data_A1B42 # _chem_comp.id A1B42 _chem_comp.name "(3S)-N~1~-[2-(methylsulfanyl)-5-(2-oxopyrrolidin-1-yl)phenyl]piperidine-1,3-dicarboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C18 H24 N4 O3 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-03-24 _chem_comp.pdbx_modified_date 2025-03-28 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 376.473 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1B42 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7I6M _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1B42 N1 N1 N 0 1 N N N N N N 26.337 12.419 8.916 0.392 1.251 0.063 N1 A1B42 1 A1B42 N3 N2 N 0 1 N N N N N N 23.863 13.706 15.023 5.175 -3.043 -0.251 N3 A1B42 2 A1B42 C4 C1 C 0 1 Y N N N N N 28.664 10.215 7.003 -2.882 -0.437 0.128 C4 A1B42 3 A1B42 C5 C2 C 0 1 N N N N N N 30.158 9.159 5.263 -2.592 -2.943 0.400 C5 A1B42 4 A1B42 C6 C3 C 0 1 N N N N N N 31.412 9.635 4.510 -3.490 -4.123 -0.033 C6 A1B42 5 A1B42 C7 C4 C 0 1 N N N N N N 31.712 11.055 5.002 -4.905 -3.535 0.176 C7 A1B42 6 A1B42 C8 C5 C 0 1 N N N N N N 30.800 11.259 6.188 -4.706 -2.039 0.068 C8 A1B42 7 A1B42 C10 C6 C 0 1 Y N N N N N 26.990 11.264 8.420 -0.995 1.047 0.061 C10 A1B42 8 A1B42 C13 C7 C 0 1 N N N N N N 23.092 14.266 10.419 4.162 1.645 1.030 C13 A1B42 9 A1B42 C15 C8 C 0 1 N N S N N N 24.233 14.073 12.664 4.520 -0.745 0.386 C15 A1B42 10 A1B42 C17 C9 C 0 1 N N N N N N 25.581 14.310 11.967 3.469 -0.618 -0.721 C17 A1B42 11 A1B42 O2 O1 O 0 1 N N N N N N 24.761 15.676 14.375 6.714 -1.452 -0.118 O2 A1B42 12 A1B42 C16 C10 C 0 1 N N N N N N 24.288 14.568 14.099 5.549 -1.771 -0.012 C16 A1B42 13 A1B42 C14 C11 C 0 1 N N N N N N 23.133 14.785 11.863 5.202 0.609 0.594 C14 A1B42 14 A1B42 C12 C12 C 0 1 N N N N N N 24.460 14.392 9.756 3.108 1.798 -0.070 C12 A1B42 15 A1B42 N2 N3 N 0 1 N N N N N N 25.529 13.815 10.589 2.549 0.475 -0.378 N2 A1B42 16 A1B42 C11 C13 C 0 1 N N N N N N 26.377 12.793 10.222 1.218 0.267 -0.346 C11 A1B42 17 A1B42 O1 O2 O 0 1 N N N N N N 27.102 12.231 11.023 0.762 -0.808 -0.685 O1 A1B42 18 A1B42 C1 C14 C 0 1 Y N N N N N 26.501 9.993 8.772 -1.861 2.138 -0.009 C1 A1B42 19 A1B42 S S1 S 0 1 N N N N N N 25.104 9.867 9.853 -1.214 3.775 -0.096 S A1B42 20 A1B42 C C15 C 0 1 N N N N N N 24.858 8.089 10.002 -2.707 4.802 -0.169 C A1B42 21 A1B42 C9 C16 C 0 1 Y N N N N N 28.074 11.362 7.536 -1.508 -0.238 0.130 C9 A1B42 22 A1B42 C3 C17 C 0 1 Y N N N N N 28.169 8.971 7.364 -3.742 0.651 0.057 C3 A1B42 23 A1B42 C2 C18 C 0 1 Y N N N N N 27.099 8.858 8.236 -3.234 1.934 -0.011 C2 A1B42 24 A1B42 N N4 N 0 1 N N N N N N 29.819 10.293 6.146 -3.402 -1.737 0.191 N A1B42 25 A1B42 O O3 O 0 1 N N N N N N 30.942 12.080 7.086 -5.593 -1.231 -0.107 O A1B42 26 A1B42 H13 H1 H 0 1 N N N N N N 25.822 12.987 8.274 0.757 2.101 0.354 H13 A1B42 27 A1B42 H20 H2 H 0 1 N N N N N N 23.919 13.944 15.993 4.243 -3.299 -0.166 H20 A1B42 28 A1B42 H21 H3 H 0 1 N N N N N N 23.488 12.821 14.746 5.837 -3.704 -0.507 H21 A1B42 29 A1B42 H6 H4 H 0 1 N N N N N N 30.375 8.256 5.852 -2.324 -3.039 1.452 H6 A1B42 30 A1B42 H7 H5 H 0 1 N N N N N N 29.337 8.950 4.562 -1.693 -2.907 -0.216 H7 A1B42 31 A1B42 H8 H6 H 0 1 N N N N N N 32.261 8.971 4.730 -3.324 -4.376 -1.080 H8 A1B42 32 A1B42 H9 H7 H 0 1 N N N N N N 31.223 9.642 3.426 -3.329 -4.990 0.607 H9 A1B42 33 A1B42 H10 H8 H 0 1 N N N N N N 32.766 11.145 5.305 -5.583 -3.887 -0.601 H10 A1B42 34 A1B42 H11 H9 H 0 1 N N N N N N 31.493 11.791 4.215 -5.285 -3.798 1.163 H11 A1B42 35 A1B42 H16 H10 H 0 1 N N N N N N 22.359 14.853 9.846 3.682 1.312 1.950 H16 A1B42 36 A1B42 H17 H11 H 0 1 N N N N N N 22.791 13.208 10.425 4.653 2.603 1.201 H17 A1B42 37 A1B42 H H12 H 0 1 N N N N N N 24.023 12.993 12.668 4.036 -1.055 1.312 H A1B42 38 A1B42 H22 H13 H 0 1 N N N N N N 25.802 15.388 11.958 3.961 -0.397 -1.669 H22 A1B42 39 A1B42 H23 H14 H 0 1 N N N N N N 26.373 13.778 12.515 2.914 -1.552 -0.807 H23 A1B42 40 A1B42 H18 H15 H 0 1 N N N N N N 23.336 15.866 11.853 5.664 0.930 -0.340 H18 A1B42 41 A1B42 H19 H16 H 0 1 N N N N N N 22.160 14.599 12.341 5.967 0.516 1.364 H19 A1B42 42 A1B42 H14 H17 H 0 1 N N N N N N 24.677 15.457 9.587 2.313 2.459 0.275 H14 A1B42 43 A1B42 H15 H18 H 0 1 N N N N N N 24.437 13.865 8.791 3.570 2.219 -0.964 H15 A1B42 44 A1B42 H2 H19 H 0 1 N N N N N N 24.001 7.891 10.662 -3.306 4.635 0.726 H2 A1B42 45 A1B42 H3 H20 H 0 1 N N N N N N 24.661 7.662 9.008 -2.423 5.852 -0.226 H3 A1B42 46 A1B42 H1 H21 H 0 1 N N N N N N 25.762 7.628 10.427 -3.289 4.534 -1.051 H1 A1B42 47 A1B42 H12 H22 H 0 1 N N N N N N 28.456 12.335 7.265 -0.840 -1.085 0.185 H12 A1B42 48 A1B42 H5 H23 H 0 1 N N N N N N 28.624 8.079 6.960 -4.811 0.494 0.055 H5 A1B42 49 A1B42 H4 H24 H 0 1 N N N N N N 26.726 7.880 8.502 -3.905 2.778 -0.065 H4 A1B42 50 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1B42 C S SING N N 1 A1B42 S C1 SING N N 2 A1B42 C1 C2 SING Y N 3 A1B42 C2 C3 DOUB Y N 4 A1B42 C3 C4 SING Y N 5 A1B42 N C4 SING N N 6 A1B42 N C5 SING N N 7 A1B42 C5 C6 SING N N 8 A1B42 C6 C7 SING N N 9 A1B42 C7 C8 SING N N 10 A1B42 C8 N SING N N 11 A1B42 O C8 DOUB N N 12 A1B42 C4 C9 DOUB Y N 13 A1B42 C9 C10 SING Y N 14 A1B42 C1 C10 DOUB Y N 15 A1B42 C10 N1 SING N N 16 A1B42 N1 C11 SING N N 17 A1B42 O1 C11 DOUB N N 18 A1B42 C11 N2 SING N N 19 A1B42 N2 C12 SING N N 20 A1B42 C12 C13 SING N N 21 A1B42 C13 C14 SING N N 22 A1B42 C14 C15 SING N N 23 A1B42 C15 C16 SING N N 24 A1B42 N3 C16 SING N N 25 A1B42 C16 O2 DOUB N N 26 A1B42 C17 C15 SING N N 27 A1B42 N2 C17 SING N N 28 A1B42 N1 H13 SING N N 29 A1B42 N3 H20 SING N N 30 A1B42 N3 H21 SING N N 31 A1B42 C5 H6 SING N N 32 A1B42 C5 H7 SING N N 33 A1B42 C6 H8 SING N N 34 A1B42 C6 H9 SING N N 35 A1B42 C7 H10 SING N N 36 A1B42 C7 H11 SING N N 37 A1B42 C13 H16 SING N N 38 A1B42 C13 H17 SING N N 39 A1B42 C15 H SING N N 40 A1B42 C17 H22 SING N N 41 A1B42 C17 H23 SING N N 42 A1B42 C14 H18 SING N N 43 A1B42 C14 H19 SING N N 44 A1B42 C12 H14 SING N N 45 A1B42 C12 H15 SING N N 46 A1B42 C H2 SING N N 47 A1B42 C H3 SING N N 48 A1B42 C H1 SING N N 49 A1B42 C9 H12 SING N N 50 A1B42 C3 H5 SING N N 51 A1B42 C2 H4 SING N N 52 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1B42 SMILES ACDLabs 14.52 "O=C(Nc1cc(ccc1SC)N1CCCC1=O)N1CCCC(C1)C(N)=O" A1B42 InChI InChI 1.06 "InChI=1S/C18H24N4O3S/c1-26-15-7-6-13(22-9-3-5-16(22)23)10-14(15)20-18(25)21-8-2-4-12(11-21)17(19)24/h6-7,10,12H,2-5,8-9,11H2,1H3,(H2,19,24)(H,20,25)/t12-/m0/s1" A1B42 InChIKey InChI 1.06 BFTJLJDSJHXUFC-LBPRGKRZSA-N A1B42 SMILES_CANONICAL CACTVS 3.385 "CSc1ccc(cc1NC(=O)N2CCC[C@@H](C2)C(N)=O)N3CCCC3=O" A1B42 SMILES CACTVS 3.385 "CSc1ccc(cc1NC(=O)N2CCC[CH](C2)C(N)=O)N3CCCC3=O" A1B42 SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "CSc1ccc(cc1NC(=O)N2CCC[C@@H](C2)C(=O)N)N3CCCC3=O" A1B42 SMILES "OpenEye OEToolkits" 3.1.0.0 "CSc1ccc(cc1NC(=O)N2CCCC(C2)C(=O)N)N3CCCC3=O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1B42 "SYSTEMATIC NAME" ACDLabs 14.52 "(3S)-N~1~-[2-(methylsulfanyl)-5-(2-oxopyrrolidin-1-yl)phenyl]piperidine-1,3-dicarboxamide" A1B42 "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "(3~{S})-~{N}1-[2-methylsulfanyl-5-(2-oxidanylidenepyrrolidin-1-yl)phenyl]piperidine-1,3-dicarboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1B42 "Create component" 2025-03-24 RCSB A1B42 "Initial release" 2025-04-02 RCSB #