data_A1B2M # _chem_comp.id A1B2M _chem_comp.name "(3S)-N~1~-(3,4-dihydro-2H-1-benzothiopyran-8-yl)piperidine-1,3-dicarboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C16 H21 N3 O2 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-03-21 _chem_comp.pdbx_modified_date 2025-03-28 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 319.422 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1B2M _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7I48 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1B2M N1 N1 N 0 1 N N N N N N 25.350 14.282 10.592 1.843 0.312 -0.430 N1 A1B2M 1 A1B2M C4 C1 C 0 1 N N N N N N 24.187 14.857 9.890 1.781 1.762 -0.204 C4 A1B2M 2 A1B2M C5 C2 C 0 1 N N N N N N 25.927 13.096 10.245 0.724 -0.438 -0.393 C5 A1B2M 3 A1B2M C6 C3 C 0 1 Y N N N N N 25.957 11.278 8.671 -1.597 -0.674 0.088 C6 A1B2M 4 A1B2M C7 C4 C 0 1 Y N N N N N 25.426 10.091 9.167 -1.463 -2.037 0.278 C7 A1B2M 5 A1B2M C8 C5 C 0 1 Y N N N N N 25.994 8.888 8.783 -2.596 -2.818 0.416 C8 A1B2M 6 A1B2M C10 C6 C 0 1 Y N N N N N 27.622 10.032 7.403 -3.996 -0.868 0.154 C10 A1B2M 7 A1B2M C13 C7 C 0 1 N N N N N N 28.972 11.155 5.585 -5.533 1.120 0.407 C13 A1B2M 8 A1B2M C15 C8 C 0 1 N N N N N N 25.475 14.715 11.985 3.149 -0.305 -0.704 C15 A1B2M 9 A1B2M O1 O1 O 0 1 N N N N N N 26.805 12.573 10.922 0.776 -1.622 -0.665 O1 A1B2M 10 A1B2M C3 C9 C 0 1 N N N N N N 22.880 14.560 10.627 2.765 2.131 0.910 C3 A1B2M 11 A1B2M C2 C10 C 0 1 N N N N N N 22.997 14.933 12.107 4.158 1.611 0.547 C2 A1B2M 12 A1B2M C1 C11 C 0 1 N N S N N N 24.230 14.282 12.761 4.121 0.082 0.415 C1 A1B2M 13 A1B2M C C12 C 0 1 N N N N N N 24.335 14.640 14.234 5.501 -0.428 0.090 C A1B2M 14 A1B2M O O2 O 0 1 N N N N N N 24.769 15.737 14.595 6.424 0.350 -0.025 O A1B2M 15 A1B2M N N2 N 0 1 N N N N N N 23.931 13.709 15.085 5.709 -1.750 -0.073 N A1B2M 16 A1B2M N2 N3 N 0 1 N N N N N N 25.472 12.524 9.112 -0.453 0.125 -0.053 N2 A1B2M 17 A1B2M C11 C13 C 0 1 Y N N N N N 27.043 11.255 7.782 -2.867 -0.085 0.029 C11 A1B2M 18 A1B2M S S1 S 0 1 N N N N N N 27.544 12.834 7.179 -2.952 1.664 -0.188 S A1B2M 19 A1B2M C12 C14 C 0 1 N N N N N N 29.091 12.461 6.328 -4.701 1.930 -0.597 C12 A1B2M 20 A1B2M C14 C15 C 0 1 N N N N N N 28.816 9.953 6.487 -5.405 -0.357 0.078 C14 A1B2M 21 A1B2M C9 C16 C 0 1 Y N N N N N 27.077 8.862 7.923 -3.844 -2.240 0.358 C9 A1B2M 22 A1B2M H8 H1 H 0 1 N N N N N N 24.132 14.427 8.879 2.053 2.287 -1.120 H8 A1B2M 23 A1B2M H7 H2 H 0 1 N N N N N N 24.317 15.947 9.818 0.770 2.043 0.091 H7 A1B2M 24 A1B2M H10 H3 H 0 1 N N N N N N 24.583 10.108 9.842 -0.482 -2.487 0.317 H10 A1B2M 25 A1B2M H11 H4 H 0 1 N N N N N N 25.587 7.961 9.159 -2.501 -3.883 0.570 H11 A1B2M 26 A1B2M H16 H5 H 0 1 N N N N N N 28.094 11.210 4.925 -5.165 1.302 1.417 H16 A1B2M 27 A1B2M H15 H6 H 0 1 N N N N N N 29.879 11.018 4.978 -6.579 1.421 0.341 H15 A1B2M 28 A1B2M H19 H7 H 0 1 N N N N N N 26.367 14.255 12.435 3.041 -1.389 -0.735 H19 A1B2M 29 A1B2M H20 H8 H 0 1 N N N N N N 25.569 15.810 12.023 3.528 0.053 -1.661 H20 A1B2M 30 A1B2M H6 H9 H 0 1 N N N N N N 22.653 13.487 10.542 2.799 3.214 1.022 H6 A1B2M 31 A1B2M H5 H10 H 0 1 N N N N N N 22.067 15.144 10.171 2.440 1.679 1.847 H5 A1B2M 32 A1B2M H4 H11 H 0 1 N N N N N N 22.093 14.593 12.633 4.472 2.045 -0.402 H4 A1B2M 33 A1B2M H3 H12 H 0 1 N N N N N N 23.083 16.026 12.194 4.865 1.893 1.327 H3 A1B2M 34 A1B2M H H13 H 0 1 N N N N N N 24.130 13.190 12.674 3.782 -0.356 1.354 H A1B2M 35 A1B2M H2 H14 H 0 1 N N N N N N 23.970 13.880 16.069 4.971 -2.372 0.019 H2 A1B2M 36 A1B2M H1 H15 H 0 1 N N N N N N 23.587 12.835 14.743 6.598 -2.078 -0.283 H1 A1B2M 37 A1B2M H9 H16 H 0 1 N N N N N N 24.774 12.995 8.573 -0.508 1.082 0.094 H9 A1B2M 38 A1B2M H14 H17 H 0 1 N N N N N N 29.317 13.267 5.614 -4.902 1.582 -1.610 H14 A1B2M 39 A1B2M H13 H18 H 0 1 N N N N N N 29.903 12.387 7.066 -4.945 2.989 -0.512 H13 A1B2M 40 A1B2M H18 H19 H 0 1 N N N N N N 28.711 9.058 5.857 -5.782 -0.523 -0.931 H18 A1B2M 41 A1B2M H17 H20 H 0 1 N N N N N N 29.722 9.863 7.105 -6.020 -0.925 0.776 H17 A1B2M 42 A1B2M H12 H21 H 0 1 N N N N N N 27.510 7.911 7.649 -4.722 -2.860 0.467 H12 A1B2M 43 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1B2M N C SING N N 1 A1B2M O C DOUB N N 2 A1B2M C C1 SING N N 3 A1B2M C1 C2 SING N N 4 A1B2M C2 C3 SING N N 5 A1B2M C3 C4 SING N N 6 A1B2M C4 N1 SING N N 7 A1B2M N1 C5 SING N N 8 A1B2M C5 O1 DOUB N N 9 A1B2M N2 C5 SING N N 10 A1B2M C6 N2 SING N N 11 A1B2M C6 C7 DOUB Y N 12 A1B2M C7 C8 SING Y N 13 A1B2M C8 C9 DOUB Y N 14 A1B2M C9 C10 SING Y N 15 A1B2M C10 C11 DOUB Y N 16 A1B2M C11 C6 SING Y N 17 A1B2M S C11 SING N N 18 A1B2M C12 S SING N N 19 A1B2M C13 C12 SING N N 20 A1B2M C14 C13 SING N N 21 A1B2M C10 C14 SING N N 22 A1B2M C15 N1 SING N N 23 A1B2M C1 C15 SING N N 24 A1B2M C4 H8 SING N N 25 A1B2M C4 H7 SING N N 26 A1B2M C7 H10 SING N N 27 A1B2M C8 H11 SING N N 28 A1B2M C13 H16 SING N N 29 A1B2M C13 H15 SING N N 30 A1B2M C15 H19 SING N N 31 A1B2M C15 H20 SING N N 32 A1B2M C3 H6 SING N N 33 A1B2M C3 H5 SING N N 34 A1B2M C2 H4 SING N N 35 A1B2M C2 H3 SING N N 36 A1B2M C1 H SING N N 37 A1B2M N H2 SING N N 38 A1B2M N H1 SING N N 39 A1B2M N2 H9 SING N N 40 A1B2M C12 H14 SING N N 41 A1B2M C12 H13 SING N N 42 A1B2M C14 H18 SING N N 43 A1B2M C14 H17 SING N N 44 A1B2M C9 H12 SING N N 45 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1B2M SMILES ACDLabs 14.52 "NC(=O)C1CCCN(C1)C(=O)Nc1cccc2CCCSc12" A1B2M InChI InChI 1.06 "InChI=1S/C16H21N3O2S/c17-15(20)12-5-2-8-19(10-12)16(21)18-13-7-1-4-11-6-3-9-22-14(11)13/h1,4,7,12H,2-3,5-6,8-10H2,(H2,17,20)(H,18,21)/t12-/m0/s1" A1B2M InChIKey InChI 1.06 OARBYSRMZQWEJK-LBPRGKRZSA-N A1B2M SMILES_CANONICAL CACTVS 3.385 "NC(=O)[C@H]1CCCN(C1)C(=O)Nc2cccc3CCCSc23" A1B2M SMILES CACTVS 3.385 "NC(=O)[CH]1CCCN(C1)C(=O)Nc2cccc3CCCSc23" A1B2M SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "c1cc2c(c(c1)NC(=O)N3CCC[C@@H](C3)C(=O)N)SCCC2" A1B2M SMILES "OpenEye OEToolkits" 3.1.0.0 "c1cc2c(c(c1)NC(=O)N3CCCC(C3)C(=O)N)SCCC2" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1B2M "SYSTEMATIC NAME" ACDLabs 14.52 "(3S)-N~1~-(3,4-dihydro-2H-1-benzothiopyran-8-yl)piperidine-1,3-dicarboxamide" A1B2M "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "(3~{S})-~{N}1-(3,4-dihydro-2~{H}-thiochromen-8-yl)piperidine-1,3-dicarboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1B2M "Create component" 2025-03-21 RCSB A1B2M "Initial release" 2025-04-02 RCSB #