data_A1B13 # _chem_comp.id A1B13 _chem_comp.name "(3S)-1-[(2S)-2-(thiophen-2-yl)propanoyl]piperidine-3-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H18 N2 O2 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-03-21 _chem_comp.pdbx_modified_date 2025-03-28 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 266.359 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1B13 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7I3N _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1B13 N1 N1 N 0 1 N N N N N N 11.031 13.609 17.880 5.177 -1.075 1.112 N1 A1B13 1 A1B13 C4 C1 C 0 1 N N N N N N 12.179 14.047 22.472 2.141 2.120 0.806 C4 A1B13 2 A1B13 C5 C2 C 0 1 N N N N N N 12.143 14.531 21.022 3.373 1.253 0.538 C5 A1B13 3 A1B13 C6 C3 C 0 1 N N S N N N 10.940 13.958 20.262 2.956 -0.216 0.444 C6 A1B13 4 A1B13 C7 C4 C 0 1 N N N N N N 10.889 14.500 18.845 4.174 -1.071 0.212 C7 A1B13 5 A1B13 C8 C5 C 0 1 N N N N N N 9.654 14.269 21.033 1.978 -0.391 -0.722 C8 A1B13 6 A1B13 C10 C6 C 0 1 Y N N N N N 8.604 9.823 24.882 -3.296 0.457 1.453 C10 A1B13 7 A1B13 O1 O1 O 0 1 N N N N N N 10.727 15.703 18.630 4.253 -1.757 -0.786 O1 A1B13 8 A1B13 C3 C7 C 0 1 N N N N N N 10.859 14.343 23.159 1.154 1.971 -0.356 C3 A1B13 9 A1B13 N N2 N 0 1 N N N N N N 9.747 13.749 22.400 0.859 0.544 -0.545 N A1B13 10 A1B13 C2 C8 C 0 1 N N N N N N 8.874 12.826 22.864 -0.414 0.102 -0.558 C2 A1B13 11 A1B13 O O2 O 0 1 N N N N N N 7.959 12.415 22.172 -0.650 -1.061 -0.806 O A1B13 12 A1B13 C1 C9 C 0 1 N N R N N N 9.049 12.332 24.288 -1.546 1.054 -0.263 C1 A1B13 13 A1B13 C C10 C 0 1 N N N N N N 7.796 12.651 25.103 -1.941 1.788 -1.546 C A1B13 14 A1B13 C9 C11 C 0 1 Y N N N N N 9.328 10.848 24.254 -2.729 0.281 0.259 C9 A1B13 15 A1B13 S S1 S 0 1 Y N N N N N 10.655 10.197 23.383 -3.574 -0.992 -0.613 S A1B13 16 A1B13 C12 C12 C 0 1 Y N N N N N 10.275 8.603 23.832 -4.682 -1.220 0.733 C12 A1B13 17 A1B13 C11 C13 C 0 1 Y N N N N N 9.186 8.536 24.614 -4.374 -0.372 1.715 C11 A1B13 18 A1B13 H12 H1 H 0 1 N N N N N N 11.010 13.900 16.924 5.114 -0.527 1.910 H12 A1B13 19 A1B13 H11 H2 H 0 1 N N N N N N 11.160 12.643 18.106 5.959 -1.629 0.965 H11 A1B13 20 A1B13 H7 H3 H 0 1 N N N N N N 12.990 14.563 23.007 1.664 1.798 1.732 H7 A1B13 21 A1B13 H8 H4 H 0 1 N N N N N N 12.361 12.962 22.488 2.443 3.164 0.897 H8 A1B13 22 A1B13 H9 H5 H 0 1 N N N N N N 12.079 15.629 21.014 3.835 1.560 -0.401 H9 A1B13 23 A1B13 H10 H6 H 0 1 N N N N N N 13.067 14.214 20.517 4.088 1.377 1.351 H10 A1B13 24 A1B13 H1 H7 H 0 1 N N N N N N 11.055 12.865 20.211 2.472 -0.516 1.373 H1 A1B13 25 A1B13 H13 H8 H 0 1 N N N N N N 9.505 15.358 21.068 2.487 -0.178 -1.662 H13 A1B13 26 A1B13 H14 H9 H 0 1 N N N N N N 8.801 13.798 20.522 1.603 -1.415 -0.734 H14 A1B13 27 A1B13 H15 H10 H 0 1 N N N N N N 7.724 9.980 25.488 -2.939 1.187 2.164 H15 A1B13 28 A1B13 H6 H11 H 0 1 N N N N N N 10.717 15.432 23.219 0.233 2.507 -0.124 H6 A1B13 29 A1B13 H5 H12 H 0 1 N N N N N N 10.874 13.918 24.174 1.595 2.379 -1.265 H5 A1B13 30 A1B13 H H13 H 0 1 N N N N N N 9.908 12.848 24.742 -1.225 1.778 0.486 H A1B13 31 A1B13 H2 H14 H 0 1 N N N N N N 7.927 12.291 26.134 -1.080 2.332 -1.934 H2 A1B13 32 A1B13 H3 H15 H 0 1 N N N N N N 7.632 13.739 25.112 -2.280 1.065 -2.289 H3 A1B13 33 A1B13 H4 H16 H 0 1 N N N N N N 6.927 12.153 24.649 -2.747 2.490 -1.329 H4 A1B13 34 A1B13 H17 H17 H 0 1 N N N N N N 10.846 7.740 23.523 -5.489 -1.938 0.761 H17 A1B13 35 A1B13 H16 H18 H 0 1 N N N N N N 8.788 7.610 25.002 -4.921 -0.337 2.645 H16 A1B13 36 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1B13 C C1 SING N N 1 A1B13 C1 C2 SING N N 2 A1B13 O C2 DOUB N N 3 A1B13 C2 N SING N N 4 A1B13 N C3 SING N N 5 A1B13 C3 C4 SING N N 6 A1B13 C4 C5 SING N N 7 A1B13 C5 C6 SING N N 8 A1B13 C6 C7 SING N N 9 A1B13 N1 C7 SING N N 10 A1B13 C7 O1 DOUB N N 11 A1B13 C8 C6 SING N N 12 A1B13 N C8 SING N N 13 A1B13 C9 C1 SING N N 14 A1B13 C9 C10 DOUB Y N 15 A1B13 C10 C11 SING Y N 16 A1B13 C11 C12 DOUB Y N 17 A1B13 C12 S SING Y N 18 A1B13 S C9 SING Y N 19 A1B13 N1 H12 SING N N 20 A1B13 N1 H11 SING N N 21 A1B13 C4 H7 SING N N 22 A1B13 C4 H8 SING N N 23 A1B13 C5 H9 SING N N 24 A1B13 C5 H10 SING N N 25 A1B13 C6 H1 SING N N 26 A1B13 C8 H13 SING N N 27 A1B13 C8 H14 SING N N 28 A1B13 C10 H15 SING N N 29 A1B13 C3 H6 SING N N 30 A1B13 C3 H5 SING N N 31 A1B13 C1 H SING N N 32 A1B13 C H2 SING N N 33 A1B13 C H3 SING N N 34 A1B13 C H4 SING N N 35 A1B13 C12 H17 SING N N 36 A1B13 C11 H16 SING N N 37 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1B13 SMILES ACDLabs 14.52 "O=C(C(C)c1cccs1)N1CCCC(C1)C(N)=O" A1B13 InChI InChI 1.06 "InChI=1S/C13H18N2O2S/c1-9(11-5-3-7-18-11)13(17)15-6-2-4-10(8-15)12(14)16/h3,5,7,9-10H,2,4,6,8H2,1H3,(H2,14,16)/t9-,10+/m1/s1" A1B13 InChIKey InChI 1.06 JQNFTWVJWFLFOK-ZJUUUORDSA-N A1B13 SMILES_CANONICAL CACTVS 3.385 "C[C@H](C(=O)N1CCC[C@@H](C1)C(N)=O)c2sccc2" A1B13 SMILES CACTVS 3.385 "C[CH](C(=O)N1CCC[CH](C1)C(N)=O)c2sccc2" A1B13 SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "C[C@@H](c1cccs1)C(=O)N2CCC[C@@H](C2)C(=O)N" A1B13 SMILES "OpenEye OEToolkits" 3.1.0.0 "CC(c1cccs1)C(=O)N2CCCC(C2)C(=O)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1B13 "SYSTEMATIC NAME" ACDLabs 14.52 "(3S)-1-[(2S)-2-(thiophen-2-yl)propanoyl]piperidine-3-carboxamide" A1B13 "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "(3~{S})-1-[(2~{R})-2-thiophen-2-ylpropanoyl]piperidine-3-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1B13 "Create component" 2025-03-21 RCSB A1B13 "Initial release" 2025-04-02 RCSB #