data_A1B39 # _chem_comp.id A1B39 _chem_comp.name "(3S)-1-[(1H-indol-5-yl)methyl]-6-oxopiperidine-3-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C15 H17 N3 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-03-21 _chem_comp.pdbx_modified_date 2025-03-28 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 271.314 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1B39 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7I5U _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1B39 N1 N1 N 0 1 N N N N N N 24.867 14.209 10.227 -1.059 -0.709 0.819 N1 A1B39 1 A1B39 C4 C1 C 0 1 N N N N N N 23.647 14.328 9.638 -1.171 -1.840 0.122 C4 A1B39 2 A1B39 C5 C2 C 0 1 N N N N N N 26.049 13.950 9.386 0.041 -0.601 1.781 C5 A1B39 3 A1B39 C6 C3 C 0 1 Y N N N N N 26.315 12.484 9.120 1.252 -0.021 1.096 C6 A1B39 4 A1B39 C7 C4 C 0 1 Y N N N N N 25.513 11.490 9.684 1.439 1.354 1.077 C7 A1B39 5 A1B39 C8 C5 C 0 1 Y N N N N N 25.773 10.139 9.487 2.539 1.905 0.457 C8 A1B39 6 A1B39 C10 C6 C 0 1 Y N N N N N 28.447 8.729 7.527 5.195 0.126 -1.242 C10 A1B39 7 A1B39 C13 C7 C 0 1 Y N N N N N 27.378 12.106 8.302 2.159 -0.854 0.504 C13 A1B39 8 A1B39 O1 O1 O 0 1 N N N N N N 23.504 14.294 8.423 -0.335 -2.703 0.289 O1 A1B39 9 A1B39 C3 C8 C 0 1 N N N N N N 22.444 14.519 10.530 -2.277 -2.103 -0.859 C3 A1B39 10 A1B39 C2 C9 C 0 1 N N N N N N 22.786 15.067 11.911 -2.950 -0.785 -1.251 C2 A1B39 11 A1B39 C14 C10 C 0 1 N N N N N N 25.162 14.366 11.659 -1.959 0.429 0.681 C14 A1B39 12 A1B39 C1 C11 C 0 1 N N S N N N 23.897 14.199 12.506 -3.274 -0.007 0.030 C1 A1B39 13 A1B39 C C12 C 0 1 N N N N N N 24.162 14.580 13.952 -4.095 1.210 -0.312 C A1B39 14 A1B39 O O2 O 0 1 N N N N N N 24.641 15.679 14.245 -3.679 2.317 -0.044 O A1B39 15 A1B39 N N2 N 0 1 N N N N N N 23.841 13.673 14.863 -5.292 1.067 -0.916 N A1B39 16 A1B39 C12 C13 C 0 1 Y N N N N N 27.659 10.762 8.063 3.281 -0.317 -0.131 C12 A1B39 17 A1B39 C9 C14 C 0 1 Y N N N N N 26.858 9.790 8.687 3.473 1.077 -0.157 C9 A1B39 18 A1B39 C11 C15 C 0 1 Y N N N N N 28.660 10.050 7.314 4.421 -0.896 -0.845 C11 A1B39 19 A1B39 N2 N3 N 0 1 Y N N N N N 27.364 8.557 8.353 4.644 1.312 -0.841 N2 A1B39 20 A1B39 H9 H1 H 0 1 N N N N N N 25.901 14.454 8.420 -0.258 0.049 2.603 H9 A1B39 21 A1B39 H8 H2 H 0 1 N N N N N N 26.930 14.374 9.890 0.282 -1.591 2.169 H8 A1B39 22 A1B39 H10 H3 H 0 1 N N N N N N 24.667 11.779 10.290 0.715 1.999 1.554 H10 A1B39 23 A1B39 H11 H4 H 0 1 N N N N N N 25.151 9.382 9.941 2.676 2.976 0.447 H11 A1B39 24 A1B39 H12 H5 H 0 1 N N N N N N 29.041 7.930 7.109 6.117 0.026 -1.797 H12 A1B39 25 A1B39 H14 H6 H 0 1 N N N N N N 27.994 12.867 7.846 2.009 -1.923 0.526 H14 A1B39 26 A1B39 H7 H7 H 0 1 N N N N N N 21.947 13.546 10.656 -1.865 -2.578 -1.750 H7 A1B39 27 A1B39 H6 H8 H 0 1 N N N N N N 21.755 15.222 10.038 -3.015 -2.763 -0.405 H6 A1B39 28 A1B39 H5 H9 H 0 1 N N N N N N 21.897 15.029 12.558 -2.274 -0.199 -1.875 H5 A1B39 29 A1B39 H4 H10 H 0 1 N N N N N N 23.132 16.107 11.824 -3.869 -0.991 -1.799 H4 A1B39 30 A1B39 H16 H11 H 0 1 N N N N N N 25.898 13.606 11.959 -2.171 0.843 1.667 H16 A1B39 31 A1B39 H15 H12 H 0 1 N N N N N N 25.580 15.369 11.832 -1.483 1.192 0.065 H15 A1B39 32 A1B39 H H13 H 0 1 N N N N N N 23.582 13.146 12.467 -3.831 -0.646 0.715 H A1B39 33 A1B39 H3 H14 H 0 1 N N N N N N 23.985 13.867 15.834 -5.624 0.182 -1.131 H3 A1B39 34 A1B39 H2 H15 H 0 1 N N N N N N 23.455 12.795 14.580 -5.820 1.850 -1.136 H2 A1B39 35 A1B39 H13 H16 H 0 1 N N N N N N 29.434 10.486 6.699 4.603 -1.946 -1.020 H13 A1B39 36 A1B39 H1 H17 H 0 1 N N N N N N 27.002 7.677 8.661 5.025 2.188 -1.009 H1 A1B39 37 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1B39 N C SING N N 1 A1B39 O C DOUB N N 2 A1B39 C C1 SING N N 3 A1B39 C1 C2 SING N N 4 A1B39 C2 C3 SING N N 5 A1B39 C3 C4 SING N N 6 A1B39 C4 O1 DOUB N N 7 A1B39 N1 C4 SING N N 8 A1B39 C5 N1 SING N N 9 A1B39 C6 C5 SING N N 10 A1B39 C6 C7 DOUB Y N 11 A1B39 C7 C8 SING Y N 12 A1B39 C8 C9 DOUB Y N 13 A1B39 C9 N2 SING Y N 14 A1B39 N2 C10 SING Y N 15 A1B39 C10 C11 DOUB Y N 16 A1B39 C11 C12 SING Y N 17 A1B39 C9 C12 SING Y N 18 A1B39 C12 C13 DOUB Y N 19 A1B39 C13 C6 SING Y N 20 A1B39 C14 N1 SING N N 21 A1B39 C1 C14 SING N N 22 A1B39 C5 H9 SING N N 23 A1B39 C5 H8 SING N N 24 A1B39 C7 H10 SING N N 25 A1B39 C8 H11 SING N N 26 A1B39 C10 H12 SING N N 27 A1B39 C13 H14 SING N N 28 A1B39 C3 H7 SING N N 29 A1B39 C3 H6 SING N N 30 A1B39 C2 H5 SING N N 31 A1B39 C2 H4 SING N N 32 A1B39 C14 H16 SING N N 33 A1B39 C14 H15 SING N N 34 A1B39 C1 H SING N N 35 A1B39 N H3 SING N N 36 A1B39 N H2 SING N N 37 A1B39 C11 H13 SING N N 38 A1B39 N2 H1 SING N N 39 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1B39 SMILES ACDLabs 14.52 "NC(=O)C1CCC(=O)N(Cc2cc3cc[NH]c3cc2)C1" A1B39 InChI InChI 1.06 "InChI=1S/C15H17N3O2/c16-15(20)12-2-4-14(19)18(9-12)8-10-1-3-13-11(7-10)5-6-17-13/h1,3,5-7,12,17H,2,4,8-9H2,(H2,16,20)/t12-/m0/s1" A1B39 InChIKey InChI 1.06 RHJKYYVBPJDBPQ-LBPRGKRZSA-N A1B39 SMILES_CANONICAL CACTVS 3.385 "NC(=O)[C@H]1CCC(=O)N(C1)Cc2ccc3[nH]ccc3c2" A1B39 SMILES CACTVS 3.385 "NC(=O)[CH]1CCC(=O)N(C1)Cc2ccc3[nH]ccc3c2" A1B39 SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "c1cc2c(cc[nH]2)cc1CN3C[C@H](CCC3=O)C(=O)N" A1B39 SMILES "OpenEye OEToolkits" 3.1.0.0 "c1cc2c(cc[nH]2)cc1CN3CC(CCC3=O)C(=O)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1B39 "SYSTEMATIC NAME" ACDLabs 14.52 "(3S)-1-[(1H-indol-5-yl)methyl]-6-oxopiperidine-3-carboxamide" A1B39 "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "(3~{S})-1-(1~{H}-indol-5-ylmethyl)-6-oxidanylidene-piperidine-3-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1B39 "Create component" 2025-03-21 RCSB A1B39 "Initial release" 2025-04-02 RCSB #