data_A1B3I # _chem_comp.id A1B3I _chem_comp.name "(3S)-1-{[3-(methylsulfanyl)pyrazin-2-yl]acetyl}piperidine-3-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H18 N4 O2 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-03-21 _chem_comp.pdbx_modified_date 2025-03-28 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 294.373 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1B3I _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7I51 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1B3I N1 N1 N 0 1 Y N N N N N 7.733 11.155 25.701 2.490 1.987 0.728 N1 A1B3I 1 A1B3I N3 N2 N 0 1 N N N N N N 11.357 13.590 17.865 -4.639 0.836 -2.201 N3 A1B3I 2 A1B3I C4 C1 C 0 1 Y N N N N N 8.711 10.997 24.798 2.260 0.694 0.604 C4 A1B3I 3 A1B3I C5 C2 C 0 1 N N N N N N 9.412 12.263 24.398 0.998 0.094 1.168 C5 A1B3I 4 A1B3I C6 C3 C 0 1 N N N N N N 9.296 12.564 22.915 -0.086 0.130 0.122 C6 A1B3I 5 A1B3I C7 C4 C 0 1 N N N N N N 11.163 14.192 23.183 -1.604 -0.925 1.727 C7 A1B3I 6 A1B3I C8 C5 C 0 1 N N N N N N 12.467 14.177 22.417 -2.840 -0.226 2.302 C8 A1B3I 7 A1B3I C10 C6 C 0 1 N N S N N N 11.184 13.957 20.244 -3.606 0.365 -0.004 C10 A1B3I 8 A1B3I O1 O1 O 0 1 N N N N N N 10.707 15.619 18.573 -5.782 -0.274 -0.657 O1 A1B3I 9 A1B3I C11 C7 C 0 1 N N N N N N 11.048 14.457 18.814 -4.755 0.285 -0.976 C11 A1B3I 10 A1B3I C9 C8 C 0 1 N N N N N N 12.267 14.737 21.007 -3.994 -0.334 1.301 C9 A1B3I 11 A1B3I C12 C9 C 0 1 N N N N N N 9.891 14.062 21.058 -2.379 -0.328 -0.604 C12 A1B3I 12 A1B3I N2 N3 N 0 1 N N N N N N 10.087 13.542 22.416 -1.311 -0.356 0.405 N2 A1B3I 13 A1B3I O O2 O 0 1 N N N N N N 8.505 11.953 22.214 0.143 0.597 -0.973 O A1B3I 14 A1B3I C1 C10 C 0 1 Y N N N N N 9.043 9.652 24.333 3.187 -0.117 -0.050 C1 A1B3I 15 A1B3I S S1 S 0 1 N N N N N N 10.348 9.463 23.172 2.885 -1.844 -0.219 S A1B3I 16 A1B3I C C11 C 0 1 N N N N N N 10.405 7.686 22.948 4.348 -2.428 -1.119 C A1B3I 17 A1B3I C3 C12 C 0 1 Y N N N N N 7.110 10.058 26.156 3.597 2.514 0.232 C3 A1B3I 18 A1B3I C2 C13 C 0 1 Y N N N N N 7.428 8.796 25.706 4.518 1.715 -0.417 C2 A1B3I 19 A1B3I N N4 N 0 1 Y N N N N N 8.390 8.580 24.791 4.296 0.417 -0.545 N A1B3I 20 A1B3I H15 H1 H 0 1 N N N N N N 11.320 13.866 16.904 -3.817 1.283 -2.457 H15 A1B3I 21 A1B3I H14 H2 H 0 1 N N N N N N 11.628 12.659 18.108 -5.378 0.785 -2.827 H14 A1B3I 22 A1B3I H6 H3 H 0 1 N N N N N N 8.972 13.100 24.961 1.186 -0.939 1.461 H6 A1B3I 23 A1B3I H7 H4 H 0 1 N N N N N N 10.478 12.169 24.654 0.682 0.667 2.040 H7 A1B3I 24 A1B3I H9 H5 H 0 1 N N N N N N 10.879 15.235 23.387 -0.753 -0.766 2.390 H9 A1B3I 25 A1B3I H8 H6 H 0 1 N N N N N N 11.299 13.657 24.134 -1.799 -1.993 1.633 H8 A1B3I 26 A1B3I H10 H7 H 0 1 N N N N N N 13.207 14.793 22.950 -3.126 -0.704 3.239 H10 A1B3I 27 A1B3I H11 H8 H 0 1 N N N N N N 12.834 13.142 22.347 -2.613 0.825 2.483 H11 A1B3I 28 A1B3I H H9 H 0 1 N N N N N N 11.484 12.899 20.212 -3.372 1.410 0.199 H A1B3I 29 A1B3I H12 H10 H 0 1 N N N N N N 11.964 15.792 21.080 -4.204 -1.385 1.102 H12 A1B3I 30 A1B3I H13 H11 H 0 1 N N N N N N 13.216 14.665 20.455 -4.882 0.141 1.718 H13 A1B3I 31 A1B3I H16 H12 H 0 1 N N N N N N 9.586 15.117 21.116 -2.638 -1.347 -0.891 H16 A1B3I 32 A1B3I H17 H13 H 0 1 N N N N N N 9.102 13.480 20.559 -2.041 0.224 -1.482 H17 A1B3I 33 A1B3I H2 H14 H 0 1 N N N N N N 11.198 7.432 22.229 4.411 -1.917 -2.080 H2 A1B3I 34 A1B3I H1 H15 H 0 1 N N N N N N 10.616 7.202 23.913 5.244 -2.214 -0.535 H1 A1B3I 35 A1B3I H3 H16 H 0 1 N N N N N N 9.436 7.334 22.565 4.270 -3.502 -1.283 H3 A1B3I 36 A1B3I H5 H17 H 0 1 N N N N N N 6.334 10.168 26.899 3.782 3.573 0.335 H5 A1B3I 37 A1B3I H4 H18 H 0 1 N N N N N N 6.886 7.950 26.102 5.421 2.150 -0.820 H4 A1B3I 38 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1B3I C S SING N N 1 A1B3I S C1 SING N N 2 A1B3I C1 N DOUB Y N 3 A1B3I N C2 SING Y N 4 A1B3I C2 C3 DOUB Y N 5 A1B3I C3 N1 SING Y N 6 A1B3I N1 C4 DOUB Y N 7 A1B3I C1 C4 SING Y N 8 A1B3I C4 C5 SING N N 9 A1B3I C5 C6 SING N N 10 A1B3I O C6 DOUB N N 11 A1B3I C6 N2 SING N N 12 A1B3I N2 C7 SING N N 13 A1B3I C7 C8 SING N N 14 A1B3I C8 C9 SING N N 15 A1B3I C9 C10 SING N N 16 A1B3I C10 C11 SING N N 17 A1B3I N3 C11 SING N N 18 A1B3I C11 O1 DOUB N N 19 A1B3I C12 C10 SING N N 20 A1B3I N2 C12 SING N N 21 A1B3I N3 H15 SING N N 22 A1B3I N3 H14 SING N N 23 A1B3I C5 H6 SING N N 24 A1B3I C5 H7 SING N N 25 A1B3I C7 H9 SING N N 26 A1B3I C7 H8 SING N N 27 A1B3I C8 H10 SING N N 28 A1B3I C8 H11 SING N N 29 A1B3I C10 H SING N N 30 A1B3I C9 H12 SING N N 31 A1B3I C9 H13 SING N N 32 A1B3I C12 H16 SING N N 33 A1B3I C12 H17 SING N N 34 A1B3I C H2 SING N N 35 A1B3I C H1 SING N N 36 A1B3I C H3 SING N N 37 A1B3I C3 H5 SING N N 38 A1B3I C2 H4 SING N N 39 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1B3I SMILES ACDLabs 14.52 "O=C(Cc1nccnc1SC)N1CCCC(C1)C(N)=O" A1B3I InChI InChI 1.06 "InChI=1S/C13H18N4O2S/c1-20-13-10(15-4-5-16-13)7-11(18)17-6-2-3-9(8-17)12(14)19/h4-5,9H,2-3,6-8H2,1H3,(H2,14,19)/t9-/m0/s1" A1B3I InChIKey InChI 1.06 WUSGUAGFFPWQJA-VIFPVBQESA-N A1B3I SMILES_CANONICAL CACTVS 3.385 "CSc1nccnc1CC(=O)N2CCC[C@@H](C2)C(N)=O" A1B3I SMILES CACTVS 3.385 "CSc1nccnc1CC(=O)N2CCC[CH](C2)C(N)=O" A1B3I SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "CSc1c(nccn1)CC(=O)N2CCC[C@@H](C2)C(=O)N" A1B3I SMILES "OpenEye OEToolkits" 3.1.0.0 "CSc1c(nccn1)CC(=O)N2CCCC(C2)C(=O)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1B3I "SYSTEMATIC NAME" ACDLabs 14.52 "(3S)-1-{[3-(methylsulfanyl)pyrazin-2-yl]acetyl}piperidine-3-carboxamide" A1B3I "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "(3~{S})-1-[2-(3-methylsulfanylpyrazin-2-yl)ethanoyl]piperidine-3-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1B3I "Create component" 2025-03-21 RCSB A1B3I "Initial release" 2025-04-02 RCSB #