data_A1B4H # _chem_comp.id A1B4H _chem_comp.name "(3S)-1-[2-(methylsulfanyl)phenyl]-6-oxopiperidine-3-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H16 N2 O2 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-03-24 _chem_comp.pdbx_modified_date 2025-03-28 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 264.343 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1B4H _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7I66 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1B4H N1 N1 N 0 1 N N N N N N 11.498 13.564 18.121 4.916 0.180 -0.730 N1 A1B4H 1 A1B4H C4 C1 C 0 1 Y N N N N N 8.159 12.823 25.441 -2.791 -2.215 -1.179 C4 A1B4H 2 A1B4H C5 C2 C 0 1 Y N N N N N 9.045 13.396 24.544 -1.508 -2.010 -0.706 C5 A1B4H 3 A1B4H C6 C3 C 0 1 Y N N N N N 9.815 12.584 23.713 -1.136 -0.764 -0.226 C6 A1B4H 4 A1B4H C7 C4 C 0 1 N N N N N N 10.357 13.468 21.437 1.178 -0.111 -0.695 C7 A1B4H 5 A1B4H C8 C5 C 0 1 N N S N N N 11.531 13.843 20.519 2.579 -0.384 -0.146 C8 A1B4H 6 A1B4H C10 C6 C 0 1 N N N N N N 12.389 14.879 21.249 2.669 0.184 1.276 C10 A1B4H 7 A1B4H O1 O1 O 0 1 N N N N N N 12.300 13.247 24.520 -0.537 -1.104 2.250 O1 A1B4H 8 A1B4H C12 C7 C 0 1 N N N N N N 12.005 13.523 23.370 0.395 -0.775 1.548 C12 A1B4H 9 A1B4H C11 C8 C 0 1 N N N N N N 12.994 14.245 22.495 1.749 -0.637 2.183 C11 A1B4H 10 A1B4H C9 C9 C 0 1 N N N N N N 11.143 14.338 19.136 3.605 0.287 -1.024 C9 A1B4H 11 A1B4H O O2 O 0 1 N N N N N N 10.548 15.409 18.984 3.250 0.921 -1.995 O A1B4H 12 A1B4H N N2 N 0 1 N N N N N N 10.776 13.202 22.842 0.164 -0.555 0.253 N A1B4H 13 A1B4H C1 C10 C 0 1 Y N N N N N 9.695 11.193 23.808 -2.061 0.281 -0.221 C1 A1B4H 14 A1B4H S S1 S 0 1 N N N N N N 10.825 10.226 22.856 -1.599 1.866 0.394 S A1B4H 15 A1B4H C C11 C 0 1 N N N N N N 10.342 8.543 23.180 -3.117 2.840 0.193 C A1B4H 16 A1B4H C3 C12 C 0 1 Y N N N N N 8.021 11.448 25.509 -3.706 -1.178 -1.181 C3 A1B4H 17 A1B4H C2 C13 C 0 1 Y N N N N N 8.781 10.626 24.692 -3.346 0.067 -0.698 C2 A1B4H 18 A1B4H H11 H1 H 0 1 N N N N N N 11.285 13.840 17.184 5.199 -0.327 0.047 H11 A1B4H 19 A1B4H H10 H2 H 0 1 N N N N N N 11.979 12.704 18.292 5.576 0.608 -1.297 H10 A1B4H 20 A1B4H H6 H3 H 0 1 N N N N N N 7.572 13.454 26.092 -3.079 -3.186 -1.553 H6 A1B4H 21 A1B4H H7 H4 H 0 1 N N N N N N 9.139 14.470 24.488 -0.795 -2.822 -0.711 H7 A1B4H 22 A1B4H H9 H5 H 0 1 N N N N N N 9.876 12.563 21.038 1.062 0.959 -0.871 H9 A1B4H 23 A1B4H H8 H6 H 0 1 N N N N N N 9.635 14.298 21.438 1.048 -0.647 -1.634 H8 A1B4H 24 A1B4H H H7 H 0 1 N N N N N N 12.146 12.940 20.388 2.760 -1.458 -0.123 H A1B4H 25 A1B4H H13 H8 H 0 1 N N N N N N 13.195 15.223 20.584 3.696 0.114 1.634 H13 A1B4H 26 A1B4H H12 H9 H 0 1 N N N N N N 11.763 15.735 21.540 2.350 1.226 1.276 H12 A1B4H 27 A1B4H H15 H10 H 0 1 N N N N N N 13.761 13.524 22.176 2.180 -1.626 2.336 H15 A1B4H 28 A1B4H H14 H11 H 0 1 N N N N N N 13.464 15.041 23.092 1.648 -0.135 3.145 H14 A1B4H 29 A1B4H H2 H12 H 0 1 N N N N N N 10.998 7.859 22.622 -3.396 2.865 -0.860 H2 A1B4H 30 A1B4H H1 H13 H 0 1 N N N N N N 10.429 8.338 24.257 -3.920 2.384 0.771 H1 A1B4H 31 A1B4H H3 H14 H 0 1 N N N N N N 9.300 8.393 22.861 -2.946 3.856 0.548 H3 A1B4H 32 A1B4H H5 H15 H 0 1 N N N N N N 7.317 11.013 26.203 -4.707 -1.343 -1.551 H5 A1B4H 33 A1B4H H4 H16 H 0 1 N N N N N N 8.665 9.553 24.741 -4.064 0.874 -0.696 H4 A1B4H 34 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1B4H C S SING N N 1 A1B4H S C1 SING N N 2 A1B4H C1 C2 DOUB Y N 3 A1B4H C2 C3 SING Y N 4 A1B4H C3 C4 DOUB Y N 5 A1B4H C4 C5 SING Y N 6 A1B4H C5 C6 DOUB Y N 7 A1B4H C1 C6 SING Y N 8 A1B4H C6 N SING N N 9 A1B4H N C7 SING N N 10 A1B4H C7 C8 SING N N 11 A1B4H C9 C8 SING N N 12 A1B4H N1 C9 SING N N 13 A1B4H O C9 DOUB N N 14 A1B4H C8 C10 SING N N 15 A1B4H C10 C11 SING N N 16 A1B4H C11 C12 SING N N 17 A1B4H N C12 SING N N 18 A1B4H C12 O1 DOUB N N 19 A1B4H N1 H11 SING N N 20 A1B4H N1 H10 SING N N 21 A1B4H C4 H6 SING N N 22 A1B4H C5 H7 SING N N 23 A1B4H C7 H9 SING N N 24 A1B4H C7 H8 SING N N 25 A1B4H C8 H SING N N 26 A1B4H C10 H13 SING N N 27 A1B4H C10 H12 SING N N 28 A1B4H C11 H15 SING N N 29 A1B4H C11 H14 SING N N 30 A1B4H C H2 SING N N 31 A1B4H C H1 SING N N 32 A1B4H C H3 SING N N 33 A1B4H C3 H5 SING N N 34 A1B4H C2 H4 SING N N 35 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1B4H SMILES ACDLabs 14.52 "NC(=O)C1CCC(=O)N(C1)c1ccccc1SC" A1B4H InChI InChI 1.06 "InChI=1S/C13H16N2O2S/c1-18-11-5-3-2-4-10(11)15-8-9(13(14)17)6-7-12(15)16/h2-5,9H,6-8H2,1H3,(H2,14,17)/t9-/m0/s1" A1B4H InChIKey InChI 1.06 XFDPKKNIFJSWGV-VIFPVBQESA-N A1B4H SMILES_CANONICAL CACTVS 3.385 "CSc1ccccc1N2C[C@H](CCC2=O)C(N)=O" A1B4H SMILES CACTVS 3.385 "CSc1ccccc1N2C[CH](CCC2=O)C(N)=O" A1B4H SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "CSc1ccccc1N2C[C@H](CCC2=O)C(=O)N" A1B4H SMILES "OpenEye OEToolkits" 3.1.0.0 "CSc1ccccc1N2CC(CCC2=O)C(=O)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1B4H "SYSTEMATIC NAME" ACDLabs 14.52 "(3S)-1-[2-(methylsulfanyl)phenyl]-6-oxopiperidine-3-carboxamide" A1B4H "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "(3~{S})-1-(2-methylsulfanylphenyl)-6-oxidanylidene-piperidine-3-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1B4H "Create component" 2025-03-24 RCSB A1B4H "Initial release" 2025-04-02 RCSB #