data_A1B4K # _chem_comp.id A1B4K _chem_comp.name "(3S)-1-{[3-(methylsulfanyl)pyridin-2-yl]acetyl}piperidine-3-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C14 H19 N3 O2 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-03-24 _chem_comp.pdbx_modified_date 2025-03-28 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 293.385 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1B4K _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7I63 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1B4K N1 N1 N 0 1 N N N N N N 10.121 13.545 22.468 1.310 0.787 0.544 N1 A1B4K 1 A1B4K C4 C1 C 0 1 Y N N N N N 7.166 10.001 26.171 -4.140 2.070 -0.477 C4 A1B4K 2 A1B4K C5 C2 C 0 1 Y N N N N N 8.752 10.983 24.824 -2.415 0.813 0.391 C5 A1B4K 3 A1B4K C6 C3 C 0 1 N N N N N N 9.418 12.276 24.445 -1.096 0.763 1.119 C6 A1B4K 4 A1B4K C7 C4 C 0 1 N N N N N N 9.283 12.609 22.971 0.031 0.819 0.120 C7 A1B4K 5 A1B4K C8 C5 C 0 1 N N N N N N 11.180 14.198 23.258 1.621 0.698 1.978 C8 A1B4K 6 A1B4K C10 C6 C 0 1 N N N N N N 12.288 14.860 21.126 3.783 -0.354 1.304 C10 A1B4K 7 A1B4K C13 C7 C 0 1 N N N N N N 9.927 14.087 21.117 2.419 0.835 -0.418 C13 A1B4K 8 A1B4K O1 O1 O 0 1 N N N N N N 10.752 15.913 18.828 5.664 -0.183 -0.560 O1 A1B4K 9 A1B4K C12 C8 C 0 1 N N N N N N 11.050 14.720 18.947 4.557 -0.254 -1.050 C12 A1B4K 10 A1B4K N2 N2 N 0 1 N N N N N N 11.265 13.925 17.913 4.412 -0.240 -2.390 N2 A1B4K 11 A1B4K C11 C9 C 0 1 N N S N N N 11.236 14.091 20.317 3.345 -0.359 -0.162 C11 A1B4K 12 A1B4K C9 C10 C 0 1 N N N N N N 12.490 14.232 22.502 2.555 -0.494 2.206 C9 A1B4K 13 A1B4K O O2 O 0 1 N N N N N N 8.424 12.072 22.289 -0.213 0.892 -1.066 O A1B4K 14 A1B4K C1 C11 C 0 1 Y N N N N N 9.214 9.716 24.365 -3.023 -0.369 -0.014 C1 A1B4K 15 A1B4K S S1 S 0 1 N N N N N N 10.500 9.592 23.160 -2.259 -1.924 0.309 S A1B4K 16 A1B4K C C12 C 0 1 N N N N N N 10.777 7.833 23.020 -3.427 -3.110 -0.413 C A1B4K 17 A1B4K N N3 N 0 1 Y N N N N N 7.739 11.113 25.695 -2.986 1.977 0.155 N A1B4K 18 A1B4K C3 C13 C 0 1 Y N N N N N 7.552 8.735 25.805 -4.803 0.939 -0.916 C3 A1B4K 19 A1B4K C2 C14 C 0 1 Y N N N N N 8.583 8.590 24.890 -4.242 -0.306 -0.686 C2 A1B4K 20 A1B4K H6 H1 H 0 1 N N N N N N 6.358 10.105 26.880 -4.575 3.043 -0.651 H6 A1B4K 21 A1B4K H7 H2 H 0 1 N N N N N N 8.962 13.088 25.030 -1.023 1.613 1.797 H7 A1B4K 22 A1B4K H8 H3 H 0 1 N N N N N N 10.488 12.203 24.690 -1.031 -0.164 1.689 H8 A1B4K 23 A1B4K H10 H4 H 0 1 N N N N N N 10.872 15.229 23.487 2.112 1.615 2.302 H10 A1B4K 24 A1B4K H9 H5 H 0 1 N N N N N N 11.322 13.641 24.196 0.700 0.555 2.543 H9 A1B4K 25 A1B4K H13 H6 H 0 1 N N N N N N 11.955 15.901 21.252 4.462 -1.189 1.483 H13 A1B4K 26 A1B4K H14 H7 H 0 1 N N N N N N 13.243 14.844 20.580 4.293 0.583 1.528 H14 A1B4K 27 A1B4K H17 H8 H 0 1 N N N N N N 9.554 15.119 21.196 2.025 0.781 -1.433 H17 A1B4K 28 A1B4K H18 H9 H 0 1 N N N N N N 9.187 13.469 20.587 2.976 1.763 -0.288 H18 A1B4K 29 A1B4K H16 H10 H 0 1 N N N N N N 11.189 14.283 16.982 5.193 -0.172 -2.962 H16 A1B4K 30 A1B4K H15 H11 H 0 1 N N N N N N 11.504 12.965 18.061 3.527 -0.297 -2.783 H15 A1B4K 31 A1B4K H H12 H 0 1 N N N N N N 11.576 13.053 20.190 2.813 -1.285 -0.380 H A1B4K 32 A1B4K H11 H13 H 0 1 N N N N N N 13.221 14.827 23.069 2.871 -0.514 3.250 H11 A1B4K 33 A1B4K H12 H14 H 0 1 N N N N N N 12.867 13.206 22.381 2.031 -1.419 1.967 H12 A1B4K 34 A1B4K H2 H15 H 0 1 N N N N N N 11.572 7.644 22.283 -3.051 -4.123 -0.269 H2 A1B4K 35 A1B4K H1 H16 H 0 1 N N N N N N 11.081 7.431 23.998 -4.396 -3.009 0.076 H1 A1B4K 36 A1B4K H3 H17 H 0 1 N N N N N N 9.849 7.341 22.693 -3.535 -2.910 -1.479 H3 A1B4K 37 A1B4K H5 H18 H 0 1 N N N N N N 7.061 7.868 26.222 -5.747 1.026 -1.433 H5 A1B4K 38 A1B4K H4 H19 H 0 1 N N N N N N 8.898 7.603 24.584 -4.740 -1.207 -1.014 H4 A1B4K 39 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1B4K C S SING N N 1 A1B4K S C1 SING N N 2 A1B4K C1 C2 DOUB Y N 3 A1B4K C2 C3 SING Y N 4 A1B4K C3 C4 DOUB Y N 5 A1B4K C4 N SING Y N 6 A1B4K N C5 DOUB Y N 7 A1B4K C1 C5 SING Y N 8 A1B4K C5 C6 SING N N 9 A1B4K C6 C7 SING N N 10 A1B4K O C7 DOUB N N 11 A1B4K C7 N1 SING N N 12 A1B4K N1 C8 SING N N 13 A1B4K C8 C9 SING N N 14 A1B4K C9 C10 SING N N 15 A1B4K C10 C11 SING N N 16 A1B4K C11 C12 SING N N 17 A1B4K N2 C12 SING N N 18 A1B4K C12 O1 DOUB N N 19 A1B4K C13 C11 SING N N 20 A1B4K N1 C13 SING N N 21 A1B4K C4 H6 SING N N 22 A1B4K C6 H7 SING N N 23 A1B4K C6 H8 SING N N 24 A1B4K C8 H10 SING N N 25 A1B4K C8 H9 SING N N 26 A1B4K C10 H13 SING N N 27 A1B4K C10 H14 SING N N 28 A1B4K C13 H17 SING N N 29 A1B4K C13 H18 SING N N 30 A1B4K N2 H16 SING N N 31 A1B4K N2 H15 SING N N 32 A1B4K C11 H SING N N 33 A1B4K C9 H11 SING N N 34 A1B4K C9 H12 SING N N 35 A1B4K C H2 SING N N 36 A1B4K C H1 SING N N 37 A1B4K C H3 SING N N 38 A1B4K C3 H5 SING N N 39 A1B4K C2 H4 SING N N 40 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1B4K SMILES ACDLabs 14.52 "O=C(Cc1ncccc1SC)N1CCCC(C1)C(N)=O" A1B4K InChI InChI 1.06 "InChI=1S/C14H19N3O2S/c1-20-12-5-2-6-16-11(12)8-13(18)17-7-3-4-10(9-17)14(15)19/h2,5-6,10H,3-4,7-9H2,1H3,(H2,15,19)/t10-/m0/s1" A1B4K InChIKey InChI 1.06 MYIKGEYXRPOTHW-JTQLQIEISA-N A1B4K SMILES_CANONICAL CACTVS 3.385 "CSc1cccnc1CC(=O)N2CCC[C@@H](C2)C(N)=O" A1B4K SMILES CACTVS 3.385 "CSc1cccnc1CC(=O)N2CCC[CH](C2)C(N)=O" A1B4K SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "CSc1cccnc1CC(=O)N2CCC[C@@H](C2)C(=O)N" A1B4K SMILES "OpenEye OEToolkits" 3.1.0.0 "CSc1cccnc1CC(=O)N2CCCC(C2)C(=O)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1B4K "SYSTEMATIC NAME" ACDLabs 14.52 "(3S)-1-{[3-(methylsulfanyl)pyridin-2-yl]acetyl}piperidine-3-carboxamide" A1B4K "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "(3~{S})-1-[2-(3-methylsulfanylpyridin-2-yl)ethanoyl]piperidine-3-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1B4K "Create component" 2025-03-24 RCSB A1B4K "Initial release" 2025-04-02 RCSB #