data_A1B4C # _chem_comp.id A1B4C _chem_comp.name "(3S)-N~1~-[2-(methylsulfanyl)pyridin-3-yl]piperidine-1,3-dicarboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H18 N4 O2 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-03-21 _chem_comp.pdbx_modified_date 2025-03-28 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 294.373 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1B4C _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7I5W _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1B4C N1 N1 N 0 1 N N N N N N 26.069 12.322 8.787 0.924 0.165 -0.040 N1 A1B4C 1 A1B4C N3 N2 N 0 1 N N N N N N 23.878 13.651 14.959 -5.232 -1.808 0.180 N3 A1B4C 2 A1B4C C4 C1 C 0 1 Y N N N N N 27.795 11.362 7.317 2.038 -1.970 -0.303 C4 A1B4C 3 A1B4C C5 C2 C 0 1 Y N N N N N 26.768 11.213 8.253 2.099 -0.596 -0.119 C5 A1B4C 4 A1B4C C6 C3 C 0 1 N N N N N N 26.200 12.716 10.081 -0.256 -0.441 0.196 C6 A1B4C 5 A1B4C C7 C4 C 0 1 N N N N N N 24.295 14.308 9.672 -1.347 1.749 0.114 C7 A1B4C 6 A1B4C C8 C5 C 0 1 N N N N N N 22.955 14.181 10.392 -2.408 2.122 -0.925 C8 A1B4C 7 A1B4C C10 C6 C 0 1 N N S N N N 24.180 14.031 12.594 -3.703 0.054 -0.380 C10 A1B4C 8 A1B4C O1 O1 O 0 1 N N N N N N 24.721 15.640 14.296 -5.974 0.283 0.222 O1 A1B4C 9 A1B4C C11 C7 C 0 1 N N N N N N 24.270 14.520 14.030 -5.051 -0.481 0.029 C11 A1B4C 10 A1B4C C9 C8 C 0 1 N N N N N N 23.052 14.730 11.818 -3.768 1.580 -0.478 C9 A1B4C 11 A1B4C C12 C9 C 0 1 N N N N N N 25.504 14.247 11.851 -2.657 -0.343 0.666 C12 A1B4C 12 A1B4C N2 N3 N 0 1 N N N N N N 25.400 13.750 10.476 -1.378 0.294 0.321 N2 A1B4C 13 A1B4C O O2 O 0 1 N N N N N N 27.019 12.211 10.844 -0.309 -1.652 0.297 O A1B4C 14 A1B4C C1 C10 C 0 1 Y N N N N N 26.399 9.916 8.645 3.350 0.018 -0.016 C1 A1B4C 15 A1B4C S S1 S 0 1 N N N N N N 25.027 9.738 9.741 3.452 1.762 0.218 S A1B4C 16 A1B4C C C11 C 0 1 N N N N N N 24.878 7.940 9.881 5.240 2.060 0.290 C A1B4C 17 A1B4C C3 C12 C 0 1 Y N N N N N 28.396 10.217 6.815 3.228 -2.683 -0.371 C3 A1B4C 18 A1B4C C2 C13 C 0 1 Y N N N N N 27.979 8.982 7.287 4.427 -2.010 -0.255 C2 A1B4C 19 A1B4C N N4 N 0 1 Y N N N N N 26.994 8.815 8.190 4.459 -0.700 -0.091 N A1B4C 20 A1B4C H7 H1 H 0 1 N N N N N N 25.454 12.836 8.188 0.961 1.128 -0.151 H7 A1B4C 21 A1B4C H14 H2 H 0 1 N N N N N N 23.941 13.892 15.927 -4.495 -2.418 0.026 H14 A1B4C 22 A1B4C H15 H3 H 0 1 N N N N N N 23.520 12.757 14.688 -6.100 -2.152 0.443 H15 A1B4C 23 A1B4C H6 H4 H 0 1 N N N N N N 28.112 12.342 6.993 1.086 -2.475 -0.387 H6 A1B4C 24 A1B4C H8 H5 H 0 1 N N N N N N 24.497 15.372 9.478 -0.362 2.045 -0.246 H8 A1B4C 25 A1B4C H9 H6 H 0 1 N N N N N N 24.240 13.766 8.717 -1.561 2.258 1.054 H9 A1B4C 26 A1B4C H10 H7 H 0 1 N N N N N N 22.192 14.748 9.838 -2.461 3.207 -1.018 H10 A1B4C 27 A1B4C H11 H8 H 0 1 N N N N N N 22.666 13.120 10.432 -2.142 1.687 -1.889 H11 A1B4C 28 A1B4C H H9 H 0 1 N N N N N N 23.967 12.952 12.609 -3.426 -0.361 -1.349 H A1B4C 29 A1B4C H12 H10 H 0 1 N N N N N N 23.258 15.810 11.776 -4.022 1.996 0.497 H12 A1B4C 30 A1B4C H13 H11 H 0 1 N N N N N N 22.097 14.559 12.337 -4.529 1.866 -1.204 H13 A1B4C 31 A1B4C H16 H12 H 0 1 N N N N N N 25.739 15.321 11.832 -2.979 -0.006 1.651 H16 A1B4C 32 A1B4C H17 H13 H 0 1 N N N N N N 26.306 13.705 12.373 -2.538 -1.426 0.671 H17 A1B4C 33 A1B4C H2 H14 H 0 1 N N N N N N 24.042 7.692 10.551 5.668 1.500 1.121 H2 A1B4C 34 A1B4C H3 H15 H 0 1 N N N N N N 24.691 7.509 8.886 5.701 1.735 -0.643 H3 A1B4C 35 A1B4C H1 H16 H 0 1 N N N N N N 25.811 7.526 10.291 5.425 3.124 0.435 H1 A1B4C 36 A1B4C H5 H17 H 0 1 N N N N N N 29.175 10.286 6.070 3.215 -3.753 -0.513 H5 A1B4C 37 A1B4C H4 H18 H 0 1 N N N N N N 28.474 8.100 6.908 5.354 -2.562 -0.307 H4 A1B4C 38 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1B4C C S SING N N 1 A1B4C S C1 SING N N 2 A1B4C C1 N DOUB Y N 3 A1B4C N C2 SING Y N 4 A1B4C C2 C3 DOUB Y N 5 A1B4C C3 C4 SING Y N 6 A1B4C C4 C5 DOUB Y N 7 A1B4C C1 C5 SING Y N 8 A1B4C C5 N1 SING N N 9 A1B4C N1 C6 SING N N 10 A1B4C O C6 DOUB N N 11 A1B4C C6 N2 SING N N 12 A1B4C N2 C7 SING N N 13 A1B4C C7 C8 SING N N 14 A1B4C C8 C9 SING N N 15 A1B4C C9 C10 SING N N 16 A1B4C C10 C11 SING N N 17 A1B4C N3 C11 SING N N 18 A1B4C C11 O1 DOUB N N 19 A1B4C C12 C10 SING N N 20 A1B4C N2 C12 SING N N 21 A1B4C N1 H7 SING N N 22 A1B4C N3 H14 SING N N 23 A1B4C N3 H15 SING N N 24 A1B4C C4 H6 SING N N 25 A1B4C C7 H8 SING N N 26 A1B4C C7 H9 SING N N 27 A1B4C C8 H10 SING N N 28 A1B4C C8 H11 SING N N 29 A1B4C C10 H SING N N 30 A1B4C C9 H12 SING N N 31 A1B4C C9 H13 SING N N 32 A1B4C C12 H16 SING N N 33 A1B4C C12 H17 SING N N 34 A1B4C C H2 SING N N 35 A1B4C C H3 SING N N 36 A1B4C C H1 SING N N 37 A1B4C C3 H5 SING N N 38 A1B4C C2 H4 SING N N 39 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1B4C SMILES ACDLabs 14.52 "O=C(Nc1cccnc1SC)N1CCCC(C1)C(N)=O" A1B4C InChI InChI 1.06 "InChI=1S/C13H18N4O2S/c1-20-12-10(5-2-6-15-12)16-13(19)17-7-3-4-9(8-17)11(14)18/h2,5-6,9H,3-4,7-8H2,1H3,(H2,14,18)(H,16,19)/t9-/m0/s1" A1B4C InChIKey InChI 1.06 FBDCWTCKYSQXKW-VIFPVBQESA-N A1B4C SMILES_CANONICAL CACTVS 3.385 "CSc1ncccc1NC(=O)N2CCC[C@@H](C2)C(N)=O" A1B4C SMILES CACTVS 3.385 "CSc1ncccc1NC(=O)N2CCC[CH](C2)C(N)=O" A1B4C SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "CSc1c(cccn1)NC(=O)N2CCC[C@@H](C2)C(=O)N" A1B4C SMILES "OpenEye OEToolkits" 3.1.0.0 "CSc1c(cccn1)NC(=O)N2CCCC(C2)C(=O)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1B4C "SYSTEMATIC NAME" ACDLabs 14.52 "(3S)-N~1~-[2-(methylsulfanyl)pyridin-3-yl]piperidine-1,3-dicarboxamide" A1B4C "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "(3~{S})-~{N}1-(2-methylsulfanylpyridin-3-yl)piperidine-1,3-dicarboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1B4C "Create component" 2025-03-21 RCSB A1B4C "Initial release" 2025-04-02 RCSB #