data_A1B3L # _chem_comp.id A1B3L _chem_comp.name "(3S)-1-{[(2R)-1,4-dithian-2-yl]acetyl}piperidine-3-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C12 H20 N2 O2 S2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-03-21 _chem_comp.pdbx_modified_date 2025-03-28 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 288.429 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1B3L _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7I54 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1B3L N1 N1 N 0 1 N N N N N N 8.546 16.060 21.163 1.453 0.677 -0.496 N1 A1B3L 1 A1B3L C4 C1 C 0 1 N N N N N N 9.650 16.463 22.048 1.724 2.062 -0.087 C4 A1B3L 2 A1B3L C5 C2 C 0 1 N N N N N N 7.607 15.153 21.490 0.188 0.215 -0.560 C5 A1B3L 3 A1B3L C6 C3 C 0 1 N N N N N N 7.504 14.735 22.932 -0.964 1.121 -0.210 C6 A1B3L 4 A1B3L C7 C4 C 0 1 N N R N N N 7.481 13.225 23.044 -2.280 0.356 -0.364 C7 A1B3L 5 A1B3L C8 C5 C 0 1 N N N N N N 7.341 12.826 24.463 -3.450 1.309 -0.131 C8 A1B3L 6 A1B3L C10 C6 C 0 1 N N N N N N 9.131 10.916 22.613 -3.896 -1.831 0.460 C10 A1B3L 7 A1B3L O1 O1 O 0 1 N N N N N N 6.832 14.706 20.671 -0.023 -0.930 -0.899 O1 A1B3L 8 A1B3L C3 C7 C 0 1 N N N N N N 11.029 16.253 21.399 2.729 2.046 1.070 C3 A1B3L 9 A1B3L C2 C8 C 0 1 N N N N N N 11.045 16.764 19.970 3.973 1.260 0.649 C2 A1B3L 10 A1B3L C11 C9 C 0 1 N N N N N N 8.612 16.619 19.813 2.586 -0.193 -0.840 C11 A1B3L 11 A1B3L C1 C10 C 0 1 N N S N N N 9.903 16.135 19.172 3.581 -0.185 0.330 C1 A1B3L 12 A1B3L C C11 C 0 1 N N N N N N 10.056 16.422 17.691 4.811 -0.966 -0.052 C A1B3L 13 A1B3L O O2 O 0 1 N N N N N N 9.599 17.454 17.192 4.885 -1.484 -1.147 O A1B3L 14 A1B3L N N2 N 0 1 N N N N N N 10.761 15.527 17.023 5.830 -1.091 0.822 N A1B3L 15 A1B3L S1 S1 S 0 1 N N N N N N 9.022 12.677 22.215 -2.333 -0.997 0.839 S1 A1B3L 16 A1B3L C9 C12 C 0 1 N N N N N N 8.774 10.610 23.938 -5.065 -0.879 0.693 C9 A1B3L 17 A1B3L S S2 S 0 1 N N N N N N 7.068 11.051 24.355 -5.012 0.474 -0.510 S A1B3L 18 A1B3L H9 H1 H 0 1 N N N N N N 9.599 15.866 22.970 2.143 2.616 -0.927 H9 A1B3L 19 A1B3L H8 H2 H 0 1 N N N N N N 9.534 17.529 22.294 0.797 2.535 0.237 H8 A1B3L 20 A1B3L H10 H3 H 0 1 N N N N N N 8.370 15.126 23.485 -0.859 1.461 0.821 H10 A1B3L 21 A1B3L H11 H4 H 0 1 N N N N N N 6.578 15.144 23.363 -0.964 1.983 -0.878 H11 A1B3L 22 A1B3L H1 H5 H 0 1 N N N N N N 6.650 12.819 22.449 -2.343 -0.055 -1.372 H1 A1B3L 23 A1B3L H12 H6 H 0 1 N N N N N N 8.256 13.052 25.030 -3.453 1.628 0.911 H12 A1B3L 24 A1B3L H13 H7 H 0 1 N N N N N N 6.484 13.330 24.933 -3.340 2.181 -0.775 H13 A1B3L 25 A1B3L H16 H8 H 0 1 N N N N N N 10.168 10.587 22.448 -3.892 -2.151 -0.582 H16 A1B3L 26 A1B3L H17 H9 H 0 1 N N N N N N 8.460 10.366 21.937 -4.006 -2.703 1.105 H17 A1B3L 27 A1B3L H7 H10 H 0 1 N N N N N N 11.266 15.179 21.399 3.012 3.069 1.319 H7 A1B3L 28 A1B3L H6 H11 H 0 1 N N N N N N 11.787 16.796 21.983 2.274 1.572 1.940 H6 A1B3L 29 A1B3L H5 H12 H 0 1 N N N N N N 12.004 16.501 19.501 4.412 1.721 -0.235 H5 A1B3L 30 A1B3L H4 H13 H 0 1 N N N N N N 10.926 17.858 19.974 4.699 1.268 1.462 H4 A1B3L 31 A1B3L H19 H14 H 0 1 N N N N N N 7.750 16.275 19.223 2.228 -1.209 -1.010 H19 A1B3L 32 A1B3L H18 H15 H 0 1 N N N N N N 8.608 17.718 19.862 3.072 0.179 -1.742 H18 A1B3L 33 A1B3L H H16 H 0 1 N N N N N N 9.959 15.045 19.311 3.119 -0.639 1.207 H A1B3L 34 A1B3L H2 H17 H 0 1 N N N N N N 10.953 15.666 16.051 5.771 -0.677 1.697 H2 A1B3L 35 A1B3L H3 H18 H 0 1 N N N N N N 11.103 14.711 17.489 6.622 -1.594 0.576 H3 A1B3L 36 A1B3L H14 H19 H 0 1 N N N N N N 9.449 11.156 24.614 -6.003 -1.424 0.584 H14 A1B3L 37 A1B3L H15 H20 H 0 1 N N N N N N 8.900 9.528 24.090 -5.002 -0.468 1.701 H15 A1B3L 38 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1B3L N C SING N N 1 A1B3L O C DOUB N N 2 A1B3L C C1 SING N N 3 A1B3L C1 C2 SING N N 4 A1B3L C2 C3 SING N N 5 A1B3L C3 C4 SING N N 6 A1B3L C4 N1 SING N N 7 A1B3L N1 C5 SING N N 8 A1B3L C5 O1 DOUB N N 9 A1B3L C6 C5 SING N N 10 A1B3L C7 C6 SING N N 11 A1B3L C7 C8 SING N N 12 A1B3L C8 S SING N N 13 A1B3L S C9 SING N N 14 A1B3L C9 C10 SING N N 15 A1B3L C10 S1 SING N N 16 A1B3L S1 C7 SING N N 17 A1B3L C11 N1 SING N N 18 A1B3L C1 C11 SING N N 19 A1B3L C4 H9 SING N N 20 A1B3L C4 H8 SING N N 21 A1B3L C6 H10 SING N N 22 A1B3L C6 H11 SING N N 23 A1B3L C7 H1 SING N N 24 A1B3L C8 H12 SING N N 25 A1B3L C8 H13 SING N N 26 A1B3L C10 H16 SING N N 27 A1B3L C10 H17 SING N N 28 A1B3L C3 H7 SING N N 29 A1B3L C3 H6 SING N N 30 A1B3L C2 H5 SING N N 31 A1B3L C2 H4 SING N N 32 A1B3L C11 H19 SING N N 33 A1B3L C11 H18 SING N N 34 A1B3L C1 H SING N N 35 A1B3L N H2 SING N N 36 A1B3L N H3 SING N N 37 A1B3L C9 H14 SING N N 38 A1B3L C9 H15 SING N N 39 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1B3L SMILES ACDLabs 14.52 "O=C(CC1CSCCS1)N1CCCC(C1)C(N)=O" A1B3L InChI InChI 1.06 "InChI=1S/C12H20N2O2S2/c13-12(16)9-2-1-3-14(7-9)11(15)6-10-8-17-4-5-18-10/h9-10H,1-8H2,(H2,13,16)/t9-,10+/m0/s1" A1B3L InChIKey InChI 1.06 KOQMCRODGRBJEU-VHSXEESVSA-N A1B3L SMILES_CANONICAL CACTVS 3.385 "NC(=O)[C@H]1CCCN(C1)C(=O)C[C@@H]2CSCCS2" A1B3L SMILES CACTVS 3.385 "NC(=O)[CH]1CCCN(C1)C(=O)C[CH]2CSCCS2" A1B3L SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "C1C[C@@H](CN(C1)C(=O)C[C@@H]2CSCCS2)C(=O)N" A1B3L SMILES "OpenEye OEToolkits" 3.1.0.0 "C1CC(CN(C1)C(=O)CC2CSCCS2)C(=O)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1B3L "SYSTEMATIC NAME" ACDLabs 14.52 "(3S)-1-{[(2R)-1,4-dithian-2-yl]acetyl}piperidine-3-carboxamide" A1B3L "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "(3~{S})-1-[2-[(2~{R})-1,4-dithian-2-yl]ethanoyl]piperidine-3-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1B3L "Create component" 2025-03-21 RCSB A1B3L "Initial release" 2025-04-02 RCSB #