data_A1B40 # _chem_comp.id A1B40 _chem_comp.name "(1R,5R)-3-{[2-(methylsulfanyl)phenyl]acetyl}-3-azabicyclo[3.1.0]hexane-1-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C15 H18 N2 O2 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-03-24 _chem_comp.pdbx_modified_date 2025-03-28 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 290.381 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1B40 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7I6C _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1B40 N1 N1 N 0 1 N N N N N N 10.786 15.626 17.332 4.302 1.230 1.857 N1 A1B40 1 A1B40 C4 C1 C 0 1 Y N N N N N 5.787 12.997 25.539 -4.445 -1.727 0.621 C4 A1B40 2 A1B40 C5 C2 C 0 1 Y N N N N N 6.631 13.966 25.022 -3.181 -1.941 0.103 C5 A1B40 3 A1B40 C6 C3 C 0 1 Y N N N N N 7.658 13.627 24.139 -2.408 -0.871 -0.302 C6 A1B40 4 A1B40 C7 C4 C 0 1 N N N N N N 8.679 14.675 23.747 -1.031 -1.106 -0.867 C7 A1B40 5 A1B40 C8 C5 C 0 1 N N N N N N 8.278 15.339 22.444 -0.008 -0.967 0.230 C8 A1B40 6 A1B40 C10 C6 C 0 1 N N R N N N 11.334 15.728 20.413 3.206 -0.601 -1.392 C10 A1B40 7 A1B40 C13 C7 C 0 1 N N N N N N 10.227 16.577 18.070 4.011 1.030 0.556 C13 A1B40 8 A1B40 O1 O1 O 0 1 N N N N N N 9.630 17.526 17.570 4.119 1.942 -0.236 O1 A1B40 9 A1B40 C12 C8 C 0 1 N N R N N N 10.271 16.422 19.583 3.551 -0.326 0.086 C12 A1B40 10 A1B40 C11 C9 C 0 1 N N N N N N 11.260 17.230 20.387 4.481 -1.181 -0.776 C11 A1B40 11 A1B40 C9 C10 C 0 1 N N N N N N 10.641 15.047 21.588 1.922 -1.457 -1.349 C9 A1B40 12 A1B40 C14 C11 C 0 1 N N N N N N 8.925 16.188 20.262 2.432 -1.021 0.892 C14 A1B40 13 A1B40 N N2 N 0 1 N N N N N N 9.250 15.508 21.516 1.301 -1.135 -0.043 N A1B40 14 A1B40 O O2 O 0 1 N N N N N N 7.110 15.669 22.241 -0.362 -0.703 1.360 O A1B40 15 A1B40 C1 C12 C 0 1 Y N N N N N 7.771 12.291 23.734 -2.903 0.423 -0.188 C1 A1B40 16 A1B40 S S1 S 0 1 N N N N N N 8.976 11.929 22.486 -1.918 1.792 -0.697 S A1B40 17 A1B40 C C13 C 0 1 N N N N N N 9.079 10.135 22.529 -2.986 3.216 -0.345 C A1B40 18 A1B40 C3 C14 C 0 1 Y N N N N N 5.940 11.678 25.170 -4.943 -0.442 0.731 C3 A1B40 19 A1B40 C2 C15 C 0 1 Y N N N N N 6.924 11.318 24.263 -4.174 0.634 0.333 C2 A1B40 20 A1B40 H15 H1 H 0 1 N N N N N N 10.728 15.668 16.335 4.599 2.103 2.159 H15 A1B40 21 A1B40 H14 H2 H 0 1 N N N N N N 11.265 14.867 17.773 4.212 0.502 2.491 H14 A1B40 22 A1B40 H6 H3 H 0 1 N N N N N N 5.007 13.276 26.233 -5.047 -2.566 0.937 H6 A1B40 23 A1B40 H7 H4 H 0 1 N N N N N N 6.493 14.999 25.306 -2.797 -2.947 0.015 H7 A1B40 24 A1B40 H8 H5 H 0 1 N N N N N N 8.740 15.436 24.539 -0.977 -2.109 -1.289 H8 A1B40 25 A1B40 H9 H6 H 0 1 N N N N N N 9.661 14.196 23.623 -0.829 -0.372 -1.647 H9 A1B40 26 A1B40 H H7 H 0 1 N N N N N N 12.165 15.214 19.907 3.282 0.175 -2.154 H A1B40 27 A1B40 H12 H8 H 0 1 N N N N N N 10.924 17.778 21.279 4.502 -2.253 -0.582 H12 A1B40 28 A1B40 H13 H9 H 0 1 N N N N N N 12.042 17.809 19.874 5.431 -0.740 -1.080 H13 A1B40 29 A1B40 H10 H10 H 0 1 N N N N N N 11.102 15.351 22.540 1.255 -1.183 -2.166 H10 A1B40 30 A1B40 H11 H11 H 0 1 N N N N N N 10.693 13.953 21.488 2.171 -2.517 -1.403 H11 A1B40 31 A1B40 H16 H12 H 0 1 N N N N N N 8.420 17.145 20.460 2.747 -2.020 1.196 H16 A1B40 32 A1B40 H17 H13 H 0 1 N N N N N N 8.280 15.556 19.635 2.167 -0.425 1.766 H17 A1B40 33 A1B40 H2 H14 H 0 1 N N N N N N 9.810 9.791 21.782 -3.219 3.240 0.720 H2 A1B40 34 A1B40 H1 H15 H 0 1 N N N N N N 9.397 9.810 23.531 -2.470 4.135 -0.625 H1 A1B40 35 A1B40 H3 H16 H 0 1 N N N N N N 8.092 9.706 22.301 -3.909 3.128 -0.917 H3 A1B40 36 A1B40 H5 H17 H 0 1 N N N N N N 5.291 10.923 25.589 -5.930 -0.278 1.136 H5 A1B40 37 A1B40 H4 H18 H 0 1 N N N N N N 7.035 10.285 23.966 -4.561 1.638 0.423 H4 A1B40 38 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1B40 C S SING N N 1 A1B40 S C1 SING N N 2 A1B40 C1 C2 DOUB Y N 3 A1B40 C2 C3 SING Y N 4 A1B40 C3 C4 DOUB Y N 5 A1B40 C4 C5 SING Y N 6 A1B40 C5 C6 DOUB Y N 7 A1B40 C1 C6 SING Y N 8 A1B40 C6 C7 SING N N 9 A1B40 C7 C8 SING N N 10 A1B40 O C8 DOUB N N 11 A1B40 C8 N SING N N 12 A1B40 N C9 SING N N 13 A1B40 C9 C10 SING N N 14 A1B40 C10 C11 SING N N 15 A1B40 C11 C12 SING N N 16 A1B40 C10 C12 SING N N 17 A1B40 C12 C13 SING N N 18 A1B40 N1 C13 SING N N 19 A1B40 C13 O1 DOUB N N 20 A1B40 C14 C12 SING N N 21 A1B40 N C14 SING N N 22 A1B40 N1 H15 SING N N 23 A1B40 N1 H14 SING N N 24 A1B40 C4 H6 SING N N 25 A1B40 C5 H7 SING N N 26 A1B40 C7 H8 SING N N 27 A1B40 C7 H9 SING N N 28 A1B40 C10 H SING N N 29 A1B40 C11 H12 SING N N 30 A1B40 C11 H13 SING N N 31 A1B40 C9 H10 SING N N 32 A1B40 C9 H11 SING N N 33 A1B40 C14 H16 SING N N 34 A1B40 C14 H17 SING N N 35 A1B40 C H2 SING N N 36 A1B40 C H1 SING N N 37 A1B40 C H3 SING N N 38 A1B40 C3 H5 SING N N 39 A1B40 C2 H4 SING N N 40 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1B40 SMILES ACDLabs 14.52 "O=C(Cc1ccccc1SC)N1CC2CC2(C1)C(N)=O" A1B40 InChI InChI 1.06 "InChI=1S/C15H18N2O2S/c1-20-12-5-3-2-4-10(12)6-13(18)17-8-11-7-15(11,9-17)14(16)19/h2-5,11H,6-9H2,1H3,(H2,16,19)/t11-,15-/m0/s1" A1B40 InChIKey InChI 1.06 AOZJVCFGWITQNR-NHYWBVRUSA-N A1B40 SMILES_CANONICAL CACTVS 3.385 "CSc1ccccc1CC(=O)N2C[C@@H]3C[C@@]3(C2)C(N)=O" A1B40 SMILES CACTVS 3.385 "CSc1ccccc1CC(=O)N2C[CH]3C[C]3(C2)C(N)=O" A1B40 SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "CSc1ccccc1CC(=O)N2C[C@@H]3C[C@@]3(C2)C(=O)N" A1B40 SMILES "OpenEye OEToolkits" 3.1.0.0 "CSc1ccccc1CC(=O)N2CC3CC3(C2)C(=O)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1B40 "SYSTEMATIC NAME" ACDLabs 14.52 "(1R,5R)-3-{[2-(methylsulfanyl)phenyl]acetyl}-3-azabicyclo[3.1.0]hexane-1-carboxamide" A1B40 "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "(1~{R},5~{R})-3-[2-(2-methylsulfanylphenyl)ethanoyl]-3-azabicyclo[3.1.0]hexane-1-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1B40 "Create component" 2025-03-24 RCSB A1B40 "Initial release" 2025-04-02 RCSB #