data_A1B0D # _chem_comp.id A1B0D _chem_comp.name "5-{[(3E)-3-({(E)-N-[(2-chloro[1,1'-biphenyl]-4-yl)methyl]-beta-alanyl}imino)propyl]amino}benzo[c][2,6]naphthyridine-8-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C32 H29 Cl N6 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-03-12 _chem_comp.pdbx_modified_date 2026-01-09 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 565.065 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1B0D _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7I86 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1B0D C27 C1 C 0 1 Y N N N N N 9.788 5.693 18.908 -10.772 0.647 1.624 C27 A1B0D 1 A1B0D C28 C2 C 0 1 Y N N N N N 11.105 5.447 19.253 -11.989 0.720 2.271 C28 A1B0D 2 A1B0D C30 C3 C 0 1 Y N N N N N 11.624 4.948 16.984 -12.320 -1.632 1.934 C30 A1B0D 3 A1B0D C31 C4 C 0 1 Y N N N N N 10.303 5.187 16.635 -11.111 -1.714 1.274 C31 A1B0D 4 A1B0D C8 C5 C 0 1 Y N N N N N -5.650 3.698 16.876 7.350 2.114 0.559 C8 A1B0D 5 A1B0D CL CL1 CL 0 0 N N N N N N 8.827 7.811 15.429 -9.856 1.463 -1.056 CL A1B0D 6 A1B0D C24 C6 C 0 1 Y N N N N N 7.624 6.869 16.242 -8.711 0.242 -0.598 C24 A1B0D 7 A1B0D C23 C7 C 0 1 Y N N N N N 7.961 5.920 17.202 -9.019 -0.657 0.423 C23 A1B0D 8 A1B0D C26 C8 C 0 1 Y N N N N N 9.362 5.575 17.590 -10.325 -0.573 1.121 C26 A1B0D 9 A1B0D C29 C9 C 0 1 Y N N N N N 12.023 5.071 18.289 -12.762 -0.417 2.426 C29 A1B0D 10 A1B0D C22 C10 C 0 1 Y N N N N N 6.917 5.320 17.885 -8.094 -1.635 0.785 C22 A1B0D 11 A1B0D C21 C11 C 0 1 Y N N N N N 5.606 5.667 17.633 -6.880 -1.709 0.133 C21 A1B0D 12 A1B0D C25 C12 C 0 1 Y N N N N N 6.310 7.168 15.948 -7.495 0.155 -1.247 C25 A1B0D 13 A1B0D C20 C13 C 0 1 Y N N N N N 5.278 6.585 16.659 -6.579 -0.815 -0.879 C20 A1B0D 14 A1B0D C19 C14 C 0 1 N N N N N N 3.853 7.020 16.397 -5.254 -0.905 -1.590 C19 A1B0D 15 A1B0D N5 N1 N 0 1 N N N N N N 3.156 6.202 15.402 -4.269 -0.061 -0.900 N5 A1B0D 16 A1B0D C18 C15 C 0 1 N N N N N N 1.772 6.611 15.152 -2.962 -0.124 -1.567 C18 A1B0D 17 A1B0D C17 C16 C 0 1 N N N N N N 1.088 5.677 14.166 -1.965 0.765 -0.821 C17 A1B0D 18 A1B0D C16 C17 C 0 1 N N N N N N -0.382 5.972 13.993 -0.624 0.701 -1.506 C16 A1B0D 19 A1B0D O1 O1 O 0 1 N N N N N N -0.858 7.051 14.300 -0.480 0.011 -2.493 O1 A1B0D 20 A1B0D N4 N2 N 0 1 N N N N N N -1.125 5.001 13.488 0.415 1.409 -1.020 N4 A1B0D 21 A1B0D C15 C18 C 0 1 N N N N N N -2.580 5.132 13.451 1.571 1.354 -1.610 C15 A1B0D 22 A1B0D C14 C19 C 0 1 N N N N N N -3.330 3.864 13.135 2.733 2.146 -1.068 C14 A1B0D 23 A1B0D C13 C20 C 0 1 N N N N N N -4.828 4.086 13.261 3.912 1.207 -0.807 C13 A1B0D 24 A1B0D N3 N3 N 0 1 N N N N N N -5.174 4.344 14.642 5.042 1.977 -0.280 N3 A1B0D 25 A1B0D C7 C21 C 0 1 Y N N N N N -5.393 3.367 15.505 6.227 1.339 0.033 C7 A1B0D 26 A1B0D C12 C22 C 0 1 Y N N N N N -5.793 2.631 17.786 8.556 1.441 0.867 C12 A1B0D 27 A1B0D C11 C23 C 0 1 Y N N N N N -5.987 2.971 19.137 9.632 2.173 1.363 C11 A1B0D 28 A1B0D N2 N4 N 0 1 Y N N N N N -6.051 4.203 19.592 9.512 3.474 1.537 N2 A1B0D 29 A1B0D C10 C24 C 0 1 Y N N N N N -5.948 5.193 18.704 8.398 4.130 1.259 C10 A1B0D 30 A1B0D C9 C25 C 0 1 Y N N N N N -5.756 5.009 17.375 7.290 3.494 0.767 C9 A1B0D 31 A1B0D C4 C26 C 0 1 Y N N N N N -5.727 1.317 17.324 8.604 -0.007 0.644 C4 A1B0D 32 A1B0D C3 C27 C 0 1 Y N N N N N -5.833 0.196 18.154 9.756 -0.746 0.923 C3 A1B0D 33 A1B0D C2 C28 C 0 1 Y N N N N N -5.721 -1.063 17.666 9.776 -2.092 0.706 C2 A1B0D 34 A1B0D N1 N5 N 0 1 Y N N N N N -5.351 2.133 15.066 6.334 0.045 -0.145 N1 A1B0D 35 A1B0D C5 C29 C 0 1 Y N N N N N -5.515 1.107 15.960 7.451 -0.651 0.136 C5 A1B0D 36 A1B0D C6 C30 C 0 1 Y N N N N N -5.419 -0.213 15.472 7.488 -2.034 -0.082 C6 A1B0D 37 A1B0D C1 C31 C 0 1 Y N N N N N -5.502 -1.282 16.319 8.644 -2.747 0.203 C1 A1B0D 38 A1B0D C C32 C 0 1 N N N N N N -5.259 -2.662 15.792 8.682 -4.207 -0.027 C A1B0D 39 A1B0D O O2 O 0 1 N N N N N N -5.528 -2.912 14.660 7.703 -4.779 -0.464 O A1B0D 40 A1B0D N N6 N 0 1 N N N N N N -4.715 -3.512 16.581 9.802 -4.903 0.248 N A1B0D 41 A1B0D H1 H1 H 0 1 N N N N N N 9.082 5.980 19.673 -10.170 1.535 1.503 H1 A1B0D 42 A1B0D H2 H2 H 0 1 N N N N N N 11.418 5.549 20.281 -12.338 1.666 2.658 H2 A1B0D 43 A1B0D H3 H3 H 0 1 N N N N N N 12.339 4.665 16.226 -12.928 -2.516 2.058 H3 A1B0D 44 A1B0D H4 H4 H 0 1 N N N N N N 9.997 5.071 15.606 -10.767 -2.663 0.890 H4 A1B0D 45 A1B0D H5 H5 H 0 1 N N N N N N 13.049 4.875 18.564 -13.709 -0.358 2.942 H5 A1B0D 46 A1B0D H6 H6 H 0 1 N N N N N N 7.133 4.567 18.628 -8.327 -2.333 1.576 H6 A1B0D 47 A1B0D H7 H7 H 0 1 N N N N N N 4.818 5.209 18.212 -6.163 -2.466 0.414 H7 A1B0D 48 A1B0D H8 H8 H 0 1 N N N N N N 6.085 7.865 15.154 -7.256 0.847 -2.041 H8 A1B0D 49 A1B0D H9 H9 H 0 1 N N N N N N 3.869 8.060 16.040 -4.911 -1.939 -1.589 H9 A1B0D 50 A1B0D H10 H10 H 0 1 N N N N N N 3.295 6.965 17.343 -5.370 -0.562 -2.618 H10 A1B0D 51 A1B0D H11 H11 H 0 1 N N N N N N 3.150 5.255 15.723 -4.192 -0.318 0.073 H11 A1B0D 52 A1B0D H13 H13 H 0 1 N N N N N N 1.769 7.631 14.740 -2.603 -1.153 -1.566 H13 A1B0D 53 A1B0D H14 H14 H 0 1 N N N N N N 1.217 6.597 16.102 -3.062 0.225 -2.595 H14 A1B0D 54 A1B0D H15 H15 H 0 1 N N N N N N 1.197 4.644 14.528 -2.325 1.794 -0.822 H15 A1B0D 55 A1B0D H16 H16 H 0 1 N N N N N N 1.582 5.777 13.188 -1.866 0.416 0.207 H16 A1B0D 56 A1B0D H17 H17 H 0 1 N N N N N N -3.082 6.070 13.637 1.699 0.740 -2.489 H17 A1B0D 57 A1B0D H18 H18 H 0 1 N N N N N N -3.021 3.076 13.837 3.025 2.905 -1.793 H18 A1B0D 58 A1B0D H19 H19 H 0 1 N N N N N N -3.096 3.552 12.107 2.439 2.629 -0.135 H19 A1B0D 59 A1B0D H20 H20 H 0 1 N N N N N N -5.122 4.948 12.644 3.619 0.449 -0.081 H20 A1B0D 60 A1B0D H21 H21 H 0 1 N N N N N N -5.360 3.188 12.913 4.205 0.724 -1.739 H21 A1B0D 61 A1B0D H22 H22 H 0 1 N N N N N N -4.426 4.889 15.021 4.957 2.935 -0.150 H22 A1B0D 62 A1B0D H23 H23 H 0 1 N N N N N N -6.090 2.165 19.849 10.560 1.677 1.605 H23 A1B0D 63 A1B0D H24 H24 H 0 1 N N N N N N -6.022 6.207 19.068 8.362 5.196 1.423 H24 A1B0D 64 A1B0D H25 H25 H 0 1 N N N N N N -5.685 5.856 16.709 6.390 4.047 0.545 H25 A1B0D 65 A1B0D H26 H26 H 0 1 N N N N N N -6.009 0.338 19.210 10.633 -0.250 1.310 H26 A1B0D 66 A1B0D H27 H27 H 0 1 N N N N N N -5.804 -1.905 18.337 10.670 -2.657 0.924 H27 A1B0D 67 A1B0D H28 H28 H 0 1 N N N N N N -5.278 -0.381 14.415 6.620 -2.544 -0.475 H28 A1B0D 68 A1B0D H29 H29 H 0 1 N N N N N N -4.498 -4.431 16.253 10.584 -4.447 0.597 H29 A1B0D 69 A1B0D H30 H30 H 0 1 N N N N N N -4.507 -3.256 17.525 9.827 -5.861 0.097 H30 A1B0D 70 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1B0D C14 C13 SING N N 1 A1B0D C14 C15 SING N N 2 A1B0D C13 N3 SING N N 3 A1B0D C15 N4 DOUB N N 4 A1B0D N4 C16 SING N N 5 A1B0D C16 C17 SING N N 6 A1B0D C16 O1 DOUB N N 7 A1B0D C17 C18 SING N N 8 A1B0D N3 C7 SING N N 9 A1B0D O C DOUB N N 10 A1B0D N1 C7 DOUB Y N 11 A1B0D N1 C5 SING Y N 12 A1B0D C18 N5 SING N N 13 A1B0D N5 C19 SING N N 14 A1B0D CL C24 SING N N 15 A1B0D C6 C5 DOUB Y N 16 A1B0D C6 C1 SING Y N 17 A1B0D C7 C8 SING Y N 18 A1B0D C C1 SING N N 19 A1B0D C N SING N N 20 A1B0D C25 C24 DOUB Y N 21 A1B0D C25 C20 SING Y N 22 A1B0D C5 C4 SING Y N 23 A1B0D C24 C23 SING Y N 24 A1B0D C1 C2 DOUB Y N 25 A1B0D C19 C20 SING N N 26 A1B0D C31 C30 DOUB Y N 27 A1B0D C31 C26 SING Y N 28 A1B0D C20 C21 DOUB Y N 29 A1B0D C8 C9 DOUB Y N 30 A1B0D C8 C12 SING Y N 31 A1B0D C30 C29 SING Y N 32 A1B0D C23 C26 SING N N 33 A1B0D C23 C22 DOUB Y N 34 A1B0D C4 C12 SING Y N 35 A1B0D C4 C3 DOUB Y N 36 A1B0D C9 C10 SING Y N 37 A1B0D C26 C27 DOUB Y N 38 A1B0D C21 C22 SING Y N 39 A1B0D C2 C3 SING Y N 40 A1B0D C12 C11 DOUB Y N 41 A1B0D C29 C28 DOUB Y N 42 A1B0D C10 N2 DOUB Y N 43 A1B0D C27 C28 SING Y N 44 A1B0D C11 N2 SING Y N 45 A1B0D C27 H1 SING N N 46 A1B0D C28 H2 SING N N 47 A1B0D C30 H3 SING N N 48 A1B0D C31 H4 SING N N 49 A1B0D C29 H5 SING N N 50 A1B0D C22 H6 SING N N 51 A1B0D C21 H7 SING N N 52 A1B0D C25 H8 SING N N 53 A1B0D C19 H9 SING N N 54 A1B0D C19 H10 SING N N 55 A1B0D N5 H11 SING N N 56 A1B0D C18 H13 SING N N 57 A1B0D C18 H14 SING N N 58 A1B0D C17 H15 SING N N 59 A1B0D C17 H16 SING N N 60 A1B0D C15 H17 SING N N 61 A1B0D C14 H18 SING N N 62 A1B0D C14 H19 SING N N 63 A1B0D C13 H20 SING N N 64 A1B0D C13 H21 SING N N 65 A1B0D N3 H22 SING N N 66 A1B0D C11 H23 SING N N 67 A1B0D C10 H24 SING N N 68 A1B0D C9 H25 SING N N 69 A1B0D C3 H26 SING N N 70 A1B0D C2 H27 SING N N 71 A1B0D C6 H28 SING N N 72 A1B0D N H29 SING N N 73 A1B0D N H30 SING N N 74 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1B0D SMILES ACDLabs 14.52 "Clc1cc(ccc1c1ccccc1)CNCCC(=O)/N=C/CCNc1nc2cc(ccc2c2cnccc12)C(N)=O" A1B0D InChI InChI 1.06 "InChI=1S/C32H29ClN6O2/c33-28-17-21(7-9-24(28)22-5-2-1-3-6-22)19-35-16-12-30(40)37-13-4-14-38-32-26-11-15-36-20-27(26)25-10-8-23(31(34)41)18-29(25)39-32/h1-3,5-11,13,15,17-18,20,35H,4,12,14,16,19H2,(H2,34,41)(H,38,39)/b37-13+" A1B0D InChIKey InChI 1.06 YLLAGTCXVHAWOY-WMJGVATBSA-N A1B0D SMILES_CANONICAL CACTVS 3.385 "NC(=O)c1ccc2c(c1)nc(NCCC=NC(=O)CCNCc3ccc(c(Cl)c3)c4ccccc4)c5ccncc25" A1B0D SMILES CACTVS 3.385 "NC(=O)c1ccc2c(c1)nc(NCCC=NC(=O)CCNCc3ccc(c(Cl)c3)c4ccccc4)c5ccncc25" A1B0D SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "c1ccc(cc1)c2ccc(cc2Cl)CNCCC(=O)/N=C/CCNc3c4ccncc4c5ccc(cc5n3)C(=O)N" A1B0D SMILES "OpenEye OEToolkits" 3.1.0.0 "c1ccc(cc1)c2ccc(cc2Cl)CNCCC(=O)N=CCCNc3c4ccncc4c5ccc(cc5n3)C(=O)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1B0D "SYSTEMATIC NAME" ACDLabs 14.52 "5-{[(3E)-3-({(E)-N-[(2-chloro[1,1'-biphenyl]-4-yl)methyl]-beta-alanyl}imino)propyl]amino}benzo[c][2,6]naphthyridine-8-carboxamide" A1B0D "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "5-[[(3~{E})-3-[3-[(3-chloranyl-4-phenyl-phenyl)methylamino]propanoylimino]propyl]amino]benzo[c][2,6]naphthyridine-8-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1B0D "Create component" 2025-03-12 RCSB A1B0D "Initial release" 2026-01-14 RCSB #