data_A1B3U # _chem_comp.id A1B3U _chem_comp.name "(3S)-N~1~-[4-(methylsulfanyl)pyridin-3-yl]piperidine-1,3-dicarboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H18 N4 O2 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-03-21 _chem_comp.pdbx_modified_date 2025-03-28 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 294.373 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1B3U _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7I5D _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1B3U N1 N1 N 0 1 N N N N N N 26.156 12.412 8.921 0.924 0.183 -0.060 N1 A1B3U 1 A1B3U N3 N2 N 0 1 N N N N N N 23.802 13.702 15.050 -5.223 -1.807 0.227 N3 A1B3U 2 A1B3U C4 C1 C 0 1 Y N N N N N 27.922 11.431 7.522 2.045 -1.945 -0.326 C4 A1B3U 3 A1B3U C5 C2 C 0 1 Y N N N N N 26.865 11.297 8.418 2.102 -0.576 -0.132 C5 A1B3U 4 A1B3U C6 C3 C 0 1 N N N N N N 26.227 12.781 10.226 -0.252 -0.423 0.194 C6 A1B3U 5 A1B3U C7 C4 C 0 1 N N N N N N 24.367 14.421 9.778 -1.352 1.761 0.076 C7 A1B3U 6 A1B3U C8 C5 C 0 1 N N N N N N 22.996 14.305 10.441 -2.419 2.111 -0.966 C8 A1B3U 7 A1B3U C10 C6 C 0 1 N N S N N N 24.129 14.094 12.686 -3.704 0.050 -0.375 C10 A1B3U 8 A1B3U O1 O1 O 0 1 N N N N N N 24.619 15.697 14.410 -5.972 0.282 0.233 O1 A1B3U 9 A1B3U C11 C7 C 0 1 N N N N N N 24.193 14.573 14.129 -5.048 -0.482 0.050 C11 A1B3U 10 A1B3U C9 C8 C 0 1 N N N N N N 23.053 14.836 11.881 -3.774 1.573 -0.502 C9 A1B3U 11 A1B3U C12 C9 C 0 1 N N N N N N 25.491 14.276 12.001 -2.651 -0.324 0.673 C12 A1B3U 12 A1B3U N2 N3 N 0 1 N N N N N N 25.424 13.815 10.608 -1.377 0.311 0.310 N2 A1B3U 13 A1B3U O O2 O 0 1 N N N N N N 26.992 12.241 11.008 -0.300 -1.631 0.320 O A1B3U 14 A1B3U C1 C10 C 0 1 Y N N N N N 26.470 10.003 8.772 3.354 0.041 -0.011 C1 A1B3U 15 A1B3U S S1 S 0 1 N N N N N N 25.075 9.796 9.844 3.485 1.781 0.237 S A1B3U 16 A1B3U C C11 C 0 1 N N N N N N 24.909 8.008 9.980 5.277 2.046 0.326 C A1B3U 17 A1B3U N N4 N 0 1 Y N N N N N 28.558 10.391 6.965 3.151 -2.664 -0.389 N A1B3U 18 A1B3U C3 C12 C 0 1 Y N N N N N 28.156 9.162 7.324 4.347 -2.118 -0.274 C3 A1B3U 19 A1B3U C2 C13 C 0 1 Y N N N N N 27.129 8.910 8.220 4.492 -0.758 -0.090 C2 A1B3U 20 A1B3U H7 H1 H 0 1 N N N N N N 25.585 12.945 8.297 0.957 1.143 -0.190 H7 A1B3U 21 A1B3U H14 H2 H 0 1 N N N N N N 23.846 13.945 16.019 -4.484 -2.418 0.081 H14 A1B3U 22 A1B3U H15 H3 H 0 1 N N N N N N 23.464 12.802 14.775 -6.089 -2.149 0.501 H15 A1B3U 23 A1B3U H6 H4 H 0 1 N N N N N N 28.247 12.427 7.262 1.086 -2.432 -0.421 H6 A1B3U 24 A1B3U H8 H5 H 0 1 N N N N N N 24.600 15.485 9.624 -0.369 2.055 -0.295 H8 A1B3U 25 A1B3U H9 H6 H 0 1 N N N N N N 24.338 13.907 8.806 -1.563 2.288 1.007 H9 A1B3U 26 A1B3U H10 H7 H 0 1 N N N N N N 22.264 14.892 9.867 -2.476 3.194 -1.078 H10 A1B3U 27 A1B3U H11 H8 H 0 1 N N N N N N 22.688 13.249 10.456 -2.156 1.659 -1.922 H11 A1B3U 28 A1B3U H H9 H 0 1 N N N N N N 23.883 13.022 12.685 -3.429 -0.383 -1.337 H A1B3U 29 A1B3U H12 H10 H 0 1 N N N N N N 23.292 15.910 11.862 -4.025 2.007 0.466 H12 A1B3U 30 A1B3U H13 H11 H 0 1 N N N N N N 22.075 14.686 12.361 -4.540 1.842 -1.230 H13 A1B3U 31 A1B3U H16 H12 H 0 1 N N N N N N 25.767 15.341 12.018 -2.970 0.031 1.653 H16 A1B3U 32 A1B3U H17 H13 H 0 1 N N N N N N 26.250 13.691 12.541 -2.528 -1.406 0.698 H17 A1B3U 33 A1B3U H2 H14 H 0 1 N N N N N N 24.058 7.767 10.634 5.739 1.719 -0.606 H2 A1B3U 34 A1B3U H3 H15 H 0 1 N N N N N N 24.737 7.579 8.982 5.480 3.106 0.480 H3 A1B3U 35 A1B3U H1 H16 H 0 1 N N N N N N 25.831 7.586 10.407 5.689 1.472 1.156 H1 A1B3U 36 A1B3U H5 H17 H 0 1 N N N N N N 28.665 8.316 6.887 5.225 -2.744 -0.332 H5 A1B3U 37 A1B3U H4 H18 H 0 1 N N N N N N 26.850 7.900 8.480 5.475 -0.320 -0.001 H4 A1B3U 38 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1B3U C S SING N N 1 A1B3U S C1 SING N N 2 A1B3U C1 C2 DOUB Y N 3 A1B3U C2 C3 SING Y N 4 A1B3U C3 N DOUB Y N 5 A1B3U N C4 SING Y N 6 A1B3U C4 C5 DOUB Y N 7 A1B3U C1 C5 SING Y N 8 A1B3U C5 N1 SING N N 9 A1B3U N1 C6 SING N N 10 A1B3U O C6 DOUB N N 11 A1B3U C6 N2 SING N N 12 A1B3U N2 C7 SING N N 13 A1B3U C7 C8 SING N N 14 A1B3U C8 C9 SING N N 15 A1B3U C9 C10 SING N N 16 A1B3U C10 C11 SING N N 17 A1B3U N3 C11 SING N N 18 A1B3U C11 O1 DOUB N N 19 A1B3U C12 C10 SING N N 20 A1B3U N2 C12 SING N N 21 A1B3U N1 H7 SING N N 22 A1B3U N3 H14 SING N N 23 A1B3U N3 H15 SING N N 24 A1B3U C4 H6 SING N N 25 A1B3U C7 H8 SING N N 26 A1B3U C7 H9 SING N N 27 A1B3U C8 H10 SING N N 28 A1B3U C8 H11 SING N N 29 A1B3U C10 H SING N N 30 A1B3U C9 H12 SING N N 31 A1B3U C9 H13 SING N N 32 A1B3U C12 H16 SING N N 33 A1B3U C12 H17 SING N N 34 A1B3U C H2 SING N N 35 A1B3U C H3 SING N N 36 A1B3U C H1 SING N N 37 A1B3U C3 H5 SING N N 38 A1B3U C2 H4 SING N N 39 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1B3U SMILES ACDLabs 14.52 "O=C(Nc1cnccc1SC)N1CCCC(C1)C(N)=O" A1B3U InChI InChI 1.06 "InChI=1S/C13H18N4O2S/c1-20-11-4-5-15-7-10(11)16-13(19)17-6-2-3-9(8-17)12(14)18/h4-5,7,9H,2-3,6,8H2,1H3,(H2,14,18)(H,16,19)/t9-/m0/s1" A1B3U InChIKey InChI 1.06 BIZUKHNXHJNAGE-VIFPVBQESA-N A1B3U SMILES_CANONICAL CACTVS 3.385 "CSc1ccncc1NC(=O)N2CCC[C@@H](C2)C(N)=O" A1B3U SMILES CACTVS 3.385 "CSc1ccncc1NC(=O)N2CCC[CH](C2)C(N)=O" A1B3U SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "CSc1ccncc1NC(=O)N2CCC[C@@H](C2)C(=O)N" A1B3U SMILES "OpenEye OEToolkits" 3.1.0.0 "CSc1ccncc1NC(=O)N2CCCC(C2)C(=O)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1B3U "SYSTEMATIC NAME" ACDLabs 14.52 "(3S)-N~1~-[4-(methylsulfanyl)pyridin-3-yl]piperidine-1,3-dicarboxamide" A1B3U "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "(3~{S})-~{N}1-(4-methylsulfanylpyridin-3-yl)piperidine-1,3-dicarboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1B3U "Create component" 2025-03-21 RCSB A1B3U "Initial release" 2025-04-02 RCSB #