data_A1B2X # _chem_comp.id A1B2X _chem_comp.name "(3S)-1-{[3-(methylsulfanyl)phenyl]methyl}-6-oxopiperidine-3-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C14 H18 N2 O2 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-03-21 _chem_comp.pdbx_modified_date 2025-03-28 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 278.370 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1B2X _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7I4J _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1B2X N1 N1 N 0 1 N N N N N N 12.346 14.638 17.596 4.782 -2.249 0.472 N1 A1B2X 1 A1B2X C4 C1 C 0 1 Y N N N N N 11.113 11.756 22.652 -1.702 2.129 0.004 C4 A1B2X 2 A1B2X C5 C2 C 0 1 Y N N N N N 10.356 12.715 23.313 -1.164 1.102 -0.751 C5 A1B2X 3 A1B2X C6 C3 C 0 1 N N N N N N 10.626 14.192 23.123 0.115 1.322 -1.517 C6 A1B2X 4 A1B2X C7 C4 C 0 1 N N N N N N 11.191 14.634 20.769 1.738 -0.406 -0.709 C7 A1B2X 5 A1B2X C8 C5 C 0 1 N N R N N N 12.202 15.383 19.899 3.165 -0.489 -0.166 C8 A1B2X 6 A1B2X C10 C6 C 0 1 N N N N N N 13.567 14.708 20.074 3.217 0.221 1.192 C10 A1B2X 7 A1B2X C13 C7 C 0 1 Y N N N N N 9.367 12.289 24.193 -1.798 -0.124 -0.803 C13 A1B2X 8 A1B2X O1 O1 O 0 1 N N N N N N 13.288 14.432 23.736 1.281 3.027 0.069 O1 A1B2X 9 A1B2X C12 C8 C 0 1 N N N N N N 12.972 14.565 22.565 1.792 1.928 0.088 C12 A1B2X 10 A1B2X C11 C9 C 0 1 N N N N N N 14.030 14.841 21.529 2.993 1.718 0.965 C11 A1B2X 11 A1B2X C9 C10 C 0 1 N N N N N N 11.791 15.497 18.439 3.558 -1.934 0.004 C9 A1B2X 12 A1B2X O O2 O 0 1 N N N N N N 11.001 16.371 18.076 2.773 -2.813 -0.282 O A1B2X 13 A1B2X N N2 N 0 1 N N N N N N 11.681 14.482 22.145 1.257 0.970 -0.670 N A1B2X 14 A1B2X C3 C11 C 0 1 Y N N N N N 10.887 10.405 22.864 -2.873 1.930 0.712 C3 A1B2X 15 A1B2X C2 C12 C 0 1 Y N N N N N 9.918 9.991 23.757 -3.509 0.706 0.669 C2 A1B2X 16 A1B2X C1 C13 C 0 1 Y N N N N N 9.156 10.932 24.433 -2.977 -0.325 -0.097 C1 A1B2X 17 A1B2X S S1 S 0 1 N N N N N N 7.972 10.431 25.644 -3.785 -1.890 -0.154 S A1B2X 18 A1B2X C C14 C 0 1 N N N N N N 7.228 11.979 26.174 -5.223 -1.647 0.924 C A1B2X 19 A1B2X H12 H1 H 0 1 N N N N N N 12.129 14.683 16.621 5.410 -1.546 0.701 H12 A1B2X 20 A1B2X H11 H2 H 0 1 N N N N N N 12.982 13.945 17.935 5.033 -3.179 0.586 H11 A1B2X 21 A1B2X H6 H3 H 0 1 N N N N N N 11.886 12.067 21.965 -1.205 3.087 0.043 H6 A1B2X 22 A1B2X H8 H4 H 0 1 N N N N N N 9.697 14.673 22.783 0.117 0.695 -2.408 H8 A1B2X 23 A1B2X H7 H5 H 0 1 N N N N N N 10.926 14.617 24.092 0.188 2.369 -1.809 H7 A1B2X 24 A1B2X H10 H6 H 0 1 N N N N N N 11.017 13.637 20.338 1.723 -0.764 -1.738 H10 A1B2X 25 A1B2X H9 H7 H 0 1 N N N N N N 10.246 15.197 20.785 1.084 -1.030 -0.100 H9 A1B2X 26 A1B2X H H8 H 0 1 N N N N N N 12.287 16.404 20.299 3.850 -0.001 -0.860 H A1B2X 27 A1B2X H14 H9 H 0 1 N N N N N N 13.483 13.643 19.813 2.434 -0.172 1.842 H14 A1B2X 28 A1B2X H13 H10 H 0 1 N N N N N N 14.301 15.191 19.412 4.191 0.061 1.654 H13 A1B2X 29 A1B2X H17 H11 H 0 1 N N N N N N 8.753 13.020 24.698 -1.377 -0.925 -1.392 H17 A1B2X 30 A1B2X H16 H12 H 0 1 N N N N N N 14.857 14.133 21.689 2.832 2.210 1.924 H16 A1B2X 31 A1B2X H15 H13 H 0 1 N N N N N N 14.393 15.869 21.678 3.872 2.146 0.483 H15 A1B2X 32 A1B2X H5 H14 H 0 1 N N N N N N 11.472 9.672 22.328 -3.291 2.734 1.301 H5 A1B2X 33 A1B2X H4 H15 H 0 1 N N N N N N 9.754 8.937 23.928 -4.423 0.551 1.224 H4 A1B2X 34 A1B2X H2 H16 H 0 1 N N N N N N 6.465 11.776 26.940 -4.885 -1.387 1.927 H2 A1B2X 35 A1B2X H1 H17 H 0 1 N N N N N N 8.005 12.634 26.595 -5.842 -0.841 0.529 H1 A1B2X 36 A1B2X H3 H18 H 0 1 N N N N N N 6.759 12.475 25.311 -5.807 -2.567 0.965 H3 A1B2X 37 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1B2X C S SING N N 1 A1B2X S C1 SING N N 2 A1B2X C1 C2 SING Y N 3 A1B2X C2 C3 DOUB Y N 4 A1B2X C3 C4 SING Y N 5 A1B2X C4 C5 DOUB Y N 6 A1B2X C5 C6 SING N N 7 A1B2X C6 N SING N N 8 A1B2X N C7 SING N N 9 A1B2X C7 C8 SING N N 10 A1B2X C9 C8 SING N N 11 A1B2X N1 C9 SING N N 12 A1B2X O C9 DOUB N N 13 A1B2X C8 C10 SING N N 14 A1B2X C10 C11 SING N N 15 A1B2X C11 C12 SING N N 16 A1B2X N C12 SING N N 17 A1B2X C12 O1 DOUB N N 18 A1B2X C13 C5 SING Y N 19 A1B2X C1 C13 DOUB Y N 20 A1B2X N1 H12 SING N N 21 A1B2X N1 H11 SING N N 22 A1B2X C4 H6 SING N N 23 A1B2X C6 H8 SING N N 24 A1B2X C6 H7 SING N N 25 A1B2X C7 H10 SING N N 26 A1B2X C7 H9 SING N N 27 A1B2X C8 H SING N N 28 A1B2X C10 H14 SING N N 29 A1B2X C10 H13 SING N N 30 A1B2X C13 H17 SING N N 31 A1B2X C11 H16 SING N N 32 A1B2X C11 H15 SING N N 33 A1B2X C3 H5 SING N N 34 A1B2X C2 H4 SING N N 35 A1B2X C H2 SING N N 36 A1B2X C H1 SING N N 37 A1B2X C H3 SING N N 38 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1B2X SMILES ACDLabs 14.52 "NC(=O)C1CCC(=O)N(Cc2cc(SC)ccc2)C1" A1B2X InChI InChI 1.06 "InChI=1S/C14H18N2O2S/c1-19-12-4-2-3-10(7-12)8-16-9-11(14(15)18)5-6-13(16)17/h2-4,7,11H,5-6,8-9H2,1H3,(H2,15,18)/t11-/m0/s1" A1B2X InChIKey InChI 1.06 ZJIYWYXPZXQCRR-NSHDSACASA-N A1B2X SMILES_CANONICAL CACTVS 3.385 "CSc1cccc(CN2C[C@@H](CCC2=O)C(N)=O)c1" A1B2X SMILES CACTVS 3.385 "CSc1cccc(CN2C[CH](CCC2=O)C(N)=O)c1" A1B2X SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "CSc1cccc(c1)CN2C[C@@H](CCC2=O)C(=O)N" A1B2X SMILES "OpenEye OEToolkits" 3.1.0.0 "CSc1cccc(c1)CN2CC(CCC2=O)C(=O)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1B2X "SYSTEMATIC NAME" ACDLabs 14.52 "(3S)-1-{[3-(methylsulfanyl)phenyl]methyl}-6-oxopiperidine-3-carboxamide" A1B2X "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "(3~{R})-1-[(3-methylsulfanylphenyl)methyl]-6-oxidanylidene-piperidine-3-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1B2X "Create component" 2025-03-21 RCSB A1B2X "Initial release" 2025-04-02 RCSB #