data_A1B59 # _chem_comp.id A1B59 _chem_comp.name "(3S)-1-{[5-cyclopropyl-2-(methylsulfanyl)phenyl]acetyl}piperidine-3-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C18 H24 N2 O2 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-03-24 _chem_comp.pdbx_modified_date 2025-03-28 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 332.460 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1B59 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7I7O _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1B59 N1 N1 N 0 1 N N N N N N 11.560 13.651 17.796 -4.919 1.202 -2.371 N1 A1B59 1 A1B59 C4 C1 C 0 1 Y N N N N N 6.804 10.237 26.081 3.641 1.160 0.264 C4 A1B59 2 A1B59 C5 C2 C 0 1 N N N N N N 5.855 10.450 27.239 4.354 2.480 0.400 C5 A1B59 3 A1B59 C6 C3 C 0 1 N N N N N N 4.443 9.936 27.203 4.732 3.215 -0.887 C6 A1B59 4 A1B59 C7 C4 C 0 1 N N N N N N 4.692 11.395 27.111 5.817 2.541 -0.045 C7 A1B59 5 A1B59 C8 C5 C 0 1 Y N N N N N 7.397 11.335 25.482 2.381 0.997 0.812 C8 A1B59 6 A1B59 C10 C6 C 0 1 N N N N N N 9.110 12.505 24.175 0.352 -0.388 1.286 C10 A1B59 7 A1B59 C13 C7 C 0 1 N N N N N N 12.289 14.409 22.360 -3.446 0.426 2.305 C13 A1B59 8 A1B59 C15 C8 C 0 1 N N S N N N 11.149 14.083 20.129 -4.039 0.830 -0.090 C15 A1B59 9 A1B59 C17 C9 C 0 1 N N N N N N 9.807 14.241 20.851 -3.022 -0.226 -0.534 C17 A1B59 10 A1B59 O1 O1 O 0 1 N N N N N N 10.602 15.598 18.349 -6.305 0.657 -0.726 O1 A1B59 11 A1B59 C16 C10 C 0 1 N N N N N N 11.086 14.513 18.674 -5.169 0.890 -1.084 C16 A1B59 12 A1B59 C14 C11 C 0 1 N N N N N N 12.161 14.920 20.921 -4.589 0.455 1.288 C14 A1B59 13 A1B59 C12 C12 C 0 1 N N N N N N 10.935 14.410 23.046 -2.423 -0.635 1.888 C12 A1B59 14 A1B59 N N2 N 0 1 N N N N N N 9.913 13.740 22.224 -1.996 -0.364 0.509 N A1B59 15 A1B59 C11 C13 C 0 1 N N N N N N 9.050 12.806 22.687 -0.689 -0.244 0.206 C11 A1B59 16 A1B59 O O2 O 0 1 N N N N N N 8.230 12.263 21.959 -0.349 -0.020 -0.937 O A1B59 17 A1B59 C9 C14 C 0 1 Y N N N N N 8.442 11.209 24.577 1.724 -0.211 0.689 C9 A1B59 18 A1B59 C1 C15 C 0 1 Y N N N N N 8.869 9.916 24.228 2.330 -1.265 0.014 C1 A1B59 19 A1B59 S S1 S 0 1 N N N N N N 10.354 9.718 23.288 1.498 -2.810 -0.139 S A1B59 20 A1B59 C C16 C 0 1 N N N N N N 10.383 7.977 22.901 2.682 -3.820 -1.071 C A1B59 21 A1B59 C3 C17 C 0 1 Y N N N N N 7.194 8.972 25.672 4.244 0.116 -0.413 C3 A1B59 22 A1B59 C2 C18 C 0 1 Y N N N N N 8.206 8.804 24.746 3.595 -1.097 -0.535 C2 A1B59 23 A1B59 H21 H1 H 0 1 N N N N N N 11.535 13.867 16.820 -4.011 1.388 -2.658 H21 A1B59 24 A1B59 H20 H2 H 0 1 N N N N N N 11.944 12.781 18.106 -5.647 1.236 -3.012 H20 A1B59 25 A1B59 H6 H3 H 0 1 N N N N N N 6.329 10.432 28.231 4.063 3.086 1.258 H6 A1B59 26 A1B59 H8 H4 H 0 1 N N N N N N 4.082 9.384 26.322 4.465 2.743 -1.833 H8 A1B59 27 A1B59 H7 H5 H 0 1 N N N N N N 3.990 9.513 28.112 4.690 4.304 -0.876 H7 A1B59 28 A1B59 H10 H6 H 0 1 N N N N N N 4.516 11.923 26.162 6.489 3.187 0.521 H10 A1B59 29 A1B59 H9 H7 H 0 1 N N N N N N 4.423 12.052 27.952 6.263 1.627 -0.435 H9 A1B59 30 A1B59 H11 H8 H 0 1 N N N N N N 7.035 12.322 25.727 1.911 1.815 1.337 H11 A1B59 31 A1B59 H13 H9 H 0 1 N N N N N N 8.616 13.328 24.713 0.188 0.371 2.052 H13 A1B59 32 A1B59 H12 H10 H 0 1 N N N N N N 10.168 12.454 24.473 0.275 -1.378 1.735 H12 A1B59 33 A1B59 H16 H11 H 0 1 N N N N N N 12.977 15.062 22.916 -2.964 1.403 2.339 H16 A1B59 34 A1B59 H17 H12 H 0 1 N N N N N N 12.687 13.384 22.346 -3.843 0.182 3.291 H17 A1B59 35 A1B59 H H13 H 0 1 N N N N N N 11.452 13.027 20.175 -3.551 1.804 -0.034 H A1B59 36 A1B59 H22 H14 H 0 1 N N N N N N 9.528 15.305 20.872 -3.527 -1.181 -0.678 H22 A1B59 37 A1B59 H23 H15 H 0 1 N N N N N N 9.035 13.670 20.314 -2.556 0.085 -1.469 H23 A1B59 38 A1B59 H18 H16 H 0 1 N N N N N N 11.825 15.967 20.940 -5.055 -0.529 1.237 H18 A1B59 39 A1B59 H19 H17 H 0 1 N N N N N N 13.143 14.858 20.429 -5.331 1.192 1.596 H19 A1B59 40 A1B59 H15 H18 H 0 1 N N N N N N 10.625 15.450 23.224 -1.560 -0.592 2.553 H15 A1B59 41 A1B59 H14 H19 H 0 1 N N N N N N 11.021 13.884 24.008 -2.879 -1.624 1.944 H14 A1B59 42 A1B59 H2 H20 H 0 1 N N N N N N 11.281 7.747 22.309 2.878 -3.352 -2.036 H2 A1B59 43 A1B59 H1 H21 H 0 1 N N N N N N 10.400 7.394 23.834 3.613 -3.899 -0.510 H1 A1B59 44 A1B59 H3 H22 H 0 1 N N N N N N 9.485 7.715 22.322 2.266 -4.815 -1.228 H3 A1B59 45 A1B59 H5 H23 H 0 1 N N N N N N 6.700 8.104 26.083 5.227 0.247 -0.840 H5 A1B59 46 A1B59 H4 H24 H 0 1 N N N N N N 8.483 7.811 24.423 4.069 -1.913 -1.061 H4 A1B59 47 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1B59 C S SING N N 1 A1B59 S C1 SING N N 2 A1B59 C1 C2 DOUB Y N 3 A1B59 C2 C3 SING Y N 4 A1B59 C3 C4 DOUB Y N 5 A1B59 C5 C4 SING N N 6 A1B59 C5 C6 SING N N 7 A1B59 C6 C7 SING N N 8 A1B59 C7 C5 SING N N 9 A1B59 C4 C8 SING Y N 10 A1B59 C8 C9 DOUB Y N 11 A1B59 C1 C9 SING Y N 12 A1B59 C9 C10 SING N N 13 A1B59 C10 C11 SING N N 14 A1B59 O C11 DOUB N N 15 A1B59 C11 N SING N N 16 A1B59 N C12 SING N N 17 A1B59 C12 C13 SING N N 18 A1B59 C13 C14 SING N N 19 A1B59 C14 C15 SING N N 20 A1B59 C15 C16 SING N N 21 A1B59 N1 C16 SING N N 22 A1B59 C16 O1 DOUB N N 23 A1B59 C17 C15 SING N N 24 A1B59 N C17 SING N N 25 A1B59 N1 H21 SING N N 26 A1B59 N1 H20 SING N N 27 A1B59 C5 H6 SING N N 28 A1B59 C6 H8 SING N N 29 A1B59 C6 H7 SING N N 30 A1B59 C7 H10 SING N N 31 A1B59 C7 H9 SING N N 32 A1B59 C8 H11 SING N N 33 A1B59 C10 H13 SING N N 34 A1B59 C10 H12 SING N N 35 A1B59 C13 H16 SING N N 36 A1B59 C13 H17 SING N N 37 A1B59 C15 H SING N N 38 A1B59 C17 H22 SING N N 39 A1B59 C17 H23 SING N N 40 A1B59 C14 H18 SING N N 41 A1B59 C14 H19 SING N N 42 A1B59 C12 H15 SING N N 43 A1B59 C12 H14 SING N N 44 A1B59 C H2 SING N N 45 A1B59 C H1 SING N N 46 A1B59 C H3 SING N N 47 A1B59 C3 H5 SING N N 48 A1B59 C2 H4 SING N N 49 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1B59 SMILES ACDLabs 14.52 "O=C(Cc1cc(ccc1SC)C1CC1)N1CCCC(C1)C(N)=O" A1B59 InChI InChI 1.06 "InChI=1S/C18H24N2O2S/c1-23-16-7-6-13(12-4-5-12)9-15(16)10-17(21)20-8-2-3-14(11-20)18(19)22/h6-7,9,12,14H,2-5,8,10-11H2,1H3,(H2,19,22)/t14-/m0/s1" A1B59 InChIKey InChI 1.06 WSXXVKQJHSXXCS-AWEZNQCLSA-N A1B59 SMILES_CANONICAL CACTVS 3.385 "CSc1ccc(cc1CC(=O)N2CCC[C@@H](C2)C(N)=O)C3CC3" A1B59 SMILES CACTVS 3.385 "CSc1ccc(cc1CC(=O)N2CCC[CH](C2)C(N)=O)C3CC3" A1B59 SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "CSc1ccc(cc1CC(=O)N2CCC[C@@H](C2)C(=O)N)C3CC3" A1B59 SMILES "OpenEye OEToolkits" 3.1.0.0 "CSc1ccc(cc1CC(=O)N2CCCC(C2)C(=O)N)C3CC3" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1B59 "SYSTEMATIC NAME" ACDLabs 14.52 "(3S)-1-{[5-cyclopropyl-2-(methylsulfanyl)phenyl]acetyl}piperidine-3-carboxamide" A1B59 "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "(3~{S})-1-[2-(5-cyclopropyl-2-methylsulfanyl-phenyl)ethanoyl]piperidine-3-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1B59 "Create component" 2025-03-24 RCSB A1B59 "Initial release" 2025-04-02 RCSB #