data_A1B4G # _chem_comp.id A1B4G _chem_comp.name "(3S)-1-[(5-fluoro-2-methyl-1H-1,3-benzimidazol-4-yl)methyl]-6-oxopiperidine-3-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C15 H17 F N4 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-03-24 _chem_comp.pdbx_modified_date 2025-03-28 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 304.319 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1B4G _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7I67 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1B4G N1 N1 N 0 1 N N N N N N 9.348 15.618 21.915 0.908 -0.474 0.919 N1 A1B4G 1 A1B4G N3 N2 N 0 1 Y N N N N N 5.708 12.403 25.486 -4.040 -0.051 -1.031 N3 A1B4G 2 A1B4G C4 C1 C 0 1 N N N N N N 8.095 15.301 22.599 -0.160 0.190 1.669 C4 A1B4G 3 A1B4G C5 C2 C 0 1 N N N N N N 9.157 15.852 20.477 2.123 0.283 0.644 C5 A1B4G 4 A1B4G C6 C3 C 0 1 N N S N N N 10.495 15.838 19.729 2.901 -0.354 -0.508 C6 A1B4G 5 A1B4G C7 C4 C 0 1 N N N N N N 10.348 16.243 18.273 4.256 0.297 -0.624 C7 A1B4G 6 A1B4G C8 C5 C 0 1 N N N N N N 11.453 16.775 20.483 3.073 -1.850 -0.217 C8 A1B4G 7 A1B4G C10 C6 C 0 1 N N N N N N 10.488 15.783 22.631 0.710 -1.736 0.534 C10 A1B4G 8 A1B4G C13 C7 C 0 1 Y N N N N N 7.497 11.242 24.108 -2.806 2.180 -1.064 C13 A1B4G 9 A1B4G F F1 F 0 1 N N N N N N 9.520 12.976 21.672 0.214 2.847 0.839 F A1B4G 10 A1B4G C11 C8 C 0 1 Y N N N N N 8.651 12.796 22.700 -0.856 2.190 0.338 C11 A1B4G 11 A1B4G C12 C9 C 0 1 Y N N N N N 8.480 11.505 23.166 -1.710 2.837 -0.546 C12 A1B4G 12 A1B4G C14 C10 C 0 1 Y N N N N N 6.751 12.314 24.573 -3.059 0.865 -0.702 C14 A1B4G 13 A1B4G C2 C11 C 0 1 Y N N N N N 6.948 13.617 24.115 -2.198 0.205 0.192 C2 A1B4G 14 A1B4G N N3 N 0 1 Y N N N N N 6.054 14.482 24.733 -2.688 -1.050 0.360 N A1B4G 15 A1B4G C1 C12 C 0 1 Y N N N N N 5.335 13.712 25.548 -3.767 -1.197 -0.352 C1 A1B4G 16 A1B4G C C13 C 0 1 N N N N N N 4.244 14.196 26.436 -4.591 -2.458 -0.420 C A1B4G 17 A1B4G C3 C14 C 0 1 Y N N N N N 7.926 13.897 23.146 -1.092 0.884 0.710 C3 A1B4G 18 A1B4G O1 O1 O 0 1 N N N N N N 10.531 15.623 23.841 -0.324 -2.280 0.860 O1 A1B4G 19 A1B4G C9 C15 C 0 1 N N N N N N 11.717 16.246 21.890 1.697 -2.517 -0.286 C9 A1B4G 20 A1B4G O O2 O 0 1 N N N N N N 9.731 17.268 17.953 4.569 1.185 0.141 O A1B4G 21 A1B4G N2 N4 N 0 1 N N N N N N 10.958 15.466 17.391 5.119 -0.107 -1.577 N2 A1B4G 22 A1B4G H1 H1 H 0 1 N N N N N N 5.306 11.647 26.002 -4.787 0.098 -1.631 H1 A1B4G 23 A1B4G H6 H2 H 0 1 N N N N N N 7.277 15.476 21.884 -0.716 -0.551 2.244 H6 A1B4G 24 A1B4G H5 H3 H 0 1 N N N N N N 7.997 15.997 23.445 0.275 0.924 2.348 H5 A1B4G 25 A1B4G H8 H4 H 0 1 N N N N N N 8.509 15.062 20.068 1.857 1.306 0.377 H8 A1B4G 26 A1B4G H7 H5 H 0 1 N N N N N N 8.676 16.831 20.334 2.748 0.297 1.537 H7 A1B4G 27 A1B4G H H6 H 0 1 N N N N N N 10.905 14.818 19.770 2.349 -0.223 -1.439 H A1B4G 28 A1B4G H12 H7 H 0 1 N N N N N N 12.405 16.838 19.935 3.734 -2.295 -0.961 H12 A1B4G 29 A1B4G H11 H8 H 0 1 N N N N N N 11.002 17.776 20.551 3.496 -1.984 0.778 H11 A1B4G 30 A1B4G H16 H9 H 0 1 N N N N N N 7.319 10.239 24.466 -3.466 2.688 -1.752 H16 A1B4G 31 A1B4G H15 H10 H 0 1 N N N N N N 9.108 10.707 22.799 -1.515 3.860 -0.829 H15 A1B4G 32 A1B4G H3 H12 H 0 1 N N N N N N 4.126 15.283 26.314 -5.356 -2.435 0.356 H3 A1B4G 33 A1B4G H4 H13 H 0 1 N N N N N N 3.303 13.693 26.168 -5.067 -2.527 -1.398 H4 A1B4G 34 A1B4G H2 H14 H 0 1 N N N N N N 4.496 13.970 27.483 -3.945 -3.322 -0.269 H2 A1B4G 35 A1B4G H14 H15 H 0 1 N N N N N N 12.410 15.396 21.812 1.363 -2.552 -1.323 H14 A1B4G 36 A1B4G H13 H16 H 0 1 N N N N N N 12.187 17.050 22.475 1.766 -3.532 0.105 H13 A1B4G 37 A1B4G H10 H17 H 0 1 N N N N N N 10.932 15.698 16.419 4.868 -0.817 -2.188 H10 A1B4G 38 A1B4G H9 H18 H 0 1 N N N N N N 11.444 14.648 17.697 5.990 0.312 -1.651 H9 A1B4G 39 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1B4G C C1 SING N N 1 A1B4G C1 N DOUB Y N 2 A1B4G N C2 SING Y N 3 A1B4G C2 C3 DOUB Y N 4 A1B4G C4 C3 SING N N 5 A1B4G N1 C4 SING N N 6 A1B4G N1 C5 SING N N 7 A1B4G C5 C6 SING N N 8 A1B4G C7 C6 SING N N 9 A1B4G N2 C7 SING N N 10 A1B4G O C7 DOUB N N 11 A1B4G C6 C8 SING N N 12 A1B4G C8 C9 SING N N 13 A1B4G C9 C10 SING N N 14 A1B4G C10 N1 SING N N 15 A1B4G O1 C10 DOUB N N 16 A1B4G C3 C11 SING Y N 17 A1B4G C11 F SING N N 18 A1B4G C12 C11 DOUB Y N 19 A1B4G C13 C12 SING Y N 20 A1B4G C14 C13 DOUB Y N 21 A1B4G C2 C14 SING Y N 22 A1B4G N3 C14 SING Y N 23 A1B4G C1 N3 SING Y N 24 A1B4G N3 H1 SING N N 25 A1B4G C4 H6 SING N N 26 A1B4G C4 H5 SING N N 27 A1B4G C5 H8 SING N N 28 A1B4G C5 H7 SING N N 29 A1B4G C6 H SING N N 30 A1B4G C8 H12 SING N N 31 A1B4G C8 H11 SING N N 32 A1B4G C13 H16 SING N N 33 A1B4G C12 H15 SING N N 34 A1B4G C H3 SING N N 35 A1B4G C H4 SING N N 36 A1B4G C H2 SING N N 37 A1B4G C9 H14 SING N N 38 A1B4G C9 H13 SING N N 39 A1B4G N2 H10 SING N N 40 A1B4G N2 H9 SING N N 41 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1B4G SMILES ACDLabs 14.52 "NC(=O)C1CCC(=O)N(Cc2c3nc(C)[NH]c3ccc2F)C1" A1B4G InChI InChI 1.06 "InChI=1S/C15H17FN4O2/c1-8-18-12-4-3-11(16)10(14(12)19-8)7-20-6-9(15(17)22)2-5-13(20)21/h3-4,9H,2,5-7H2,1H3,(H2,17,22)(H,18,19)/t9-/m0/s1" A1B4G InChIKey InChI 1.06 CDTVOSIPPPNCHX-VIFPVBQESA-N A1B4G SMILES_CANONICAL CACTVS 3.385 "Cc1[nH]c2ccc(F)c(CN3C[C@H](CCC3=O)C(N)=O)c2n1" A1B4G SMILES CACTVS 3.385 "Cc1[nH]c2ccc(F)c(CN3C[CH](CCC3=O)C(N)=O)c2n1" A1B4G SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "Cc1[nH]c2ccc(c(c2n1)CN3C[C@H](CCC3=O)C(=O)N)F" A1B4G SMILES "OpenEye OEToolkits" 3.1.0.0 "Cc1[nH]c2ccc(c(c2n1)CN3CC(CCC3=O)C(=O)N)F" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1B4G "SYSTEMATIC NAME" ACDLabs 14.52 "(3S)-1-[(5-fluoro-2-methyl-1H-1,3-benzimidazol-4-yl)methyl]-6-oxopiperidine-3-carboxamide" A1B4G "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "(3~{S})-1-[(5-fluoranyl-2-methyl-1~{H}-benzimidazol-4-yl)methyl]-6-oxidanylidene-piperidine-3-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1B4G "Create component" 2025-03-24 RCSB A1B4G "Initial release" 2025-04-02 RCSB #