data_A1B0F # _chem_comp.id A1B0F _chem_comp.name "5-({2-[4-({[3-fluoro-4-(trifluoromethoxy)phenyl]methyl}amino)butoxy]ethyl}amino)benzo[c][2,6]naphthyridine-8-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C27 H27 F4 N5 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-03-12 _chem_comp.pdbx_modified_date 2026-01-09 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 545.529 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1B0F _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7I8A _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1B0F C1 C1 C 0 1 Y N N N N N -5.459 -0.484 16.492 -9.817 1.151 -0.404 C1 A1B0F 1 A1B0F C2 C2 C 0 1 Y N N N N N -5.614 -0.373 17.912 -10.204 -0.129 -0.823 C2 A1B0F 2 A1B0F C3 C3 C 0 1 Y N N N N N -5.725 0.893 18.483 -9.323 -1.168 -0.771 C3 A1B0F 3 A1B0F C4 C4 C 0 1 Y N N N N N -5.677 2.054 17.648 -8.026 -0.965 -0.296 C4 A1B0F 4 A1B0F C5 C5 C 0 1 Y N N N N N -5.513 1.907 16.257 -7.617 0.319 0.132 C5 A1B0F 5 A1B0F C6 C6 C 0 1 Y N N N N N -5.419 0.627 15.670 -8.533 1.378 0.071 C6 A1B0F 6 A1B0F C10 C7 C 0 1 Y N N N N N -5.859 6.010 19.180 -5.217 -4.063 -0.077 C10 A1B0F 7 A1B0F C12 C8 C 0 1 Y N N N N N -5.747 3.406 18.157 -7.060 -2.066 -0.229 C12 A1B0F 8 A1B0F C13 C9 C 0 1 N N N N N N -4.466 5.201 13.782 -3.893 1.269 1.581 C13 A1B0F 9 A1B0F C14 C10 C 0 1 N N N N N N -3.273 6.104 14.211 -2.447 1.336 2.076 C14 A1B0F 10 A1B0F C15 C11 C 0 1 N N N N N N -1.007 5.537 13.832 -0.176 1.096 1.347 C15 A1B0F 11 A1B0F C16 C12 C 0 1 N N N N N N -0.194 6.784 14.243 0.677 0.788 0.115 C16 A1B0F 12 A1B0F C18 C13 C 0 1 N N N N N N 1.883 7.376 15.601 3.011 0.519 -0.735 C18 A1B0F 13 A1B0F C19 C14 C 0 1 N N N N N N 4.021 7.969 16.699 5.284 0.264 -1.529 C19 A1B0F 14 A1B0F C20 C15 C 0 1 Y N N N N N 5.441 7.504 16.987 6.733 0.312 -1.115 C20 A1B0F 15 A1B0F C21 C16 C 0 1 Y N N N N N 6.432 8.464 17.329 7.358 -0.833 -0.659 C21 A1B0F 16 A1B0F C23 C17 C 0 1 Y N N N N N 8.032 6.673 17.649 9.392 0.398 -0.355 C23 A1B0F 17 A1B0F F3 F1 F 0 1 N N N N N N 8.729 5.061 19.712 10.583 -1.235 1.605 F3 A1B0F 18 A1B0F C26 C18 C 0 1 N N N N N N 9.651 5.860 19.216 11.281 -0.781 0.481 C26 A1B0F 19 A1B0F F1 F2 F 0 1 N N N N N N 9.784 6.916 19.984 12.620 -0.560 0.822 F1 A1B0F 20 A1B0F F2 F3 F 0 1 N N N N N N 10.781 5.190 19.262 11.210 -1.744 -0.532 F2 A1B0F 21 A1B0F O2 O1 O 0 1 N N N N N N 9.309 6.215 17.898 10.699 0.439 0.019 O2 A1B0F 22 A1B0F C22 C19 C 0 1 Y N N N N N 7.738 8.057 17.670 8.686 -0.793 -0.279 C22 A1B0F 23 A1B0F C24 C20 C 0 1 Y N N N N N 7.059 5.717 17.322 8.764 1.547 -0.818 C24 A1B0F 24 A1B0F F F4 F 0 1 N N N N N N 7.398 4.433 17.416 9.449 2.709 -0.894 F A1B0F 25 A1B0F C25 C21 C 0 1 Y N N N N N 5.756 6.123 16.975 7.435 1.501 -1.197 C25 A1B0F 26 A1B0F N4 N1 N 0 1 N N N N N N 3.236 6.909 15.984 4.433 0.557 -0.368 N4 A1B0F 27 A1B0F C17 C22 C 0 1 N N N N N N 1.170 6.315 14.774 2.158 0.827 0.497 C17 A1B0F 28 A1B0F O1 O2 O 0 1 N N N N N N -2.265 5.912 13.298 -1.559 1.059 0.990 O1 A1B0F 29 A1B0F N3 N2 N 0 1 N N N N N N -5.360 5.284 14.951 -4.204 -0.100 1.164 N3 A1B0F 30 A1B0F C7 C23 C 0 1 Y N N N N N -5.450 4.228 15.851 -5.461 -0.406 0.678 C7 A1B0F 31 A1B0F C8 C24 C 0 1 Y N N N N N -5.642 4.510 17.274 -5.765 -1.775 0.264 C8 A1B0F 32 A1B0F C11 C25 C 0 1 Y N N N N N -5.904 3.695 19.566 -7.356 -3.368 -0.624 C11 A1B0F 33 A1B0F N2 N3 N 0 1 Y N N N N N -5.950 4.956 20.062 -6.434 -4.304 -0.533 N2 A1B0F 34 A1B0F C9 C26 C 0 1 Y N N N N N -5.703 5.831 17.801 -4.835 -2.815 0.335 C9 A1B0F 35 A1B0F N1 N4 N 0 1 Y N N N N N -5.394 2.990 15.347 -6.371 0.534 0.592 N1 A1B0F 36 A1B0F C C27 C 0 1 N N N N N N -5.291 -1.816 15.892 -10.782 2.270 -0.473 C A1B0F 37 A1B0F O O3 O 0 1 N N N N N N -5.491 -2.050 14.698 -10.451 3.381 -0.110 O A1B0F 38 A1B0F N N5 N 0 1 N N N N N N -4.871 -2.800 16.726 -12.028 2.056 -0.939 N A1B0F 39 A1B0F H1 H1 H 0 1 N N N N N N -5.644 -1.258 18.531 -11.206 -0.293 -1.191 H1 A1B0F 40 A1B0F H2 H2 H 0 1 N N N N N N -5.847 0.998 19.551 -9.630 -2.151 -1.096 H2 A1B0F 41 A1B0F H3 H3 H 0 1 N N N N N N -5.318 0.518 14.600 -8.240 2.366 0.393 H3 A1B0F 42 A1B0F H4 H4 H 0 1 N N N N N N -5.910 7.016 19.569 -4.504 -4.873 -0.027 H4 A1B0F 43 A1B0F H5 H5 H 0 1 N N N N N N -4.956 5.591 12.878 -4.566 1.566 2.385 H5 A1B0F 44 A1B0F H6 H6 H 0 1 N N N N N N -4.138 4.166 13.604 -4.019 1.944 0.734 H6 A1B0F 45 A1B0F H7 H7 H 0 1 N N N N N N -2.929 5.820 15.217 -2.242 2.332 2.468 H7 A1B0F 46 A1B0F H8 H8 H 0 1 N N N N N N -3.582 7.160 14.214 -2.298 0.597 2.864 H8 A1B0F 47 A1B0F H9 H9 H 0 1 N N N N N N -1.165 4.902 14.716 0.020 0.353 2.120 H9 A1B0F 48 A1B0F H10 H10 H 0 1 N N N N N N -0.445 4.974 13.072 0.076 2.088 1.724 H10 A1B0F 49 A1B0F H11 H11 H 0 1 N N N N N N -0.049 7.438 13.371 0.426 -0.203 -0.262 H11 A1B0F 50 A1B0F H12 H12 H 0 1 N N N N N N -0.730 7.335 15.030 0.481 1.531 -0.658 H12 A1B0F 51 A1B0F H13 H13 H 0 1 N N N N N N 1.972 8.298 15.008 2.815 1.262 -1.508 H13 A1B0F 52 A1B0F H14 H14 H 0 1 N N N N N N 1.299 7.580 16.511 2.760 -0.472 -1.112 H14 A1B0F 53 A1B0F H15 H15 H 0 1 N N N N N N 4.060 8.871 16.071 5.104 1.006 -2.307 H15 A1B0F 54 A1B0F H16 H16 H 0 1 N N N N N N 3.521 8.205 17.650 5.049 -0.729 -1.912 H16 A1B0F 55 A1B0F H17 H17 H 0 1 N N N N N N 6.182 9.515 17.328 6.808 -1.761 -0.599 H17 A1B0F 56 A1B0F H18 H18 H 0 1 N N N N N N 8.493 8.781 17.940 9.173 -1.689 0.078 H18 A1B0F 57 A1B0F H19 H19 H 0 1 N N N N N N 5.008 5.393 16.704 6.945 2.393 -1.558 H19 A1B0F 58 A1B0F H20 H20 H 0 1 N N N N N N 3.144 6.115 16.586 4.676 1.445 0.044 H20 A1B0F 59 A1B0F H22 H22 H 0 1 N N N N N N 1.015 5.426 15.403 2.410 1.819 0.874 H22 A1B0F 60 A1B0F H23 H23 H 0 1 N N N N N N 1.808 6.051 13.917 2.354 0.084 1.270 H23 A1B0F 61 A1B0F H24 H24 H 0 1 N N N N N N -5.070 6.084 15.477 -3.528 -0.793 1.230 H24 A1B0F 62 A1B0F H25 H25 H 0 1 N N N N N N -5.989 2.868 20.255 -8.338 -3.609 -1.002 H25 A1B0F 63 A1B0F H26 H26 H 0 1 N N N N N N -5.630 6.685 17.144 -3.837 -2.638 0.707 H26 A1B0F 64 A1B0F H27 H27 H 0 1 N N N N N N -4.721 -3.724 16.374 -12.292 1.169 -1.228 H27 A1B0F 65 A1B0F H28 H28 H 0 1 N N N N N N -4.711 -2.602 17.693 -12.661 2.790 -0.984 H28 A1B0F 66 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1B0F O1 C15 SING N N 1 A1B0F O1 C14 SING N N 2 A1B0F C13 C14 SING N N 3 A1B0F C13 N3 SING N N 4 A1B0F C15 C16 SING N N 5 A1B0F C16 C17 SING N N 6 A1B0F O C DOUB N N 7 A1B0F C17 C18 SING N N 8 A1B0F N3 C7 SING N N 9 A1B0F N1 C7 DOUB Y N 10 A1B0F N1 C5 SING Y N 11 A1B0F C18 N4 SING N N 12 A1B0F C6 C5 DOUB Y N 13 A1B0F C6 C1 SING Y N 14 A1B0F C7 C8 SING Y N 15 A1B0F C C1 SING N N 16 A1B0F C N SING N N 17 A1B0F N4 C19 SING N N 18 A1B0F C5 C4 SING Y N 19 A1B0F C1 C2 DOUB Y N 20 A1B0F C19 C20 SING N N 21 A1B0F C25 C20 DOUB Y N 22 A1B0F C25 C24 SING Y N 23 A1B0F C20 C21 SING Y N 24 A1B0F C8 C9 DOUB Y N 25 A1B0F C8 C12 SING Y N 26 A1B0F C24 F SING N N 27 A1B0F C24 C23 DOUB Y N 28 A1B0F C21 C22 DOUB Y N 29 A1B0F C4 C12 SING Y N 30 A1B0F C4 C3 DOUB Y N 31 A1B0F C23 C22 SING Y N 32 A1B0F C23 O2 SING N N 33 A1B0F C9 C10 SING Y N 34 A1B0F O2 C26 SING N N 35 A1B0F C2 C3 SING Y N 36 A1B0F C12 C11 DOUB Y N 37 A1B0F C10 N2 DOUB Y N 38 A1B0F C26 F2 SING N N 39 A1B0F C26 F3 SING N N 40 A1B0F C26 F1 SING N N 41 A1B0F C11 N2 SING Y N 42 A1B0F C2 H1 SING N N 43 A1B0F C3 H2 SING N N 44 A1B0F C6 H3 SING N N 45 A1B0F C10 H4 SING N N 46 A1B0F C13 H5 SING N N 47 A1B0F C13 H6 SING N N 48 A1B0F C14 H7 SING N N 49 A1B0F C14 H8 SING N N 50 A1B0F C15 H9 SING N N 51 A1B0F C15 H10 SING N N 52 A1B0F C16 H11 SING N N 53 A1B0F C16 H12 SING N N 54 A1B0F C18 H13 SING N N 55 A1B0F C18 H14 SING N N 56 A1B0F C19 H15 SING N N 57 A1B0F C19 H16 SING N N 58 A1B0F C21 H17 SING N N 59 A1B0F C22 H18 SING N N 60 A1B0F C25 H19 SING N N 61 A1B0F N4 H20 SING N N 62 A1B0F C17 H22 SING N N 63 A1B0F C17 H23 SING N N 64 A1B0F N3 H24 SING N N 65 A1B0F C11 H25 SING N N 66 A1B0F C9 H26 SING N N 67 A1B0F N H27 SING N N 68 A1B0F N H28 SING N N 69 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1B0F SMILES ACDLabs 14.52 "FC(F)(F)Oc1ccc(cc1F)CNCCCCOCCNc1nc2cc(ccc2c2cnccc12)C(N)=O" A1B0F InChI InChI 1.06 "InChI=1S/C27H27F4N5O3/c28-22-13-17(3-6-24(22)39-27(29,30)31)15-33-8-1-2-11-38-12-10-35-26-20-7-9-34-16-21(20)19-5-4-18(25(32)37)14-23(19)36-26/h3-7,9,13-14,16,33H,1-2,8,10-12,15H2,(H2,32,37)(H,35,36)" A1B0F InChIKey InChI 1.06 VNAJSIZEQWWMNK-UHFFFAOYSA-N A1B0F SMILES_CANONICAL CACTVS 3.385 "NC(=O)c1ccc2c(c1)nc(NCCOCCCCNCc3ccc(OC(F)(F)F)c(F)c3)c4ccncc24" A1B0F SMILES CACTVS 3.385 "NC(=O)c1ccc2c(c1)nc(NCCOCCCCNCc3ccc(OC(F)(F)F)c(F)c3)c4ccncc24" A1B0F SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "c1cc(c(cc1CNCCCCOCCNc2c3ccncc3c4ccc(cc4n2)C(=O)N)F)OC(F)(F)F" A1B0F SMILES "OpenEye OEToolkits" 3.1.0.0 "c1cc(c(cc1CNCCCCOCCNc2c3ccncc3c4ccc(cc4n2)C(=O)N)F)OC(F)(F)F" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1B0F "SYSTEMATIC NAME" ACDLabs 14.52 "5-({2-[4-({[3-fluoro-4-(trifluoromethoxy)phenyl]methyl}amino)butoxy]ethyl}amino)benzo[c][2,6]naphthyridine-8-carboxamide" A1B0F "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "5-[2-[4-[[3-fluoranyl-4-(trifluoromethyloxy)phenyl]methylamino]butoxy]ethylamino]benzo[c][2,6]naphthyridine-8-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1B0F "Create component" 2025-03-12 RCSB A1B0F "Initial release" 2026-01-14 RCSB #