data_A1B0M # _chem_comp.id A1B0M _chem_comp.name "methyl N-{[2-({(3Z,5R,8R)-5-[(1H-indol-3-yl)methyl]-2,7-dioxo-1,6-diazacyclododec-3-en-8-yl}amino)-2-oxoethyl]carbamoyl}-L-valinate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C28 H38 N6 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-03-13 _chem_comp.pdbx_modified_date 2026-08-21 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 554.638 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1B0M _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9NQL _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1B0M C10 C1 C 0 1 N N N N N N 198.068 156.422 187.618 2.740 -1.324 0.010 C10 A1B0M 1 A1B0M C15 C2 C 0 1 N N N N N N 194.215 154.056 186.464 -1.451 -3.395 1.446 C15 A1B0M 2 A1B0M C17 C3 C 0 1 N N N N N N 192.740 154.305 184.394 -3.201 -3.880 -0.271 C17 A1B0M 3 A1B0M C20 C4 C 0 1 N N N N N N 192.813 150.971 185.557 -3.003 -1.157 -2.162 C20 A1B0M 4 A1B0M C22 C5 C 0 1 N N N N N N 193.923 149.956 185.569 -3.254 0.282 -2.100 C22 A1B0M 5 A1B0M C24 C6 C 0 1 N N R N N N 194.502 149.982 188.077 -3.026 0.479 0.375 C24 A1B0M 6 A1B0M C26 C7 C 0 1 Y N N N N N 196.372 149.664 189.981 -5.313 1.032 1.156 C26 A1B0M 7 A1B0M C01 C8 C 0 1 N N N N N N 199.925 153.673 193.725 10.613 1.415 0.981 C01 A1B0M 8 A1B0M O02 O1 O 0 1 N N N N N N 200.434 154.488 192.705 9.556 1.147 0.023 O02 A1B0M 9 A1B0M C03 C9 C 0 1 N N N N N N 201.016 153.865 191.579 8.330 0.917 0.517 C03 A1B0M 10 A1B0M O04 O2 O 0 1 N N N N N N 200.956 152.703 191.452 8.146 0.939 1.711 O04 A1B0M 11 A1B0M C05 C10 C 0 1 N N S N N N 201.687 154.689 190.486 7.182 0.631 -0.417 C05 A1B0M 12 A1B0M N06 N1 N 0 1 N N N N N N 200.724 155.723 190.186 5.960 0.416 0.361 N06 A1B0M 13 A1B0M C07 C11 C 0 1 N N N N N N 199.858 155.607 189.042 4.956 -0.323 -0.150 C07 A1B0M 14 A1B0M O08 O3 O 0 1 N N N N N N 199.932 154.686 188.330 5.064 -0.811 -1.259 O08 A1B0M 15 A1B0M N09 N2 N 0 1 N N N N N N 198.890 156.643 188.777 3.832 -0.520 0.566 N09 A1B0M 16 A1B0M C11 C12 C 0 1 N N N N N N 196.910 155.438 187.825 1.609 -1.390 1.003 C11 A1B0M 17 A1B0M O12 O4 O 0 1 N N N N N N 196.204 155.461 188.762 1.704 -0.822 2.070 O12 A1B0M 18 A1B0M N13 N3 N 0 1 N N N N N N 196.695 154.457 186.806 0.490 -2.080 0.705 N13 A1B0M 19 A1B0M C14 C13 C 0 1 N N R N N N 195.591 153.531 186.875 -0.607 -2.144 1.667 C14 A1B0M 20 A1B0M C16 C14 C 0 1 N N N N N N 194.157 154.121 184.939 -1.707 -3.631 -0.043 C16 A1B0M 21 A1B0M C18 C15 C 0 1 N N N N N N 191.954 152.999 184.311 -3.582 -3.453 -1.691 C18 A1B0M 22 A1B0M N19 N4 N 0 1 N N N N N N 192.889 151.927 184.493 -3.949 -2.019 -1.672 N19 A1B0M 23 A1B0M O21 O5 O 0 1 N N N N N N 191.976 151.025 186.363 -1.995 -1.601 -2.671 O21 A1B0M 24 A1B0M C23 C16 C 0 1 N N N N N N 194.324 149.049 186.877 -3.275 1.014 -1.009 C23 A1B0M 25 A1B0M C25 C17 C 0 1 N N N N N N 195.240 149.145 189.114 -4.323 -0.086 0.955 C25 A1B0M 26 A1B0M C27 C18 C 0 1 Y N N N N N 197.480 150.404 189.646 -5.501 1.740 2.281 C27 A1B0M 27 A1B0M N28 N5 N 0 1 Y N N N N N 198.195 150.542 190.749 -6.480 2.675 2.085 N28 A1B0M 28 A1B0M C29 C19 C 0 1 Y N N N N N 197.606 149.924 191.802 -6.959 2.589 0.797 C29 A1B0M 29 A1B0M C30 C20 C 0 1 Y N N N N N 197.962 149.797 193.167 -7.933 3.286 0.089 C30 A1B0M 30 A1B0M C31 C21 C 0 1 Y N N N N N 197.143 149.069 194.021 -8.190 2.958 -1.224 C31 A1B0M 31 A1B0M C32 C22 C 0 1 Y N N N N N 195.976 148.470 193.553 -7.486 1.937 -1.850 C32 A1B0M 32 A1B0M C33 C23 C 0 1 Y N N N N N 195.623 148.601 192.221 -6.526 1.240 -1.173 C33 A1B0M 33 A1B0M C34 C24 C 0 1 Y N N N N N 196.466 149.342 191.355 -6.248 1.557 0.159 C34 A1B0M 34 A1B0M N35 N6 N 0 1 N N N N N N 194.939 151.205 187.416 -1.978 -0.570 0.328 N35 A1B0M 35 A1B0M C36 C25 C 0 1 N N N N N N 195.308 152.485 187.946 -1.474 -0.916 1.559 C36 A1B0M 36 A1B0M O37 O6 O 0 1 N N N N N N 195.373 152.688 189.109 -1.706 -0.244 2.545 O37 A1B0M 37 A1B0M C38 C26 C 0 1 N N N N N N 202.981 155.382 190.902 6.984 1.820 -1.360 C38 A1B0M 38 A1B0M C39 C27 C 0 1 N N N N N N 203.544 156.120 189.690 8.260 2.044 -2.173 C39 A1B0M 39 A1B0M C40 C28 C 0 1 N N N N N N 202.831 156.333 192.095 5.819 1.530 -2.309 C40 A1B0M 40 A1B0M H08 H1 H 0 1 N N N N N N 198.709 156.031 186.814 2.387 -0.866 -0.914 H08 A1B0M 41 A1B0M H07 H2 H 0 1 N N N N N N 197.644 157.389 187.311 3.100 -2.331 -0.199 H07 A1B0M 42 A1B0M H13 H3 H 0 1 N N N N N N 194.060 155.061 186.884 -0.942 -4.260 1.871 H13 A1B0M 43 A1B0M H12 H4 H 0 1 N N N N N N 193.433 153.378 186.837 -2.411 -3.275 1.960 H12 A1B0M 44 A1B0M H17 H5 H 0 1 N N N N N N 192.807 154.738 183.385 -3.418 -4.942 -0.142 H17 A1B0M 45 A1B0M H16 H6 H 0 1 N N N N N N 192.198 154.998 185.055 -3.779 -3.299 0.445 H16 A1B0M 46 A1B0M H21 H7 H 0 1 N N N N N N 194.491 149.815 184.661 -3.447 0.800 -3.051 H21 A1B0M 47 A1B0M H23 H9 H 0 1 N N N N N N 193.496 150.168 188.481 -2.684 1.303 1.014 H23 A1B0M 48 A1B0M H02 H10 H 0 1 N N N N N N 199.509 154.303 194.525 10.361 2.302 1.562 H02 A1B0M 49 A1B0M H09 H11 H 0 1 N N N N N N 199.133 153.027 193.318 10.723 0.561 1.650 H09 A1B0M 50 A1B0M H03 H12 H 0 1 N N N N N N 200.733 153.049 194.133 11.551 1.583 0.451 H03 A1B0M 51 A1B0M H04 H13 H 0 1 N N N N N N 201.871 154.057 189.605 7.403 -0.262 -1.001 H04 A1B0M 52 A1B0M H05 H14 H 0 1 N N N N N N 200.658 156.526 190.778 5.874 0.806 1.246 H05 A1B0M 53 A1B0M H06 H15 H 0 1 N N N N N N 198.798 157.453 189.355 3.745 -0.131 1.450 H06 A1B0M 54 A1B0M H10 H16 H 0 1 N N N N N N 197.323 154.412 186.029 0.414 -2.534 -0.149 H10 A1B0M 55 A1B0M H11 H17 H 0 1 N N N N N N 195.815 152.878 186.018 -0.184 -2.182 2.681 H11 A1B0M 56 A1B0M H15 H18 H 0 1 N N N N N N 194.568 153.184 184.534 -1.392 -2.775 -0.627 H15 A1B0M 57 A1B0M H14 H19 H 0 1 N N N N N N 194.773 154.968 184.602 -1.147 -4.513 -0.367 H14 A1B0M 58 A1B0M H18 H20 H 0 1 N N N N N N 191.189 152.969 185.101 -2.733 -3.609 -2.356 H18 A1B0M 59 A1B0M H19 H21 H 0 1 N N N N N N 191.469 152.913 183.327 -4.432 -4.044 -2.034 H19 A1B0M 60 A1B0M H20 H22 H 0 1 N N N N N N 193.639 151.842 183.838 -4.811 -1.712 -1.348 H20 A1B0M 61 A1B0M H01 H23 H 0 1 N N N N N N 194.442 147.976 186.889 -3.492 2.082 -1.109 H01 A1B0M 62 A1B0M H24 H25 H 0 1 N N N N N N 194.469 148.791 189.813 -4.739 -0.821 0.266 H24 A1B0M 63 A1B0M H25 H26 H 0 1 N N N N N N 195.656 148.289 188.563 -4.114 -0.563 1.913 H25 A1B0M 64 A1B0M H26 H27 H 0 1 N N N N N N 197.720 150.797 188.669 -4.959 1.593 3.204 H26 A1B0M 65 A1B0M H27 H28 H 0 1 N N N N N N 199.061 151.039 190.800 -6.792 3.304 2.755 H27 A1B0M 66 A1B0M H28 H29 H 0 1 N N N N N N 198.862 150.262 193.541 -8.486 4.081 0.567 H28 A1B0M 67 A1B0M H29 H30 H 0 1 N N N N N N 197.415 148.966 195.061 -8.946 3.500 -1.772 H29 A1B0M 68 A1B0M H30 H31 H 0 1 N N N N N N 195.349 147.905 194.227 -7.701 1.692 -2.879 H30 A1B0M 69 A1B0M H31 H32 H 0 1 N N N N N N 194.718 148.145 191.847 -5.983 0.447 -1.666 H31 A1B0M 70 A1B0M H32 H33 H 0 1 N N N N N N 194.990 151.140 186.419 -1.651 -0.966 -0.496 H32 A1B0M 71 A1B0M H33 H34 H 0 1 N N N N N N 203.703 154.602 191.185 6.763 2.714 -0.776 H33 A1B0M 72 A1B0M H36 H35 H 0 1 N N N N N N 204.479 156.627 189.971 8.481 1.151 -2.757 H36 A1B0M 73 A1B0M H35 H36 H 0 1 N N N N N N 203.745 155.400 188.883 8.119 2.891 -2.845 H35 A1B0M 74 A1B0M H34 H37 H 0 1 N N N N N N 202.813 156.865 189.342 9.090 2.251 -1.497 H34 A1B0M 75 A1B0M H37 H38 H 0 1 N N N N N N 202.425 155.781 192.956 4.910 1.370 -1.729 H37 A1B0M 76 A1B0M H39 H39 H 0 1 N N N N N N 203.815 156.749 192.358 5.678 2.377 -2.980 H39 A1B0M 77 A1B0M H38 H40 H 0 1 N N N N N N 202.146 157.151 191.828 6.040 0.636 -2.892 H38 A1B0M 78 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1B0M C18 C17 SING N N 1 A1B0M C18 N19 SING N N 2 A1B0M C17 C16 SING N N 3 A1B0M N19 C20 SING N N 4 A1B0M C16 C15 SING N N 5 A1B0M C20 C22 SING N N 6 A1B0M C20 O21 DOUB N N 7 A1B0M C22 C23 DOUB N Z 8 A1B0M C15 C14 SING N N 9 A1B0M N13 C14 SING N N 10 A1B0M N13 C11 SING N N 11 A1B0M C14 C36 SING N N 12 A1B0M C23 C24 SING N N 13 A1B0M N35 C36 SING N N 14 A1B0M N35 C24 SING N N 15 A1B0M C10 C11 SING N N 16 A1B0M C10 N09 SING N N 17 A1B0M C11 O12 DOUB N N 18 A1B0M C36 O37 DOUB N N 19 A1B0M C24 C25 SING N N 20 A1B0M O08 C07 DOUB N N 21 A1B0M N09 C07 SING N N 22 A1B0M C07 N06 SING N N 23 A1B0M C25 C26 SING N N 24 A1B0M C27 C26 DOUB Y N 25 A1B0M C27 N28 SING Y N 26 A1B0M C39 C38 SING N N 27 A1B0M C26 C34 SING Y N 28 A1B0M N06 C05 SING N N 29 A1B0M C05 C38 SING N N 30 A1B0M C05 C03 SING N N 31 A1B0M N28 C29 SING Y N 32 A1B0M C38 C40 SING N N 33 A1B0M C34 C29 DOUB Y N 34 A1B0M C34 C33 SING Y N 35 A1B0M O04 C03 DOUB N N 36 A1B0M C03 O02 SING N N 37 A1B0M C29 C30 SING Y N 38 A1B0M C33 C32 DOUB Y N 39 A1B0M O02 C01 SING N N 40 A1B0M C30 C31 DOUB Y N 41 A1B0M C32 C31 SING Y N 42 A1B0M C10 H08 SING N N 43 A1B0M C10 H07 SING N N 44 A1B0M C15 H13 SING N N 45 A1B0M C15 H12 SING N N 46 A1B0M C17 H17 SING N N 47 A1B0M C17 H16 SING N N 48 A1B0M C22 H21 SING N N 49 A1B0M C24 H23 SING N N 50 A1B0M C01 H02 SING N N 51 A1B0M C01 H09 SING N N 52 A1B0M C01 H03 SING N N 53 A1B0M C05 H04 SING N N 54 A1B0M N06 H05 SING N N 55 A1B0M N09 H06 SING N N 56 A1B0M N13 H10 SING N N 57 A1B0M C14 H11 SING N N 58 A1B0M C16 H15 SING N N 59 A1B0M C16 H14 SING N N 60 A1B0M C18 H18 SING N N 61 A1B0M C18 H19 SING N N 62 A1B0M N19 H20 SING N N 63 A1B0M C23 H01 SING N N 64 A1B0M C25 H24 SING N N 65 A1B0M C25 H25 SING N N 66 A1B0M C27 H26 SING N N 67 A1B0M N28 H27 SING N N 68 A1B0M C30 H28 SING N N 69 A1B0M C31 H29 SING N N 70 A1B0M C32 H30 SING N N 71 A1B0M C33 H31 SING N N 72 A1B0M N35 H32 SING N N 73 A1B0M C38 H33 SING N N 74 A1B0M C39 H36 SING N N 75 A1B0M C39 H35 SING N N 76 A1B0M C39 H34 SING N N 77 A1B0M C40 H37 SING N N 78 A1B0M C40 H39 SING N N 79 A1B0M C40 H38 SING N N 80 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1B0M SMILES ACDLabs 14.52 "O=C(OC)C(NC(=O)NCC(=O)NC1CCCCNC(=O)C=CC(Cc2c[NH]c3ccccc32)NC1=O)C(C)C" A1B0M InChI InChI 1.06 "InChI=1S/C28H38N6O6/c1-17(2)25(27(38)40-3)34-28(39)31-16-24(36)33-22-10-6-7-13-29-23(35)12-11-19(32-26(22)37)14-18-15-30-21-9-5-4-8-20(18)21/h4-5,8-9,11-12,15,17,19,22,25,30H,6-7,10,13-14,16H2,1-3H3,(H,29,35)(H,32,37)(H,33,36)(H2,31,34,39)/t19-,22+,25-/m0/s1" A1B0M InChIKey InChI 1.06 DAWUTQBEWBJPFI-SWHJIRTISA-N A1B0M SMILES_CANONICAL CACTVS 3.385 "COC(=O)[C@@H](NC(=O)NCC(=O)N[C@@H]1CCCCNC(=O)\C=C/[C@@H](Cc2c[nH]c3ccccc23)NC1=O)C(C)C" A1B0M SMILES CACTVS 3.385 "COC(=O)[CH](NC(=O)NCC(=O)N[CH]1CCCCNC(=O)C=C[CH](Cc2c[nH]c3ccccc23)NC1=O)C(C)C" A1B0M SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "CC(C)[C@@H](C(=O)OC)NC(=O)NCC(=O)N[C@@H]1CCCCNC(=O)C=C[C@H](NC1=O)Cc2c[nH]c3c2cccc3" A1B0M SMILES "OpenEye OEToolkits" 3.1.0.0 "CC(C)C(C(=O)OC)NC(=O)NCC(=O)NC1CCCCNC(=O)C=CC(NC1=O)Cc2c[nH]c3c2cccc3" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1B0M "SYSTEMATIC NAME" ACDLabs 14.52 "methyl N-{[2-({(3Z,5R,8R)-5-[(1H-indol-3-yl)methyl]-2,7-dioxo-1,6-diazacyclododec-3-en-8-yl}amino)-2-oxoethyl]carbamoyl}-L-valinate" A1B0M "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "methyl (2~{S})-2-[[2-[[(5~{R},8~{R})-5-(1~{H}-indol-3-ylmethyl)-2,7-bis(oxidanylidene)-1,6-diazacyclododec-3-en-8-yl]amino]-2-oxidanylidene-ethyl]carbamoylamino]-3-methyl-butanoate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1B0M "Create component" 2025-03-13 RCSB A1B0M "Modify PCM" 2025-03-13 RCSB A1B0M "Initial release" 2026-08-26 RCSB # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1B0M _pdbx_chem_comp_pcm.modified_residue_id THR _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C23 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom OG1 _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #