data_A1B2Q # _chem_comp.id A1B2Q _chem_comp.name "(3S)-1-{[2-(methylsulfanyl)phenyl]methyl}-6-oxopiperidine-3-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C14 H18 N2 O2 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-03-21 _chem_comp.pdbx_modified_date 2025-03-28 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 278.370 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1B2Q _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7I4C _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1B2Q N1 N1 N 0 1 N N N N N N 12.285 14.855 17.805 4.371 1.210 1.274 N1 A1B2Q 1 A1B2Q C4 C1 C 0 1 Y N N N N N 11.257 10.651 22.978 -3.638 -1.432 0.938 C4 A1B2Q 2 A1B2Q C5 C2 C 0 1 Y N N N N N 11.436 12.016 22.815 -2.627 -1.670 0.024 C5 A1B2Q 3 A1B2Q C6 C3 C 0 1 Y N N N N N 10.635 12.935 23.491 -1.886 -0.619 -0.478 C6 A1B2Q 4 A1B2Q C7 C4 C 0 1 N N N N N N 10.802 14.422 23.264 -0.785 -0.880 -1.473 C7 A1B2Q 5 A1B2Q C8 C5 C 0 1 N N N N N N 11.344 14.933 20.937 1.341 0.181 -0.681 C8 A1B2Q 6 A1B2Q C10 C6 C 0 1 N N N N N N 11.900 15.830 18.622 3.371 1.143 0.372 C10 A1B2Q 7 A1B2Q C13 C7 C 0 1 N N N N N N 13.131 14.868 22.731 0.806 -2.186 -0.241 C13 A1B2Q 8 A1B2Q O1 O1 O 0 1 N N N N N N 13.431 14.795 23.909 0.039 -3.110 -0.411 O1 A1B2Q 9 A1B2Q C12 C8 C 0 1 N N N N N N 14.197 15.110 21.687 2.059 -2.438 0.548 C12 A1B2Q 10 A1B2Q C11 C9 C 0 1 N N N N N N 13.730 15.089 20.229 3.073 -1.322 0.286 C11 A1B2Q 11 A1B2Q C9 C10 C 0 1 N N R N N N 12.334 15.717 20.075 2.361 0.027 0.448 C9 A1B2Q 12 A1B2Q O O2 O 0 1 N N N N N N 11.180 16.761 18.251 3.284 1.982 -0.500 O A1B2Q 13 A1B2Q N N2 N 0 1 N N N N N N 11.848 14.757 22.303 0.493 -1.001 -0.766 N A1B2Q 14 A1B2Q C1 C11 C 0 1 Y N N N N N 9.651 12.442 24.361 -2.158 0.680 -0.065 C1 A1B2Q 15 A1B2Q S S1 S 0 1 N N N N N N 8.664 13.617 25.243 -1.211 2.024 -0.698 S A1B2Q 16 A1B2Q C C12 C 0 1 N N N N N N 7.579 12.589 26.246 -1.935 3.463 0.136 C A1B2Q 17 A1B2Q C3 C13 C 0 1 Y N N N N N 10.296 10.182 23.831 -3.915 -0.140 1.346 C3 A1B2Q 18 A1B2Q C2 C14 C 0 1 Y N N N N N 9.489 11.068 24.527 -3.175 0.915 0.853 C2 A1B2Q 19 A1B2Q H13 H1 H 0 1 N N N N N N 11.991 14.858 16.849 4.440 0.539 1.971 H13 A1B2Q 20 A1B2Q H12 H2 H 0 1 N N N N N N 12.869 14.118 18.146 5.023 1.926 1.223 H12 A1B2Q 21 A1B2Q H6 H3 H 0 1 N N N N N N 11.877 9.957 22.431 -4.216 -2.256 1.329 H6 A1B2Q 22 A1B2Q H7 H4 H 0 1 N N N N N N 12.210 12.374 22.152 -2.417 -2.680 -0.296 H7 A1B2Q 23 A1B2Q H9 H5 H 0 1 N N N N N N 9.848 14.826 22.893 -0.992 -1.805 -2.010 H9 A1B2Q 24 A1B2Q H8 H6 H 0 1 N N N N N N 11.051 14.894 24.226 -0.732 -0.053 -2.181 H8 A1B2Q 25 A1B2Q H11 H7 H 0 1 N N N N N N 11.181 13.943 20.485 0.721 1.056 -0.489 H11 A1B2Q 26 A1B2Q H10 H8 H 0 1 N N N N N N 10.391 15.480 20.975 1.867 0.312 -1.627 H10 A1B2Q 27 A1B2Q H17 H9 H 0 1 N N N N N N 14.965 14.332 21.805 1.818 -2.466 1.611 H17 A1B2Q 28 A1B2Q H16 H10 H 0 1 N N N N N N 14.641 16.097 21.883 2.489 -3.394 0.249 H16 A1B2Q 29 A1B2Q H15 H11 H 0 1 N N N N N N 13.693 14.046 19.880 3.891 -1.394 1.003 H15 A1B2Q 30 A1B2Q H14 H12 H 0 1 N N N N N N 14.446 15.656 19.616 3.464 -1.412 -0.727 H14 A1B2Q 31 A1B2Q H H13 H 0 1 N N N N N N 12.388 16.737 20.483 1.850 0.060 1.410 H A1B2Q 32 A1B2Q H3 H14 H 0 1 N N N N N N 6.914 13.230 26.843 -1.419 4.367 -0.185 H3 A1B2Q 33 A1B2Q H2 H15 H 0 1 N N N N N N 6.975 11.944 25.590 -2.992 3.537 -0.121 H2 A1B2Q 34 A1B2Q H1 H16 H 0 1 N N N N N N 8.185 11.964 26.918 -1.831 3.348 1.215 H1 A1B2Q 35 A1B2Q H5 H17 H 0 1 N N N N N N 10.166 9.118 23.962 -4.706 0.042 2.059 H5 A1B2Q 36 A1B2Q H4 H18 H 0 1 N N N N N N 8.732 10.692 25.200 -3.388 1.924 1.176 H4 A1B2Q 37 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1B2Q C S SING N N 1 A1B2Q S C1 SING N N 2 A1B2Q C1 C2 DOUB Y N 3 A1B2Q C2 C3 SING Y N 4 A1B2Q C3 C4 DOUB Y N 5 A1B2Q C4 C5 SING Y N 6 A1B2Q C5 C6 DOUB Y N 7 A1B2Q C1 C6 SING Y N 8 A1B2Q C6 C7 SING N N 9 A1B2Q C7 N SING N N 10 A1B2Q N C8 SING N N 11 A1B2Q C8 C9 SING N N 12 A1B2Q C10 C9 SING N N 13 A1B2Q N1 C10 SING N N 14 A1B2Q O C10 DOUB N N 15 A1B2Q C9 C11 SING N N 16 A1B2Q C11 C12 SING N N 17 A1B2Q C12 C13 SING N N 18 A1B2Q N C13 SING N N 19 A1B2Q C13 O1 DOUB N N 20 A1B2Q N1 H13 SING N N 21 A1B2Q N1 H12 SING N N 22 A1B2Q C4 H6 SING N N 23 A1B2Q C5 H7 SING N N 24 A1B2Q C7 H9 SING N N 25 A1B2Q C7 H8 SING N N 26 A1B2Q C8 H11 SING N N 27 A1B2Q C8 H10 SING N N 28 A1B2Q C12 H17 SING N N 29 A1B2Q C12 H16 SING N N 30 A1B2Q C11 H15 SING N N 31 A1B2Q C11 H14 SING N N 32 A1B2Q C9 H SING N N 33 A1B2Q C H3 SING N N 34 A1B2Q C H2 SING N N 35 A1B2Q C H1 SING N N 36 A1B2Q C3 H5 SING N N 37 A1B2Q C2 H4 SING N N 38 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1B2Q SMILES ACDLabs 14.52 "NC(=O)C1CCC(=O)N(Cc2ccccc2SC)C1" A1B2Q InChI InChI 1.06 "InChI=1S/C14H18N2O2S/c1-19-12-5-3-2-4-10(12)8-16-9-11(14(15)18)6-7-13(16)17/h2-5,11H,6-9H2,1H3,(H2,15,18)/t11-/m0/s1" A1B2Q InChIKey InChI 1.06 RLHAKIZJEMHKDK-NSHDSACASA-N A1B2Q SMILES_CANONICAL CACTVS 3.385 "CSc1ccccc1CN2C[C@@H](CCC2=O)C(N)=O" A1B2Q SMILES CACTVS 3.385 "CSc1ccccc1CN2C[CH](CCC2=O)C(N)=O" A1B2Q SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "CSc1ccccc1CN2C[C@@H](CCC2=O)C(=O)N" A1B2Q SMILES "OpenEye OEToolkits" 3.1.0.0 "CSc1ccccc1CN2CC(CCC2=O)C(=O)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1B2Q "SYSTEMATIC NAME" ACDLabs 14.52 "(3S)-1-{[2-(methylsulfanyl)phenyl]methyl}-6-oxopiperidine-3-carboxamide" A1B2Q "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "(3~{R})-1-[(2-methylsulfanylphenyl)methyl]-6-oxidanylidene-piperidine-3-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1B2Q "Create component" 2025-03-21 RCSB A1B2Q "Initial release" 2025-04-02 RCSB #