345 0.022 C24 A1B06 6 A1B06 C16 C7 C 0 1 Y N N N N N 119.424 161.027 145.699 1.348 -0.726 -0.005 C16 A1B06 7 A1B06 C17 C8 C 0 1 Y N N N N N 120.006 159.879 146.522 0.033 -1.396 0.142 C17 A1B06 8 A1B06 C18 C9 C 0 1 Y N N N N N 120.440 160.118 147.813 -0.030 -2.763 0.407 C18 A1B06 9 A1B06 C23 C10 C 0 1 N N N N N N 119.851 155.353 146.778 -4.746 -1.294 0.189 C23 A1B06 10 A1B06 C19 C11 C 0 1 Y N N N N N 120.968 159.084 148.567 -1.254 -3.384 0.544 C19 A1B06 11 A1B06 C20 C12 C 0 1 Y N N N N N 121.061 157.812 148.028 -2.422 -2.654 0.420 C20 A1B06 12 A1B06 C21 C13 C 0 1 Y N N N N N 120.627 157.572 146.734 -2.369 -1.292 0.156 C21 A1B06 13 A1B06 C30 C14 C 0 1 Y N N N N N 120.097 158.607 145.980 -1.143 -0.660 0.022 C30 A1B06 14 A1B06 C31 C15 C 0 1 Y N N N N N 118.050 161.193 145.610 2.530 -1.470 0.016 C31 A1B06 15 A1B06 C02 C16 C 0 1 N N N N N N 116.074 162.486 144.715 5.035 -1.553 -0.110 C02 A1B06 16 A1B06 C05 C17 C 0 1 Y N N N N N 117.579 162.254 144.850 3.731 -0.798 -0.125 C05 A1B06 17 A1B06 C07 C18 C 0 1 Y N N N N N 119.734 162.858 144.364 2.587 1.192 -0.291 C07 A1B06 18 A1B06 F01 F1 F 0 1 N N N N N N 115.498 162.455 145.952 5.368 -1.936 -1.414 F01 A1B06 19 A1B06 F03 F2 F 0 1 N N N N N N 115.533 161.503 143.937 6.043 -0.733 0.407 F03 A1B06 20 A1B06 F04 F3 F 0 1 N N N N N N 115.849 163.702 144.136 4.904 -2.693 0.691 F04 A1B06 21 A1B06 N06 N1 N 0 1 Y N N N N N 118.434 163.060 144.245 3.720 0.518 -0.275 N06 A1B06 22 A1B06 N15 N2 N 0 1 Y N N N N N 120.232 161.864 145.073 1.421 0.594 -0.165 N15 A1B06 23 A1B06 O22 O1 O 0 1 N N N N N N 120.723 156.281 146.195 -3.519 -0.579 0.034 O22 A1B06 24 A1B06 H1 H1 H 0 1 N N N N N N 119.953 154.990 149.470 -6.003 0.141 2.101 H1 A1B06 25 A1B06 H2 H2 H 0 1 N N N N N N 121.296 153.359 150.741 -7.897 1.691 1.828 H2 A1B06 26 A1B06 H3 H3 H 0 1 N N N N N N 122.776 151.788 149.551 -8.866 2.069 -0.404 H3 A1B06 27 A1B06 H4 H4 H 0 1 N N N N N N 122.919 151.852 147.091 -7.941 0.898 -2.362 H4 A1B06 28 A1B06 H5 H5 H 0 1 N N N N N N 121.576 153.482 145.819 -6.044 -0.648 -2.090 H5 A1B06 29 A1B06 H6 H6 H 0 1 N N N N N N 120.367 161.110 148.233 0.881 -3.336 0.505 H6 A1B06 30 A1B06 H7 H7 H 0 1 N N N N N N 119.156 155.871 147.456 -4.783 -1.741 1.183 H7 A1B06 31 A1B06 H8 H8 H 0 1 N N N N N N 119.280 154.835 145.993 -4.807 -2.079 -0.565 H8 A1B06 32 A1B06 H9 H9 H 0 1 N N N N N N 121.307 159.269 149.575 -1.301 -4.443 0.750 H9 A1B06 33 A1B06 H10 H10 H 0 1 N N N N N N 121.472 157.006 148.617 -3.378 -3.145 0.527 H10 A1B06 34 A1B06 H11 H11 H 0 1 N N N N N N 119.756 158.423 144.972 -1.100 0.400 -0.179 H11 A1B06 35 A1B06 H12 H12 H 0 1 N N N N N N 117.371 160.521 146.114 2.508 -2.543 0.140 H12 A1B06 36 A1B06 S1 S1 S 0 1 N Y N N N N ? ? ? 2.634 2.941 -0.500 S1 A1B06 37 A1B06 O1 O2 O 0 1 N Y N N N N ? ? ? 1.352 3.232 -1.039 O1 A1B06 38 A1B06 C1 C19 C 0 1 N Y N N N N ? ? ? 2.727 3.554 1.204 C1 A1B06 39 A1B06 C2 C20 C 0 1 N Y N N N N ? ? ? 2.776 5.083 1.195 C2 A1B06 40 A1B06 H13 H13 H 0 1 N N N N N N ? ? ? 1.849 3.221 1.758 H13 A1B06 41 A1B06 H14 H14 H 0 1 N N N N N N ? ? ? 3.626 3.165 1.682 H14 A1B06 42 A1B06 H15 H15 H 0 1 N N N N N N ? ? ? 1.876 5.472 0.717 H15 A1B06 43 A1B06 H16 H16 H 0 1 N N N N N N ? ? ? 2.831 5.451 2.219 H16 A1B06 44 A1B06 H17 H17 H 0 1 N N N N N N ? ? ? 3.654 5.415 0.641 H17 A1B06 45 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1B06 F03 C02 SING N N 1 A1B06 F04 C02 SING N N 2 A1B06 N06 C07 DOUB Y N 3 A1B06 N06 C05 SING Y N 4 A1B06 C07 N15 SING Y N 5 A1B06 C02 C05 SING N N 6 A1B06 C02 F01 SING N N 7 A1B06 C05 C31 DOUB Y N 8 A1B06 N15 C16 DOUB Y N 9 A1B06 C31 C16 SING Y N 10 A1B06 C16 C17 SING N N 11 A1B06 C30 C17 DOUB Y N 12 A1B06 C30 C21 SING Y N 13 A1B06 O22 C21 SING N N 14 A1B06 O22 C23 SING N N 15 A1B06 C17 C18 SING Y N 16 A1B06 C21 C20 DOUB Y N 17 A1B06 C23 C24 SING N N 18 A1B06 C29 C24 DOUB Y N 19 A1B06 C29 C28 SING Y N 20 A1B06 C24 C25 SING Y N 21 A1B06 C28 C27 DOUB Y N 22 A1B06 C18 C19 DOUB Y N 23 A1B06 C20 C19 SING Y N 24 A1B06 C25 C26 DOUB Y N 25 A1B06 C27 C26 SING Y N 26 A1B06 C25 H1 SING N N 27 A1B06 C26 H2 SING N N 28 A1B06 C27 H3 SING N N 29 A1B06 C28 H4 SING N N 30 A1B06 C29 H5 SING N N 31 A1B06 C18 H6 SING N N 32 A1B06 C23 H7 SING N N 33 A1B06 C23 H8 SING N N 34 A1B06 C19 H9 SING N N 35 A1B06 C20 H10 SING N N 36 A1B06 C30 H11 SING N N 37 A1B06 C31 H12 SING N N 38 A1B06 C07 S1 SING N N 39 A1B06 S1 O1 DOUB N N 40 A1B06 S1 C1 SING N N 41 A1B06 C1 C2 SING N N 42 A1B06 C1 H13 SING N N 43 A1B06 C1 H14 SING N N 44 A1B06 C2 H15 SING N N 45 A1B06 C2 H16 SING N N 46 A1B06 C2 H17 SING N N 47 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1B06 SMILES ACDLabs 14.52 "O=S(CC)c1nc(cc(n1)C(F)(F)F)c1cccc(OCc2ccccc2)c1" A1B06 InChI InChI 1.06 "InChI=1S/C20H17F3N2O2S/c1-2-28(26)19-24-17(12-18(25-19)20(21,22)23)15-9-6-10-16(11-15)27-13-14-7-4-3-5-8-14/h3-12H,2,13H2,1H3" A1B06 InChIKey InChI 1.06 NTDFYGSSDDMNHI-UHFFFAOYSA-N A1B06 SMILES_CANONICAL CACTVS 3.385 "CC[S](=O)c1nc(cc(n1)C(F)(F)F)c2cccc(OCc3ccccc3)c2" A1B06 SMILES CACTVS 3.385 "CC[S](=O)c1nc(cc(n1)C(F)(F)F)c2cccc(OCc3ccccc3)c2" A1B06 SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "CCS(=O)c1nc(cc(n1)C(F)(F)F)c2cccc(c2)OCc3ccccc3" A1B06 SMILES "OpenEye OEToolkits" 3.1.0.0 "CCS(=O)c1nc(cc(n1)C(F)(F)F)c2cccc(c2)OCc3ccccc3" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1B06 "SYSTEMATIC NAME" ACDLabs 14.52 "(4M)-4-[3-(benzyloxy)phenyl]-2-(ethanesulfinyl)-6-(trifluoromethyl)pyrimidine" A1B06 "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "2-ethylsulfinyl-4-(3-phenylmethoxyphenyl)-6-(trifluoromethyl)pyrimidine" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1B06 "Create component" 2025-03-19 RCSB A1B06 "Modify PCM" 2025-03-19 RCSB A1B06 "Initial release" 2026-09-30 RCSB # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1B06 _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C07 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #