data_A1B0K # _chem_comp.id A1B0K _chem_comp.name "5-{[2-(4-{[(2-chloro[1,1'-biphenyl]-4-yl)methyl]amino}butoxy)ethyl]amino}benzo[c][2,6]naphthyridine-8-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C32 H32 Cl N5 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-03-12 _chem_comp.pdbx_modified_date 2026-01-09 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 554.082 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1B0K _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7I87 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1B0K C1 C1 C 0 1 Y N N N N N -5.277 -0.833 16.055 -10.013 1.370 -0.398 C1 A1B0K 1 A1B0K C2 C2 C 0 1 Y N N N N N -5.432 -0.671 17.430 -10.460 0.119 -0.844 C2 A1B0K 2 A1B0K C3 C3 C 0 1 Y N N N N N -5.573 0.570 17.975 -9.634 -0.965 -0.803 C3 A1B0K 3 A1B0K C4 C4 C 0 1 Y N N N N N -5.513 1.729 17.182 -8.332 -0.836 -0.317 C4 A1B0K 4 A1B0K C5 C5 C 0 1 Y N N N N N -5.316 1.572 15.792 -7.862 0.418 0.137 C5 A1B0K 5 A1B0K C6 C6 C 0 1 Y N N N N N -5.242 0.272 15.242 -8.723 1.523 0.090 C6 A1B0K 6 A1B0K C7 C7 C 0 1 Y N N N N N -5.335 3.879 15.418 -5.749 -0.424 0.683 C7 A1B0K 7 A1B0K C20 C8 C 0 1 Y N N N N N 5.372 7.120 16.717 6.476 -0.291 -1.034 C20 A1B0K 8 A1B0K C21 C9 C 0 1 Y N N N N N 5.722 5.922 17.327 7.039 -1.476 -0.594 C21 A1B0K 9 A1B0K C22 C10 C 0 1 Y N N N N N 7.046 5.611 17.591 8.364 -1.513 -0.211 C22 A1B0K 10 A1B0K C23 C11 C 0 1 Y N N N N N 8.068 6.507 17.275 9.136 -0.354 -0.268 C23 A1B0K 11 A1B0K C24 C12 C 0 1 Y N N N N N 7.700 7.718 16.672 8.564 0.837 -0.712 C24 A1B0K 12 A1B0K C25 C13 C 0 1 Y N N N N N 6.382 8.017 16.390 7.236 0.863 -1.092 C25 A1B0K 13 A1B0K C26 C14 C 0 1 Y N N N N N 9.471 6.122 17.601 10.561 -0.388 0.143 C26 A1B0K 14 A1B0K C27 C15 C 0 1 Y N N N N N 9.922 6.122 18.924 11.542 0.145 -0.690 C27 A1B0K 15 A1B0K C9 C16 C 0 1 Y N N N N N -5.829 5.460 17.361 -5.243 -2.855 0.302 C9 A1B0K 16 A1B0K C11 C17 C 0 1 Y N N N N N -5.877 3.340 19.071 -7.782 -3.263 -0.682 C11 A1B0K 17 A1B0K C13 C18 C 0 1 N N N N N N -4.769 4.801 13.134 -4.105 1.154 1.623 C13 A1B0K 18 A1B0K C14 C19 C 0 1 N N N N N N -3.292 4.478 12.974 -2.660 1.139 2.126 C14 A1B0K 19 A1B0K C28 C20 C 0 1 Y N N N N N 11.234 5.787 19.226 12.866 0.111 -0.303 C28 A1B0K 20 A1B0K C29 C21 C 0 1 Y N N N N N 12.113 5.433 18.217 13.221 -0.452 0.910 C29 A1B0K 21 A1B0K C31 C22 C 0 1 Y N N N N N 10.368 5.755 16.593 10.923 -0.949 1.367 C31 A1B0K 22 A1B0K C15 C23 C 0 1 N N N N N N -1.108 5.215 13.495 -0.399 0.798 1.406 C15 A1B0K 23 A1B0K C8 C24 C 0 1 Y N N N N N -5.620 4.164 16.815 -6.119 -1.769 0.244 C8 A1B0K 24 A1B0K C10 C25 C 0 1 Y N N N N N -6.010 5.594 18.708 -5.685 -4.075 -0.133 C10 A1B0K 25 A1B0K C12 C26 C 0 1 Y N N N N N -5.671 3.057 17.698 -7.423 -1.985 -0.262 C12 A1B0K 26 A1B0K N2 N1 N 0 1 Y N N N N N -6.029 4.568 19.571 -6.909 -4.247 -0.602 N2 A1B0K 27 A1B0K N3 N2 N 0 1 N N N N N N -5.121 4.963 14.536 -4.482 -0.191 1.182 N3 A1B0K 28 A1B0K N1 N3 N 0 1 Y N N N N N -5.211 2.636 14.930 -6.610 0.562 0.609 N1 A1B0K 29 A1B0K O1 O1 O 0 1 N N N N N N -2.505 5.517 13.550 -1.781 0.837 1.041 O1 A1B0K 30 A1B0K CL CL1 CL 0 0 N N N N N N 8.892 8.923 16.297 9.517 2.286 -0.785 CL A1B0K 31 A1B0K C30 C27 C 0 1 Y N N N N N 11.676 5.406 16.902 12.251 -0.983 1.741 C30 A1B0K 32 A1B0K C19 C28 C 0 1 N N N N N N 3.935 7.441 16.403 5.029 -0.259 -1.456 C19 A1B0K 33 A1B0K N4 N4 N 0 1 N N N N N N 3.321 6.553 15.406 4.187 0.056 -0.295 N4 A1B0K 34 A1B0K C18 C29 C 0 1 N N N N N N 1.901 6.882 15.223 2.767 0.096 -0.669 C18 A1B0K 35 A1B0K C17 C30 C 0 1 N N N N N N 1.156 5.850 14.413 1.923 0.426 0.563 C17 A1B0K 36 A1B0K C16 C31 C 0 1 N N N N N N -0.342 6.230 14.293 0.444 0.468 0.173 C16 A1B0K 37 A1B0K C C32 C 0 1 N N N N N N -5.033 -2.201 15.502 -10.920 2.537 -0.454 C A1B0K 38 A1B0K O O2 O 0 1 N N N N N N -5.324 -2.454 14.301 -10.536 3.624 -0.069 O A1B0K 39 A1B0K N N5 N 0 1 N N N N N N -4.487 -3.081 16.306 -12.172 2.395 -0.933 N A1B0K 40 A1B0K H1 H1 H 0 1 N N N N N N -5.441 -1.540 18.072 -11.467 0.012 -1.222 H1 A1B0K 41 A1B0K H2 H2 H 0 1 N N N N N N -5.734 0.665 19.039 -9.988 -1.925 -1.148 H2 A1B0K 42 A1B0K H3 H3 H 0 1 N N N N N N -5.157 0.147 14.173 -8.384 2.489 0.431 H3 A1B0K 43 A1B0K H4 H4 H 0 1 N N N N N N 4.948 5.220 17.600 6.440 -2.373 -0.551 H4 A1B0K 44 A1B0K H5 H5 H 0 1 N N N N N N 7.290 4.663 18.047 8.802 -2.438 0.132 H5 A1B0K 45 A1B0K H6 H6 H 0 1 N N N N N N 6.134 8.953 15.912 6.791 1.785 -1.437 H6 A1B0K 46 A1B0K H7 H7 H 0 1 N N N N N N 9.241 6.386 19.720 11.267 0.585 -1.637 H7 A1B0K 47 A1B0K H8 H8 H 0 1 N N N N N N -5.844 6.328 16.718 -4.239 -2.735 0.682 H8 A1B0K 48 A1B0K H9 H9 H 0 1 N N N N N N -5.913 2.507 19.758 -8.772 -3.448 -1.072 H9 A1B0K 49 A1B0K H10 H10 H 0 1 N N N N N N -4.993 5.735 12.597 -4.767 1.471 2.429 H10 A1B0K 50 A1B0K H11 H11 H 0 1 N N N N N N -5.364 3.981 12.707 -4.191 1.849 0.788 H11 A1B0K 51 A1B0K H12 H12 H 0 1 N N N N N N -3.069 3.528 13.481 -2.408 2.117 2.537 H12 A1B0K 52 A1B0K H13 H13 H 0 1 N N N N N N -3.052 4.388 11.904 -2.553 0.381 2.902 H13 A1B0K 53 A1B0K H14 H14 H 0 1 N N N N N N 11.571 5.802 20.252 13.628 0.524 -0.948 H14 A1B0K 54 A1B0K H15 H15 H 0 1 N N N N N N 13.136 5.179 18.454 14.258 -0.477 1.209 H15 A1B0K 55 A1B0K H16 H16 H 0 1 N N N N N N 10.040 5.743 15.564 10.167 -1.364 2.016 H16 A1B0K 56 A1B0K H17 H17 H 0 1 N N N N N N -0.933 4.213 13.913 -0.100 1.769 1.801 H17 A1B0K 57 A1B0K H18 H18 H 0 1 N N N N N N -0.769 5.240 12.449 -0.246 0.033 2.167 H18 A1B0K 58 A1B0K H19 H19 H 0 1 N N N N N N -6.147 6.590 19.103 -5.014 -4.921 -0.093 H19 A1B0K 59 A1B0K H20 H20 H 0 1 N N N N N N -4.384 5.504 14.942 -3.842 -0.917 1.239 H20 A1B0K 60 A1B0K H21 H21 H 0 1 N N N N N N 12.355 5.113 16.115 12.533 -1.418 2.689 H21 A1B0K 61 A1B0K H22 H22 H 0 1 N N N N N N 3.888 8.472 16.022 4.891 0.504 -2.223 H22 A1B0K 62 A1B0K H23 H23 H 0 1 N N N N N N 3.354 7.367 17.334 4.746 -1.232 -1.857 H23 A1B0K 63 A1B0K H24 H24 H 0 1 N N N N N N 3.401 5.606 15.716 4.472 0.924 0.134 H24 A1B0K 64 A1B0K H26 H26 H 0 1 N N N N N N 1.829 7.851 14.707 2.614 0.861 -1.430 H26 A1B0K 65 A1B0K H27 H27 H 0 1 N N N N N N 1.428 6.958 16.213 2.468 -0.875 -1.065 H27 A1B0K 66 A1B0K H28 H28 H 0 1 N N N N N N 1.242 4.871 14.907 2.077 -0.339 1.324 H28 A1B0K 67 A1B0K H29 H29 H 0 1 N N N N N N 1.596 5.793 13.407 2.222 1.397 0.959 H29 A1B0K 68 A1B0K H30 H30 H 0 1 N N N N N N -0.423 7.209 13.798 0.146 -0.503 -0.222 H30 A1B0K 69 A1B0K H31 H31 H 0 1 N N N N N N -0.776 6.292 15.302 0.291 1.233 -0.588 H31 A1B0K 70 A1B0K H32 H32 H 0 1 N N N N N N -4.282 -4.002 15.974 -12.478 1.527 -1.240 H32 A1B0K 71 A1B0K H33 H33 H 0 1 N N N N N N -4.275 -2.831 17.251 -12.766 3.160 -0.969 H33 A1B0K 72 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1B0K C14 C13 SING N N 1 A1B0K C14 O1 SING N N 2 A1B0K C13 N3 SING N N 3 A1B0K C15 O1 SING N N 4 A1B0K C15 C16 SING N N 5 A1B0K C16 C17 SING N N 6 A1B0K O C DOUB N N 7 A1B0K C17 C18 SING N N 8 A1B0K N3 C7 SING N N 9 A1B0K N1 C7 DOUB Y N 10 A1B0K N1 C5 SING Y N 11 A1B0K C18 N4 SING N N 12 A1B0K C6 C5 DOUB Y N 13 A1B0K C6 C1 SING Y N 14 A1B0K N4 C19 SING N N 15 A1B0K C7 C8 SING Y N 16 A1B0K C C1 SING N N 17 A1B0K C N SING N N 18 A1B0K C5 C4 SING Y N 19 A1B0K C1 C2 DOUB Y N 20 A1B0K CL C24 SING N N 21 A1B0K C25 C24 DOUB Y N 22 A1B0K C25 C20 SING Y N 23 A1B0K C19 C20 SING N N 24 A1B0K C31 C30 DOUB Y N 25 A1B0K C31 C26 SING Y N 26 A1B0K C24 C23 SING Y N 27 A1B0K C20 C21 DOUB Y N 28 A1B0K C8 C9 DOUB Y N 29 A1B0K C8 C12 SING Y N 30 A1B0K C30 C29 SING Y N 31 A1B0K C4 C12 SING Y N 32 A1B0K C4 C3 DOUB Y N 33 A1B0K C23 C22 DOUB Y N 34 A1B0K C23 C26 SING N N 35 A1B0K C21 C22 SING Y N 36 A1B0K C9 C10 SING Y N 37 A1B0K C2 C3 SING Y N 38 A1B0K C26 C27 DOUB Y N 39 A1B0K C12 C11 DOUB Y N 40 A1B0K C29 C28 DOUB Y N 41 A1B0K C10 N2 DOUB Y N 42 A1B0K C27 C28 SING Y N 43 A1B0K C11 N2 SING Y N 44 A1B0K C2 H1 SING N N 45 A1B0K C3 H2 SING N N 46 A1B0K C6 H3 SING N N 47 A1B0K C21 H4 SING N N 48 A1B0K C22 H5 SING N N 49 A1B0K C25 H6 SING N N 50 A1B0K C27 H7 SING N N 51 A1B0K C9 H8 SING N N 52 A1B0K C11 H9 SING N N 53 A1B0K C13 H10 SING N N 54 A1B0K C13 H11 SING N N 55 A1B0K C14 H12 SING N N 56 A1B0K C14 H13 SING N N 57 A1B0K C28 H14 SING N N 58 A1B0K C29 H15 SING N N 59 A1B0K C31 H16 SING N N 60 A1B0K C15 H17 SING N N 61 A1B0K C15 H18 SING N N 62 A1B0K C10 H19 SING N N 63 A1B0K N3 H20 SING N N 64 A1B0K C30 H21 SING N N 65 A1B0K C19 H22 SING N N 66 A1B0K C19 H23 SING N N 67 A1B0K N4 H24 SING N N 68 A1B0K C18 H26 SING N N 69 A1B0K C18 H27 SING N N 70 A1B0K C17 H28 SING N N 71 A1B0K C17 H29 SING N N 72 A1B0K C16 H30 SING N N 73 A1B0K C16 H31 SING N N 74 A1B0K N H32 SING N N 75 A1B0K N H33 SING N N 76 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1B0K SMILES ACDLabs 14.52 "NC(=O)c1cc2nc(NCCOCCCCNCc3ccc(c4ccccc4)c(Cl)c3)c3ccncc3c2cc1" A1B0K InChI InChI 1.06 "InChI=1S/C32H32ClN5O2/c33-29-18-22(8-10-25(29)23-6-2-1-3-7-23)20-35-13-4-5-16-40-17-15-37-32-27-12-14-36-21-28(27)26-11-9-24(31(34)39)19-30(26)38-32/h1-3,6-12,14,18-19,21,35H,4-5,13,15-17,20H2,(H2,34,39)(H,37,38)" A1B0K InChIKey InChI 1.06 JXVHFVDLYKIXHT-UHFFFAOYSA-N A1B0K SMILES_CANONICAL CACTVS 3.385 "NC(=O)c1ccc2c(c1)nc(NCCOCCCCNCc3ccc(c(Cl)c3)c4ccccc4)c5ccncc25" A1B0K SMILES CACTVS 3.385 "NC(=O)c1ccc2c(c1)nc(NCCOCCCCNCc3ccc(c(Cl)c3)c4ccccc4)c5ccncc25" A1B0K SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "c1ccc(cc1)c2ccc(cc2Cl)CNCCCCOCCNc3c4ccncc4c5ccc(cc5n3)C(=O)N" A1B0K SMILES "OpenEye OEToolkits" 3.1.0.0 "c1ccc(cc1)c2ccc(cc2Cl)CNCCCCOCCNc3c4ccncc4c5ccc(cc5n3)C(=O)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1B0K "SYSTEMATIC NAME" ACDLabs 14.52 "5-{[2-(4-{[(2-chloro[1,1'-biphenyl]-4-yl)methyl]amino}butoxy)ethyl]amino}benzo[c][2,6]naphthyridine-8-carboxamide" A1B0K "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "5-[2-[4-[(3-chloranyl-4-phenyl-phenyl)methylamino]butoxy]ethylamino]benzo[c][2,6]naphthyridine-8-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1B0K "Create component" 2025-03-12 RCSB A1B0K "Initial release" 2026-01-14 RCSB #