data_A1B2R # _chem_comp.id A1B2R _chem_comp.name "(3S)-1-{[2-(methylsulfanyl)phenyl]methyl}-6-oxopiperidine-3-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C14 H18 N2 O2 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-03-21 _chem_comp.pdbx_modified_date 2025-03-28 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 278.370 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1B2R _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7I4D _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1B2R N1 N1 N 0 1 N N N N N N 11.529 13.505 17.846 4.813 -0.919 -0.553 N1 A1B2R 1 A1B2R C4 C1 C 0 1 Y N N N N N 10.355 9.541 23.127 -3.783 1.375 -0.754 C4 A1B2R 2 A1B2R C5 C2 C 0 1 Y N N N N N 10.399 10.908 22.911 -2.733 1.624 0.111 C5 A1B2R 3 A1B2R C6 C3 C 0 1 Y N N N N N 9.552 11.775 23.603 -1.919 0.590 0.528 C6 A1B2R 4 A1B2R C7 C4 C 0 1 N N N N N N 9.663 13.266 23.368 -0.775 0.863 1.470 C7 A1B2R 5 A1B2R C8 C5 C 0 1 N N N N N N 10.464 13.837 21.129 1.311 -0.195 0.575 C8 A1B2R 6 A1B2R C10 C6 C 0 1 N N N N N N 11.302 14.357 18.832 3.524 -1.031 -0.174 C10 A1B2R 7 A1B2R C13 C7 C 0 1 N N N N N N 12.003 13.929 23.135 0.758 2.174 0.171 C13 A1B2R 8 A1B2R O1 O1 O 0 1 N N N N N N 12.176 13.799 24.336 -0.040 3.077 0.312 O1 A1B2R 9 A1B2R C12 C8 C 0 1 N N N N N N 13.133 14.413 22.263 2.020 2.454 -0.594 C12 A1B2R 10 A1B2R C11 C9 C 0 1 N N N N N N 12.713 14.864 20.862 2.665 1.137 -1.033 C11 A1B2R 11 A1B2R C9 C10 C 0 1 N N S N N N 11.702 13.896 20.224 2.734 0.203 0.181 C9 A1B2R 12 A1B2R O O2 O 0 1 N N N N N N 10.776 15.460 18.650 3.001 -2.123 -0.118 O A1B2R 13 A1B2R N N2 N 0 1 N N N N N N 10.810 13.665 22.546 0.469 0.987 0.705 N A1B2R 14 A1B2R C1 C11 C 0 1 Y N N N N N 8.648 11.225 24.526 -2.157 -0.704 0.078 C1 A1B2R 15 A1B2R S S1 S 0 1 N N N N N N 7.607 12.335 25.429 -1.117 -2.026 0.603 S A1B2R 16 A1B2R C C12 C 0 1 N N N N N N 6.614 11.255 26.473 -1.825 -3.464 -0.247 C A1B2R 17 A1B2R C3 C13 C 0 1 Y N N N N N 9.460 9.013 24.027 -4.026 0.088 -1.199 C3 A1B2R 18 A1B2R C2 C14 C 0 1 Y N N N N N 8.605 9.847 24.731 -3.213 -0.951 -0.790 C2 A1B2R 19 A1B2R H13 H1 H 0 1 N N N N N N 11.272 13.744 16.910 5.232 -0.046 -0.598 H13 A1B2R 20 A1B2R H12 H2 H 0 1 N N N N N N 11.957 12.622 18.037 5.323 -1.714 -0.778 H12 A1B2R 21 A1B2R H6 H3 H 0 1 N N N N N N 11.025 8.888 22.587 -4.418 2.186 -1.079 H6 A1B2R 22 A1B2R H7 H4 H 0 1 N N N N N N 11.101 11.310 22.195 -2.548 2.630 0.459 H7 A1B2R 23 A1B2R H9 H5 H 0 1 N N N N N N 8.745 13.605 22.865 -0.963 1.790 2.010 H9 A1B2R 24 A1B2R H8 H6 H 0 1 N N N N N N 9.751 13.763 24.345 -0.684 0.041 2.179 H8 A1B2R 25 A1B2R H11 H7 H 0 1 N N N N N N 9.837 12.990 20.814 0.896 -0.851 -0.191 H11 A1B2R 26 A1B2R H10 H8 H 0 1 N N N N N N 9.899 14.774 21.015 1.335 -0.724 1.528 H10 A1B2R 27 A1B2R H17 H9 H 0 1 N N N N N N 13.858 13.593 22.156 1.785 3.052 -1.474 H17 A1B2R 28 A1B2R H16 H10 H 0 1 N N N N N N 13.614 15.264 22.767 2.715 3.002 0.041 H16 A1B2R 29 A1B2R H15 H11 H 0 1 N N N N N N 13.607 14.916 20.223 2.064 0.676 -1.816 H15 A1B2R 30 A1B2R H14 H12 H 0 1 N N N N N N 12.254 15.861 20.933 3.671 1.328 -1.407 H14 A1B2R 31 A1B2R H H13 H 0 1 N N N N N N 12.152 12.894 20.161 3.214 0.717 1.015 H A1B2R 32 A1B2R H3 H14 H 0 1 N N N N N N 5.926 11.862 27.080 -1.252 -4.355 0.008 H3 A1B2R 33 A1B2R H2 H15 H 0 1 N N N N N N 6.034 10.566 25.841 -2.861 -3.596 0.065 H2 A1B2R 34 A1B2R H1 H16 H 0 1 N N N N N N 7.275 10.677 27.135 -1.788 -3.304 -1.324 H1 A1B2R 35 A1B2R H5 H17 H 0 1 N N N N N N 9.423 7.945 24.186 -4.847 -0.103 -1.873 H5 A1B2R 36 A1B2R H4 H18 H 0 1 N N N N N N 7.905 9.429 25.439 -3.401 -1.955 -1.141 H4 A1B2R 37 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1B2R C S SING N N 1 A1B2R S C1 SING N N 2 A1B2R C1 C2 DOUB Y N 3 A1B2R C2 C3 SING Y N 4 A1B2R C3 C4 DOUB Y N 5 A1B2R C4 C5 SING Y N 6 A1B2R C5 C6 DOUB Y N 7 A1B2R C1 C6 SING Y N 8 A1B2R C6 C7 SING N N 9 A1B2R C7 N SING N N 10 A1B2R N C8 SING N N 11 A1B2R C8 C9 SING N N 12 A1B2R C10 C9 SING N N 13 A1B2R N1 C10 SING N N 14 A1B2R O C10 DOUB N N 15 A1B2R C9 C11 SING N N 16 A1B2R C11 C12 SING N N 17 A1B2R C12 C13 SING N N 18 A1B2R N C13 SING N N 19 A1B2R C13 O1 DOUB N N 20 A1B2R N1 H13 SING N N 21 A1B2R N1 H12 SING N N 22 A1B2R C4 H6 SING N N 23 A1B2R C5 H7 SING N N 24 A1B2R C7 H9 SING N N 25 A1B2R C7 H8 SING N N 26 A1B2R C8 H11 SING N N 27 A1B2R C8 H10 SING N N 28 A1B2R C12 H17 SING N N 29 A1B2R C12 H16 SING N N 30 A1B2R C11 H15 SING N N 31 A1B2R C11 H14 SING N N 32 A1B2R C9 H SING N N 33 A1B2R C H3 SING N N 34 A1B2R C H2 SING N N 35 A1B2R C H1 SING N N 36 A1B2R C3 H5 SING N N 37 A1B2R C2 H4 SING N N 38 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1B2R SMILES ACDLabs 14.52 "NC(=O)C1CCC(=O)N(Cc2ccccc2SC)C1" A1B2R InChI InChI 1.06 "InChI=1S/C14H18N2O2S/c1-19-12-5-3-2-4-10(12)8-16-9-11(14(15)18)6-7-13(16)17/h2-5,11H,6-9H2,1H3,(H2,15,18)/t11-/m0/s1" A1B2R InChIKey InChI 1.06 RLHAKIZJEMHKDK-NSHDSACASA-N A1B2R SMILES_CANONICAL CACTVS 3.385 "CSc1ccccc1CN2C[C@H](CCC2=O)C(N)=O" A1B2R SMILES CACTVS 3.385 "CSc1ccccc1CN2C[CH](CCC2=O)C(N)=O" A1B2R SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "CSc1ccccc1CN2C[C@H](CCC2=O)C(=O)N" A1B2R SMILES "OpenEye OEToolkits" 3.1.0.0 "CSc1ccccc1CN2CC(CCC2=O)C(=O)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1B2R "SYSTEMATIC NAME" ACDLabs 14.52 "(3S)-1-{[2-(methylsulfanyl)phenyl]methyl}-6-oxopiperidine-3-carboxamide" A1B2R "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "(3~{S})-1-[(2-methylsulfanylphenyl)methyl]-6-oxidanylidene-piperidine-3-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1B2R "Create component" 2025-03-21 RCSB A1B2R "Initial release" 2025-04-02 RCSB #