data_A1B4J # _chem_comp.id A1B4J _chem_comp.name "(3S)-1-{[2-(methylsulfanyl)pyridin-3-yl]acetyl}piperidine-3-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C14 H19 N3 O2 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-03-24 _chem_comp.pdbx_modified_date 2025-03-28 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 293.385 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1B4J _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7I64 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1B4J N1 N1 N 0 1 N N N N N N 10.391 13.653 22.626 1.301 0.913 0.353 N1 A1B4J 1 A1B4J C4 C1 C 0 1 Y N N N N N 8.114 11.100 25.903 -3.092 2.013 -0.214 C4 A1B4J 2 A1B4J C5 C2 C 0 1 Y N N N N N 9.116 10.979 24.939 -2.426 0.893 0.248 C5 A1B4J 3 A1B4J C6 C3 C 0 1 N N N N N N 9.928 12.191 24.535 -1.098 1.029 0.947 C6 A1B4J 4 A1B4J C7 C4 C 0 1 N N N N N N 9.605 12.671 23.129 0.016 0.835 -0.049 C7 A1B4J 5 A1B4J C8 C5 C 0 1 N N N N N N 11.477 14.312 23.372 1.630 1.187 1.758 C8 A1B4J 6 A1B4J C10 C6 C 0 1 N N N N N N 12.681 14.676 21.193 3.789 0.003 1.342 C10 A1B4J 7 A1B4J C13 C7 C 0 1 N N N N N N 10.215 14.159 21.259 2.398 0.720 -0.605 C13 A1B4J 8 A1B4J O1 O1 O 0 1 N N N N N N 10.938 15.659 18.791 5.646 -0.294 -0.531 O1 A1B4J 9 A1B4J C12 C8 C 0 1 N N N N N N 11.388 14.527 19.025 4.534 -0.488 -0.973 C12 A1B4J 10 A1B4J N2 N2 N 0 1 N N N N N N 11.760 13.689 18.064 4.372 -0.810 -2.272 N2 A1B4J 11 A1B4J C11 C9 C 0 1 N N S N N N 11.511 14.008 20.450 3.333 -0.369 -0.071 C11 A1B4J 12 A1B4J C9 C10 C 0 1 N N N N N N 12.804 14.177 22.638 2.573 0.092 2.266 C9 A1B4J 13 A1B4J O O2 O 0 1 N N N N N N 8.684 12.184 22.487 -0.242 0.609 -1.212 O A1B4J 14 A1B4J C1 C11 C 0 1 Y N N N N N 9.332 9.673 24.444 -2.999 -0.362 0.059 C1 A1B4J 15 A1B4J S S1 S 0 1 N N N N N N 10.629 9.530 23.261 -2.163 -1.799 0.641 S A1B4J 16 A1B4J C C12 C 0 1 N N N N N N 10.739 7.749 23.031 -3.285 -3.144 0.167 C A1B4J 17 A1B4J C3 C13 C 0 1 Y N N N N N 7.388 9.989 26.305 -4.317 1.841 -0.848 C3 A1B4J 18 A1B4J C2 C14 C 0 1 Y N N N N N 7.692 8.768 25.752 -4.829 0.568 -0.996 C2 A1B4J 19 A1B4J N N3 N 0 1 Y N N N N N 8.663 8.586 24.842 -4.166 -0.484 -0.555 N A1B4J 20 A1B4J H6 H1 H 0 1 N N N N N N 7.903 12.065 26.339 -2.673 2.999 -0.082 H6 A1B4J 21 A1B4J H7 H2 H 0 1 N N N N N N 9.718 13.007 25.242 -1.021 2.022 1.390 H7 A1B4J 22 A1B4J H8 H3 H 0 1 N N N N N N 10.996 11.931 24.581 -1.021 0.275 1.730 H8 A1B4J 23 A1B4J H10 H4 H 0 1 N N N N N N 11.237 15.379 23.488 2.120 2.157 1.837 H10 A1B4J 24 A1B4J H9 H5 H 0 1 N N N N N N 11.566 13.846 24.364 0.717 1.188 2.354 H9 A1B4J 25 A1B4J H13 H6 H 0 1 N N N N N N 12.519 15.764 21.206 4.474 -0.758 1.714 H13 A1B4J 26 A1B4J H14 H7 H 0 1 N N N N N N 13.616 14.451 20.659 4.297 0.967 1.316 H14 A1B4J 27 A1B4J H17 H8 H 0 1 N N N N N N 9.938 15.223 21.301 1.992 0.413 -1.569 H17 A1B4J 28 A1B4J H18 H9 H 0 1 N N N N N N 9.413 13.591 20.765 2.951 1.653 -0.720 H18 A1B4J 29 A1B4J H16 H10 H 0 1 N N N N N N 11.682 13.962 17.105 5.145 -0.887 -2.852 H16 A1B4J 30 A1B4J H15 H11 H 0 1 N N N N N N 12.118 12.785 18.299 3.482 -0.965 -2.626 H15 A1B4J 31 A1B4J H H12 H 0 1 N N N N N N 11.735 12.933 20.390 2.803 -1.321 -0.042 H A1B4J 32 A1B4J H11 H13 H 0 1 N N N N N N 13.567 14.772 23.161 2.902 0.335 3.277 H11 A1B4J 33 A1B4J H12 H14 H 0 1 N N N N N N 13.105 13.119 22.630 2.051 -0.864 2.273 H12 A1B4J 34 A1B4J H2 H15 H 0 1 N N N N N N 11.529 7.521 22.300 -2.863 -4.098 0.483 H2 A1B4J 35 A1B4J H1 H16 H 0 1 N N N N N N 10.979 7.270 23.991 -4.252 -2.997 0.649 H1 A1B4J 36 A1B4J H3 H17 H 0 1 N N N N N N 9.776 7.367 22.661 -3.415 -3.144 -0.915 H3 A1B4J 37 A1B4J H5 H18 H 0 1 N N N N N N 6.600 10.081 27.038 -4.863 2.696 -1.220 H5 A1B4J 38 A1B4J H4 H19 H 0 1 N N N N N N 7.119 7.908 26.066 -5.781 0.431 -1.487 H4 A1B4J 39 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1B4J C S SING N N 1 A1B4J S C1 SING N N 2 A1B4J C1 N DOUB Y N 3 A1B4J N C2 SING Y N 4 A1B4J C2 C3 DOUB Y N 5 A1B4J C3 C4 SING Y N 6 A1B4J C4 C5 DOUB Y N 7 A1B4J C1 C5 SING Y N 8 A1B4J C5 C6 SING N N 9 A1B4J C6 C7 SING N N 10 A1B4J O C7 DOUB N N 11 A1B4J C7 N1 SING N N 12 A1B4J N1 C8 SING N N 13 A1B4J C8 C9 SING N N 14 A1B4J C9 C10 SING N N 15 A1B4J C10 C11 SING N N 16 A1B4J C11 C12 SING N N 17 A1B4J N2 C12 SING N N 18 A1B4J C12 O1 DOUB N N 19 A1B4J C13 C11 SING N N 20 A1B4J N1 C13 SING N N 21 A1B4J C4 H6 SING N N 22 A1B4J C6 H7 SING N N 23 A1B4J C6 H8 SING N N 24 A1B4J C8 H10 SING N N 25 A1B4J C8 H9 SING N N 26 A1B4J C10 H13 SING N N 27 A1B4J C10 H14 SING N N 28 A1B4J C13 H17 SING N N 29 A1B4J C13 H18 SING N N 30 A1B4J N2 H16 SING N N 31 A1B4J N2 H15 SING N N 32 A1B4J C11 H SING N N 33 A1B4J C9 H11 SING N N 34 A1B4J C9 H12 SING N N 35 A1B4J C H2 SING N N 36 A1B4J C H1 SING N N 37 A1B4J C H3 SING N N 38 A1B4J C3 H5 SING N N 39 A1B4J C2 H4 SING N N 40 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1B4J SMILES ACDLabs 14.52 "O=C(Cc1cccnc1SC)N1CCCC(C1)C(N)=O" A1B4J InChI InChI 1.06 "InChI=1S/C14H19N3O2S/c1-20-14-10(4-2-6-16-14)8-12(18)17-7-3-5-11(9-17)13(15)19/h2,4,6,11H,3,5,7-9H2,1H3,(H2,15,19)/t11-/m0/s1" A1B4J InChIKey InChI 1.06 OEHCNOCXCMBJIE-NSHDSACASA-N A1B4J SMILES_CANONICAL CACTVS 3.385 "CSc1ncccc1CC(=O)N2CCC[C@@H](C2)C(N)=O" A1B4J SMILES CACTVS 3.385 "CSc1ncccc1CC(=O)N2CCC[CH](C2)C(N)=O" A1B4J SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "CSc1c(cccn1)CC(=O)N2CCC[C@@H](C2)C(=O)N" A1B4J SMILES "OpenEye OEToolkits" 3.1.0.0 "CSc1c(cccn1)CC(=O)N2CCCC(C2)C(=O)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1B4J "SYSTEMATIC NAME" ACDLabs 14.52 "(3S)-1-{[2-(methylsulfanyl)pyridin-3-yl]acetyl}piperidine-3-carboxamide" A1B4J "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "(3~{S})-1-[2-(2-methylsulfanylpyridin-3-yl)ethanoyl]piperidine-3-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1B4J "Create component" 2025-03-24 RCSB A1B4J "Initial release" 2025-04-02 RCSB #