data_A1B0E # _chem_comp.id A1B0E _chem_comp.name "5-{[2-(4-{[(3-chlorophenyl)methyl]amino}butoxy)ethyl]amino}benzo[c][2,6]naphthyridine-8-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C26 H28 Cl N5 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-03-12 _chem_comp.pdbx_modified_date 2026-01-09 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 477.986 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1B0E _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7I89 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1B0E C2 C1 C 0 1 Y N N N N N -5.531 -0.662 17.402 8.536 0.165 0.968 C2 A1B0E 1 A1B0E C3 C2 C 0 1 Y N N N N N -5.643 0.612 17.991 7.732 -0.930 0.849 C3 A1B0E 2 A1B0E N4 N1 N 0 1 N N N N N N 3.388 6.531 15.195 -6.090 -0.131 0.060 N4 A1B0E 3 A1B0E C5 C3 C 0 1 Y N N N N N -5.317 1.599 15.764 5.956 0.469 -0.059 C5 A1B0E 4 A1B0E C7 C4 C 0 1 Y N N N N N -5.291 3.938 15.326 3.874 -0.381 -0.702 C7 A1B0E 5 A1B0E C8 C5 C 0 1 Y N N N N N -5.577 4.240 16.741 4.259 -1.740 -0.326 C8 A1B0E 6 A1B0E C9 C6 C 0 1 Y N N N N N -5.747 5.556 17.261 3.405 -2.837 -0.461 C9 A1B0E 7 A1B0E C10 C7 C 0 1 Y N N N N N -5.935 5.730 18.621 3.860 -4.071 -0.080 C10 A1B0E 8 A1B0E C11 C8 C 0 1 Y N N N N N -5.833 3.421 19.040 5.928 -3.252 0.561 C11 A1B0E 9 A1B0E C13 C9 C 0 1 N N N N N N -4.712 4.906 13.033 2.221 1.216 -1.596 C13 A1B0E 10 A1B0E C15 C10 C 0 1 N N N N N N -1.032 5.405 13.254 -1.480 0.783 -1.487 C15 A1B0E 11 A1B0E C16 C11 C 0 1 N N N N N N -0.299 6.427 14.148 -2.346 0.372 -0.295 C16 A1B0E 12 A1B0E C19 C12 C 0 1 N N N N N N 4.131 7.288 16.247 -6.953 -0.523 1.183 C19 A1B0E 13 A1B0E C22 C13 C 0 1 Y N N N N N 7.776 7.381 15.024 -10.236 -1.759 -0.211 C22 A1B0E 14 A1B0E C24 C14 C 0 1 Y N N N N N 7.556 5.752 16.762 -10.489 0.544 0.398 C24 A1B0E 15 A1B0E C25 C15 C 0 1 Y N N N N N 6.201 6.008 16.944 -9.171 0.576 0.819 C25 A1B0E 16 A1B0E CL CL1 CL 0 0 N N N N N N 8.278 4.592 17.760 -11.474 1.968 0.516 CL A1B0E 17 A1B0E C23 C16 C 0 1 Y N N N N N 8.367 6.395 15.826 -11.021 -0.625 -0.117 C23 A1B0E 18 A1B0E C21 C17 C 0 1 Y N N N N N 6.388 7.679 15.177 -8.920 -1.725 0.209 C21 A1B0E 19 A1B0E C20 C18 C 0 1 Y N N N N N 5.602 6.992 16.127 -8.388 -0.558 0.725 C20 A1B0E 20 A1B0E C18 C19 C 0 1 N N N N N N 1.933 6.946 15.144 -4.680 -0.086 0.471 C18 A1B0E 21 A1B0E C17 C20 C 0 1 N N N N N N 1.166 5.976 14.248 -3.814 0.325 -0.722 C17 A1B0E 22 A1B0E O1 O1 O 0 1 N N N N N N -2.425 5.606 13.489 -0.109 0.827 -1.088 O1 A1B0E 23 A1B0E C14 C21 C 0 1 N N N N N N -3.181 4.517 12.988 0.789 1.202 -2.134 C14 A1B0E 24 A1B0E N3 N2 N 0 1 N N N N N N -5.107 5.035 14.431 2.614 -0.144 -1.217 N3 A1B0E 25 A1B0E C12 C22 C 0 1 Y N N N N N -5.651 3.128 17.649 5.555 -1.960 0.201 C12 A1B0E 26 A1B0E N2 N3 N 0 1 Y N N N N N -5.968 4.685 19.525 5.076 -4.245 0.408 N2 A1B0E 27 A1B0E C4 C23 C 0 1 Y N N N N N -5.535 1.758 17.159 6.439 -0.799 0.338 C4 A1B0E 28 A1B0E N1 N4 N 0 1 Y N N N N N -5.190 2.660 14.857 4.713 0.616 -0.553 N1 A1B0E 29 A1B0E C6 C24 C 0 1 Y N N N N N -5.226 0.306 15.172 6.790 1.587 0.080 C6 A1B0E 30 A1B0E C1 C25 C 0 1 Y N N N N N -5.313 -0.796 16.009 8.073 1.431 0.585 C1 A1B0E 31 A1B0E C C26 C 0 1 N N N N N N -5.107 -2.143 15.412 8.953 2.610 0.732 C A1B0E 32 A1B0E O O2 O 0 1 N N N N N N -5.304 -2.406 14.191 8.551 3.711 0.411 O A1B0E 33 A1B0E N N5 N 0 1 N N N N N N -4.584 -3.075 16.252 10.199 2.463 1.222 N A1B0E 34 A1B0E H1 H1 H 0 1 N N N N N N -5.612 -1.545 18.018 9.535 0.056 1.364 H1 A1B0E 35 A1B0E H2 H2 H 0 1 N N N N N N -5.808 0.716 19.053 8.096 -1.901 1.151 H2 A1B0E 36 A1B0E H3 H3 H 0 1 N N N N N N 3.441 5.553 15.398 -6.382 0.753 -0.329 H3 A1B0E 37 A1B0E H5 H5 H 0 1 N N N N N N -5.729 6.410 16.600 2.408 -2.715 -0.859 H5 A1B0E 38 A1B0E H6 H6 H 0 1 N N N N N N -6.063 6.735 18.996 3.207 -4.925 -0.181 H6 A1B0E 39 A1B0E H7 H7 H 0 1 N N N N N N -5.865 2.597 19.738 6.912 -3.439 0.965 H7 A1B0E 40 A1B0E H8 H8 H 0 1 N N N N N N -4.869 5.862 12.512 2.896 1.587 -2.368 H8 A1B0E 41 A1B0E H9 H9 H 0 1 N N N N N N -5.310 4.121 12.548 2.275 1.866 -0.723 H9 A1B0E 42 A1B0E H10 H10 H 0 1 N N N N N N -0.742 4.380 13.528 -1.602 0.056 -2.291 H10 A1B0E 43 A1B0E H11 H11 H 0 1 N N N N N N -0.793 5.583 12.195 -1.789 1.768 -1.838 H11 A1B0E 44 A1B0E H12 H12 H 0 1 N N N N N N -0.355 7.429 13.698 -2.038 -0.613 0.056 H12 A1B0E 45 A1B0E H13 H13 H 0 1 N N N N N N -0.756 6.448 15.148 -2.225 1.098 0.509 H13 A1B0E 46 A1B0E H14 H14 H 0 1 N N N N N N 3.961 8.366 16.113 -6.660 -1.511 1.538 H14 A1B0E 47 A1B0E H15 H15 H 0 1 N N N N N N 3.774 6.981 17.241 -6.847 0.200 1.992 H15 A1B0E 48 A1B0E H16 H16 H 0 1 N N N N N N 8.368 7.913 14.294 -10.653 -2.672 -0.609 H16 A1B0E 49 A1B0E H17 H17 H 0 1 N N N N N N 5.626 5.472 17.685 -8.755 1.488 1.221 H17 A1B0E 50 A1B0E H18 H18 H 0 1 N N N N N N 9.412 6.142 15.723 -12.050 -0.651 -0.446 H18 A1B0E 51 A1B0E H19 H19 H 0 1 N N N N N N 5.934 8.439 14.558 -8.308 -2.612 0.136 H19 A1B0E 52 A1B0E H20 H20 H 0 1 N N N N N N 1.855 7.964 14.736 -4.559 0.640 1.275 H20 A1B0E 53 A1B0E H21 H21 H 0 1 N N N N N N 1.508 6.924 16.158 -4.372 -1.071 0.821 H21 A1B0E 54 A1B0E H22 H22 H 0 1 N N N N N N 1.211 4.965 14.679 -4.122 1.310 -1.073 H22 A1B0E 55 A1B0E H23 H23 H 0 1 N N N N N N 1.617 5.968 13.245 -3.935 -0.401 -1.526 H23 A1B0E 56 A1B0E H24 H24 H 0 1 N N N N N N -3.006 3.627 13.610 0.528 2.196 -2.498 H24 A1B0E 57 A1B0E H25 H25 H 0 1 N N N N N N -2.883 4.304 11.951 0.715 0.484 -2.951 H25 A1B0E 58 A1B0E H26 H26 H 0 1 N N N N N N -4.410 5.613 14.855 1.990 -0.878 -1.328 H26 A1B0E 59 A1B0E H27 H27 H 0 1 N N N N N N -5.094 0.188 14.107 6.440 2.564 -0.218 H27 A1B0E 60 A1B0E H28 H28 H 0 1 N N N N N N -4.349 -3.984 15.907 10.520 1.584 1.479 H28 A1B0E 61 A1B0E H29 H29 H 0 1 N N N N N N -4.434 -2.852 17.215 10.776 3.237 1.319 H29 A1B0E 62 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1B0E C14 C13 SING N N 1 A1B0E C14 O1 SING N N 2 A1B0E C13 N3 SING N N 3 A1B0E C15 O1 SING N N 4 A1B0E C15 C16 SING N N 5 A1B0E C16 C17 SING N N 6 A1B0E O C DOUB N N 7 A1B0E C17 C18 SING N N 8 A1B0E N3 C7 SING N N 9 A1B0E N1 C7 DOUB Y N 10 A1B0E N1 C5 SING Y N 11 A1B0E C22 C21 DOUB Y N 12 A1B0E C22 C23 SING Y N 13 A1B0E C18 N4 SING N N 14 A1B0E C6 C5 DOUB Y N 15 A1B0E C6 C1 SING Y N 16 A1B0E C21 C20 SING Y N 17 A1B0E N4 C19 SING N N 18 A1B0E C7 C8 SING Y N 19 A1B0E C C1 SING N N 20 A1B0E C N SING N N 21 A1B0E C5 C4 SING Y N 22 A1B0E C23 C24 DOUB Y N 23 A1B0E C1 C2 DOUB Y N 24 A1B0E C20 C19 SING N N 25 A1B0E C20 C25 DOUB Y N 26 A1B0E C8 C9 DOUB Y N 27 A1B0E C8 C12 SING Y N 28 A1B0E C24 C25 SING Y N 29 A1B0E C24 CL SING N N 30 A1B0E C4 C12 SING Y N 31 A1B0E C4 C3 DOUB Y N 32 A1B0E C9 C10 SING Y N 33 A1B0E C2 C3 SING Y N 34 A1B0E C12 C11 DOUB Y N 35 A1B0E C10 N2 DOUB Y N 36 A1B0E C11 N2 SING Y N 37 A1B0E C2 H1 SING N N 38 A1B0E C3 H2 SING N N 39 A1B0E N4 H3 SING N N 40 A1B0E C9 H5 SING N N 41 A1B0E C10 H6 SING N N 42 A1B0E C11 H7 SING N N 43 A1B0E C13 H8 SING N N 44 A1B0E C13 H9 SING N N 45 A1B0E C15 H10 SING N N 46 A1B0E C15 H11 SING N N 47 A1B0E C16 H12 SING N N 48 A1B0E C16 H13 SING N N 49 A1B0E C19 H14 SING N N 50 A1B0E C19 H15 SING N N 51 A1B0E C22 H16 SING N N 52 A1B0E C25 H17 SING N N 53 A1B0E C23 H18 SING N N 54 A1B0E C21 H19 SING N N 55 A1B0E C18 H20 SING N N 56 A1B0E C18 H21 SING N N 57 A1B0E C17 H22 SING N N 58 A1B0E C17 H23 SING N N 59 A1B0E C14 H24 SING N N 60 A1B0E C14 H25 SING N N 61 A1B0E N3 H26 SING N N 62 A1B0E C6 H27 SING N N 63 A1B0E N H28 SING N N 64 A1B0E N H29 SING N N 65 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1B0E SMILES ACDLabs 14.52 "NC(=O)c1cc2nc(NCCOCCCCNCc3cccc(Cl)c3)c3ccncc3c2cc1" A1B0E InChI InChI 1.06 "InChI=1S/C26H28ClN5O2/c27-20-5-3-4-18(14-20)16-29-9-1-2-12-34-13-11-31-26-22-8-10-30-17-23(22)21-7-6-19(25(28)33)15-24(21)32-26/h3-8,10,14-15,17,29H,1-2,9,11-13,16H2,(H2,28,33)(H,31,32)" A1B0E InChIKey InChI 1.06 ZCLCMLMHEMDXAK-UHFFFAOYSA-N A1B0E SMILES_CANONICAL CACTVS 3.385 "NC(=O)c1ccc2c(c1)nc(NCCOCCCCNCc3cccc(Cl)c3)c4ccncc24" A1B0E SMILES CACTVS 3.385 "NC(=O)c1ccc2c(c1)nc(NCCOCCCCNCc3cccc(Cl)c3)c4ccncc24" A1B0E SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "c1cc(cc(c1)Cl)CNCCCCOCCNc2c3ccncc3c4ccc(cc4n2)C(=O)N" A1B0E SMILES "OpenEye OEToolkits" 3.1.0.0 "c1cc(cc(c1)Cl)CNCCCCOCCNc2c3ccncc3c4ccc(cc4n2)C(=O)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1B0E "SYSTEMATIC NAME" ACDLabs 14.52 "5-{[2-(4-{[(3-chlorophenyl)methyl]amino}butoxy)ethyl]amino}benzo[c][2,6]naphthyridine-8-carboxamide" A1B0E "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "5-[2-[4-[(3-chlorophenyl)methylamino]butoxy]ethylamino]benzo[c][2,6]naphthyridine-8-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1B0E "Create component" 2025-03-12 RCSB A1B0E "Initial release" 2026-01-14 RCSB #