data_A1B2Y # _chem_comp.id A1B2Y _chem_comp.name "(3S)-1-{[3-(methylsulfanyl)phenyl]methyl}-6-oxopiperidine-3-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C14 H18 N2 O2 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-03-21 _chem_comp.pdbx_modified_date 2025-03-28 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 278.370 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1B2Y _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7I4K _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1B2Y N1 N1 N 0 1 N N N N N N 11.406 13.514 17.835 4.119 -2.591 1.041 N1 A1B2Y 1 A1B2Y C4 C1 C 0 1 Y N N N N N 10.184 10.854 22.819 -1.648 2.151 0.111 C4 A1B2Y 2 A1B2Y C5 C2 C 0 1 Y N N N N N 9.360 11.742 23.498 -1.133 1.167 -0.713 C5 A1B2Y 3 A1B2Y C6 C3 C 0 1 N N N N N N 9.477 13.235 23.296 0.128 1.425 -1.496 C6 A1B2Y 4 A1B2Y C7 C4 C 0 1 N N N N N N 10.313 13.859 21.078 1.763 -0.350 -0.826 C7 A1B2Y 5 A1B2Y C8 C5 C 0 1 N N S N N N 11.574 13.936 20.206 2.633 -0.730 0.373 C8 A1B2Y 6 A1B2Y C10 C6 C 0 1 N N N N N N 12.547 14.914 20.875 3.702 0.353 0.565 C10 A1B2Y 7 A1B2Y C13 C7 C 0 1 Y N N N N N 8.423 11.236 24.395 -1.773 -0.053 -0.818 C13 A1B2Y 8 A1B2Y O1 O1 O 0 1 N N N N N N 11.948 13.823 24.323 1.390 3.058 0.092 O1 A1B2Y 9 A1B2Y C12 C8 C 0 1 N N N N N N 11.808 13.922 23.109 1.846 1.934 0.099 C12 A1B2Y 10 A1B2Y C11 C9 C 0 1 N N N N N N 12.951 14.407 22.261 3.008 1.645 1.005 C11 A1B2Y 11 A1B2Y C9 C10 C 0 1 N N N N N N 11.222 14.399 18.804 3.299 -2.057 0.114 C9 A1B2Y 12 A1B2Y O O2 O 0 1 N N N N N N 10.782 15.536 18.600 3.097 -2.644 -0.928 O A1B2Y 13 A1B2Y N N2 N 0 1 N N N N N N 10.633 13.653 22.498 1.289 1.022 -0.698 N A1B2Y 14 A1B2Y C3 C11 C 0 1 Y N N N N N 10.081 9.489 23.033 -2.803 1.916 0.836 C3 A1B2Y 15 A1B2Y C2 C12 C 0 1 Y N N N N N 9.150 8.992 23.930 -3.445 0.698 0.739 C2 A1B2Y 16 A1B2Y C1 C13 C 0 1 Y N N N N N 8.312 9.865 24.608 -2.936 -0.290 -0.096 C1 A1B2Y 17 A1B2Y S S1 S 0 1 N N N N N N 7.101 9.213 25.719 -3.752 -1.847 -0.222 S A1B2Y 18 A1B2Y C C14 C 0 1 N N N N N N 6.404 10.670 26.498 -5.163 -1.660 0.903 C A1B2Y 19 A1B2Y H12 H1 H 0 1 N N N N N N 11.186 13.755 16.890 4.280 -2.122 1.874 H12 A1B2Y 20 A1B2Y H11 H2 H 0 1 N N N N N N 11.765 12.605 18.049 4.544 -3.447 0.876 H11 A1B2Y 21 A1B2Y H6 H3 H 0 1 N N N N N N 10.913 11.231 22.117 -1.146 3.103 0.191 H6 A1B2Y 22 A1B2Y H8 H4 H 0 1 N N N N N N 8.566 13.585 22.790 0.106 0.849 -2.421 H8 A1B2Y 23 A1B2Y H7 H5 H 0 1 N N N N N N 9.553 13.710 24.285 0.199 2.487 -1.731 H7 A1B2Y 24 A1B2Y H10 H6 H 0 1 N N N N N N 9.692 13.021 20.729 2.348 -0.446 -1.741 H10 A1B2Y 25 A1B2Y H9 H7 H 0 1 N N N N N N 9.752 14.799 20.974 0.905 -1.021 -0.875 H9 A1B2Y 26 A1B2Y H H8 H 0 1 N N N N N N 12.039 12.941 20.156 2.015 -0.796 1.267 H A1B2Y 27 A1B2Y H14 H9 H 0 1 N N N N N N 13.447 15.014 20.250 4.410 0.038 1.332 H14 A1B2Y 28 A1B2Y H13 H10 H 0 1 N N N N N N 12.061 15.895 20.977 4.228 0.521 -0.374 H13 A1B2Y 29 A1B2Y H17 H11 H 0 1 N N N N N N 7.776 11.914 24.931 -1.370 -0.821 -1.462 H17 A1B2Y 30 A1B2Y H16 H12 H 0 1 N N N N N N 13.657 13.574 22.129 2.650 1.533 2.028 H16 A1B2Y 31 A1B2Y H15 H13 H 0 1 N N N N N N 13.449 15.229 22.795 3.718 2.471 0.959 H15 A1B2Y 32 A1B2Y H5 H14 H 0 1 N N N N N N 10.729 8.810 22.498 -3.202 2.687 1.478 H5 A1B2Y 33 A1B2Y H4 H15 H 0 1 N N N N N N 9.077 7.928 24.101 -4.346 0.515 1.306 H4 A1B2Y 34 A1B2Y H2 H16 H 0 1 N N N N N N 5.629 10.367 27.217 -4.799 -1.458 1.911 H2 A1B2Y 35 A1B2Y H1 H17 H 0 1 N N N N N N 7.198 11.219 27.025 -5.787 -0.832 0.569 H1 A1B2Y 36 A1B2Y H3 H18 H 0 1 N N N N N N 5.957 11.318 25.730 -5.749 -2.579 0.906 H3 A1B2Y 37 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1B2Y C S SING N N 1 A1B2Y S C1 SING N N 2 A1B2Y C1 C2 SING Y N 3 A1B2Y C2 C3 DOUB Y N 4 A1B2Y C3 C4 SING Y N 5 A1B2Y C4 C5 DOUB Y N 6 A1B2Y C5 C6 SING N N 7 A1B2Y C6 N SING N N 8 A1B2Y N C7 SING N N 9 A1B2Y C7 C8 SING N N 10 A1B2Y C9 C8 SING N N 11 A1B2Y N1 C9 SING N N 12 A1B2Y O C9 DOUB N N 13 A1B2Y C8 C10 SING N N 14 A1B2Y C10 C11 SING N N 15 A1B2Y C11 C12 SING N N 16 A1B2Y N C12 SING N N 17 A1B2Y C12 O1 DOUB N N 18 A1B2Y C13 C5 SING Y N 19 A1B2Y C1 C13 DOUB Y N 20 A1B2Y N1 H12 SING N N 21 A1B2Y N1 H11 SING N N 22 A1B2Y C4 H6 SING N N 23 A1B2Y C6 H8 SING N N 24 A1B2Y C6 H7 SING N N 25 A1B2Y C7 H10 SING N N 26 A1B2Y C7 H9 SING N N 27 A1B2Y C8 H SING N N 28 A1B2Y C10 H14 SING N N 29 A1B2Y C10 H13 SING N N 30 A1B2Y C13 H17 SING N N 31 A1B2Y C11 H16 SING N N 32 A1B2Y C11 H15 SING N N 33 A1B2Y C3 H5 SING N N 34 A1B2Y C2 H4 SING N N 35 A1B2Y C H2 SING N N 36 A1B2Y C H1 SING N N 37 A1B2Y C H3 SING N N 38 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1B2Y SMILES ACDLabs 14.52 "NC(=O)C1CCC(=O)N(Cc2cc(SC)ccc2)C1" A1B2Y InChI InChI 1.06 "InChI=1S/C14H18N2O2S/c1-19-12-4-2-3-10(7-12)8-16-9-11(14(15)18)5-6-13(16)17/h2-4,7,11H,5-6,8-9H2,1H3,(H2,15,18)/t11-/m0/s1" A1B2Y InChIKey InChI 1.06 ZJIYWYXPZXQCRR-NSHDSACASA-N A1B2Y SMILES_CANONICAL CACTVS 3.385 "CSc1cccc(CN2C[C@H](CCC2=O)C(N)=O)c1" A1B2Y SMILES CACTVS 3.385 "CSc1cccc(CN2C[CH](CCC2=O)C(N)=O)c1" A1B2Y SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "CSc1cccc(c1)CN2C[C@H](CCC2=O)C(=O)N" A1B2Y SMILES "OpenEye OEToolkits" 3.1.0.0 "CSc1cccc(c1)CN2CC(CCC2=O)C(=O)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1B2Y "SYSTEMATIC NAME" ACDLabs 14.52 "(3S)-1-{[3-(methylsulfanyl)phenyl]methyl}-6-oxopiperidine-3-carboxamide" A1B2Y "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "(3~{S})-1-[(3-methylsulfanylphenyl)methyl]-6-oxidanylidene-piperidine-3-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1B2Y "Create component" 2025-03-21 RCSB A1B2Y "Initial release" 2025-04-02 RCSB #