data_A1B3M # _chem_comp.id A1B3M _chem_comp.name "(3S)-1-[(3R)-thiolane-3-carbonyl]piperidine-3-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C11 H18 N2 O2 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-03-21 _chem_comp.pdbx_modified_date 2025-03-28 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 242.338 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1B3M _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7I55 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1B3M N1 N1 N 0 1 N N N N N N 8.892 15.490 21.836 0.396 0.063 -0.340 N1 A1B3M 1 A1B3M C4 C1 C 0 1 N N N N N N 9.844 16.287 22.611 0.300 1.527 -0.405 C4 A1B3M 2 A1B3M C5 C2 C 0 1 N N N N N N 8.178 14.512 22.411 -0.691 -0.686 -0.068 C5 A1B3M 3 A1B3M C6 C3 C 0 1 N N S N N N 8.377 14.274 23.889 -1.996 -0.019 0.284 C6 A1B3M 4 A1B3M C7 C4 C 0 1 N N N N N N 9.605 13.395 24.248 -2.848 -0.970 1.126 C7 A1B3M 5 A1B3M C8 C5 C 0 1 N N N N N N 9.211 11.939 24.046 -4.355 -0.746 0.923 C8 A1B3M 6 A1B3M C10 C6 C 0 1 N N N N N N 8.810 15.893 20.435 1.699 -0.571 -0.585 C10 A1B3M 7 A1B3M O1 O1 O 0 1 N N N N N N 7.360 13.872 21.789 -0.619 -1.896 -0.106 O1 A1B3M 8 A1B3M C9 C7 C 0 1 N N N N N N 7.155 13.505 24.506 -2.768 0.333 -1.015 C9 A1B3M 9 A1B3M S S1 S 0 1 N N N N N N 7.604 11.763 24.617 -4.471 0.562 -0.357 S A1B3M 10 A1B3M C3 C8 C 0 1 N N N N N N 11.236 16.194 22.022 1.348 2.132 0.534 C3 A1B3M 11 A1B3M C2 C9 C 0 1 N N N N N N 11.230 16.627 20.564 2.729 1.577 0.177 C2 A1B3M 12 A1B3M C1 C10 C 0 1 N N S N N N 10.194 15.805 19.778 2.735 0.053 0.356 C1 A1B3M 13 A1B3M C C11 C 0 1 N N N N N N 10.123 16.225 18.318 4.105 -0.486 0.034 C A1B3M 14 A1B3M O O2 O 0 1 N N N N N N 9.771 17.350 17.976 4.244 -1.293 -0.861 O A1B3M 15 A1B3M N N2 N 0 1 N N N N N N 10.453 15.278 17.452 5.175 -0.071 0.740 N A1B3M 16 A1B3M H8 H1 H 0 1 N N N N N N 9.866 15.915 23.646 0.487 1.861 -1.425 H8 A1B3M 17 A1B3M H9 H2 H 0 1 N N N N N N 9.521 17.338 22.606 -0.697 1.842 -0.095 H9 A1B3M 18 A1B3M H1 H3 H 0 1 N N N N N N 8.474 15.242 24.402 -1.800 0.893 0.848 H1 A1B3M 19 A1B3M H11 H4 H 0 1 N N N N N N 10.451 13.648 23.592 -2.603 -1.997 0.854 H11 A1B3M 20 A1B3M H10 H5 H 0 1 N N N N N N 9.891 13.563 25.297 -2.608 -0.820 2.179 H10 A1B3M 21 A1B3M H13 H6 H 0 1 N N N N N N 9.262 11.680 22.978 -4.830 -1.662 0.572 H13 A1B3M 22 A1B3M H12 H7 H 0 1 N N N N N N 9.887 11.284 24.615 -4.817 -0.410 1.851 H12 A1B3M 23 A1B3M H17 H8 H 0 1 N N N N N N 8.113 15.227 19.905 1.627 -1.641 -0.391 H17 A1B3M 24 A1B3M H16 H9 H 0 1 N N N N N N 8.444 16.929 20.375 1.997 -0.407 -1.620 H16 A1B3M 25 A1B3M H15 H10 H 0 1 N N N N N N 6.273 13.624 23.860 -2.391 1.254 -1.459 H15 A1B3M 26 A1B3M H14 H11 H 0 1 N N N N N N 6.932 13.899 25.508 -2.730 -0.490 -1.730 H14 A1B3M 27 A1B3M H7 H12 H 0 1 N N N N N N 11.588 15.154 22.089 1.353 3.217 0.424 H7 A1B3M 28 A1B3M H6 H13 H 0 1 N N N N N N 11.914 16.848 22.591 1.107 1.872 1.565 H6 A1B3M 29 A1B3M H5 H14 H 0 1 N N N N N N 12.228 16.465 20.131 2.959 1.816 -0.862 H5 A1B3M 30 A1B3M H4 H15 H 0 1 N N N N N N 10.972 17.694 20.502 3.480 2.024 0.828 H4 A1B3M 31 A1B3M H H16 H 0 1 N N N N N N 10.512 14.752 19.810 2.480 -0.193 1.387 H A1B3M 32 A1B3M H2 H17 H 0 1 N N N N N N 10.421 15.465 16.470 5.064 0.574 1.456 H2 A1B3M 33 A1B3M H3 H18 H 0 1 N N N N N N 10.734 14.376 17.780 6.057 -0.418 0.533 H3 A1B3M 34 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1B3M N C SING N N 1 A1B3M O C DOUB N N 2 A1B3M C C1 SING N N 3 A1B3M C1 C2 SING N N 4 A1B3M C2 C3 SING N N 5 A1B3M C3 C4 SING N N 6 A1B3M C4 N1 SING N N 7 A1B3M N1 C5 SING N N 8 A1B3M C5 O1 DOUB N N 9 A1B3M C6 C5 SING N N 10 A1B3M C6 C7 SING N N 11 A1B3M C7 C8 SING N N 12 A1B3M C8 S SING N N 13 A1B3M S C9 SING N N 14 A1B3M C9 C6 SING N N 15 A1B3M C10 N1 SING N N 16 A1B3M C1 C10 SING N N 17 A1B3M C4 H8 SING N N 18 A1B3M C4 H9 SING N N 19 A1B3M C6 H1 SING N N 20 A1B3M C7 H11 SING N N 21 A1B3M C7 H10 SING N N 22 A1B3M C8 H13 SING N N 23 A1B3M C8 H12 SING N N 24 A1B3M C10 H17 SING N N 25 A1B3M C10 H16 SING N N 26 A1B3M C9 H15 SING N N 27 A1B3M C9 H14 SING N N 28 A1B3M C3 H7 SING N N 29 A1B3M C3 H6 SING N N 30 A1B3M C2 H5 SING N N 31 A1B3M C2 H4 SING N N 32 A1B3M C1 H SING N N 33 A1B3M N H2 SING N N 34 A1B3M N H3 SING N N 35 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1B3M SMILES ACDLabs 14.52 "O=C(N1CC(CCC1)C(N)=O)C1CCSC1" A1B3M InChI InChI 1.06 "InChI=1S/C11H18N2O2S/c12-10(14)8-2-1-4-13(6-8)11(15)9-3-5-16-7-9/h8-9H,1-7H2,(H2,12,14)/t8-,9-/m0/s1" A1B3M InChIKey InChI 1.06 FOWCZQMGYPBKOB-IUCAKERBSA-N A1B3M SMILES_CANONICAL CACTVS 3.385 "NC(=O)[C@H]1CCCN(C1)C(=O)[C@@H]2CCSC2" A1B3M SMILES CACTVS 3.385 "NC(=O)[CH]1CCCN(C1)C(=O)[CH]2CCSC2" A1B3M SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "C1C[C@@H](CN(C1)C(=O)[C@@H]2CCSC2)C(=O)N" A1B3M SMILES "OpenEye OEToolkits" 3.1.0.0 "C1CC(CN(C1)C(=O)C2CCSC2)C(=O)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1B3M "SYSTEMATIC NAME" ACDLabs 14.52 "(3S)-1-[(3R)-thiolane-3-carbonyl]piperidine-3-carboxamide" A1B3M "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "(3~{S})-1-[(3~{S})-thiolan-3-yl]carbonylpiperidine-3-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1B3M "Create component" 2025-03-21 RCSB A1B3M "Initial release" 2025-04-02 RCSB #