data_A1B5J # _chem_comp.id A1B5J _chem_comp.name "(3S)-1-[(2-chloropyridin-3-yl)acetyl]piperidine-3-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H16 Cl N3 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-03-24 _chem_comp.pdbx_modified_date 2025-03-28 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 281.738 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1B5J _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7I6Y _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1B5J N1 N1 N 0 1 N N N N N N 25.141 13.710 10.376 1.105 0.564 -0.125 N1 A1B5J 1 A1B5J C4 C1 C 0 1 N N N N N N 24.103 14.421 9.609 1.419 1.978 0.119 C4 A1B5J 2 A1B5J C5 C2 C 0 1 N N N N N N 25.855 12.652 9.932 -0.148 0.098 0.054 C5 A1B5J 3 A1B5J C6 C3 C 0 1 N N N N N N 25.451 12.071 8.588 -1.241 1.031 0.507 C6 A1B5J 4 A1B5J C7 C4 C 0 1 Y N N N N N 26.376 10.965 8.138 -2.534 0.268 0.629 C7 A1B5J 5 A1B5J C8 C5 C 0 1 Y N N N N N 27.361 11.207 7.187 -2.981 -0.164 1.868 C8 A1B5J 6 A1B5J C10 C6 C 0 1 Y N N N N N 27.900 8.886 7.200 -4.880 -1.104 0.768 C10 A1B5J 7 A1B5J CL CL1 CL 0 0 N N N N N N 24.960 9.235 9.666 -2.751 0.533 -2.052 CL A1B5J 8 A1B5J C11 C7 C 0 1 Y N N N N N 26.242 9.616 8.552 -3.295 -0.007 -0.494 C11 A1B5J 9 A1B5J N2 N2 N 0 1 Y N N N N N 26.966 8.604 8.127 -4.428 -0.675 -0.394 N2 A1B5J 10 A1B5J C9 C8 C 0 1 Y N N N N N 28.128 10.160 6.701 -4.177 -0.863 1.933 C9 A1B5J 11 A1B5J O1 O1 O 0 1 N N N N N N 26.769 12.170 10.582 -0.395 -1.071 -0.150 O1 A1B5J 12 A1B5J C3 C9 C 0 1 N N N N N N 22.770 14.368 10.339 2.596 2.060 1.096 C3 A1B5J 13 A1B5J C2 C10 C 0 1 N N N N N N 22.918 14.874 11.787 3.767 1.241 0.549 C2 A1B5J 14 A1B5J C12 C11 C 0 1 N N N N N N 25.333 14.224 11.735 2.180 -0.332 -0.572 C12 A1B5J 15 A1B5J C1 C12 C 0 1 N N S N N N 24.023 14.103 12.529 3.349 -0.225 0.418 C1 A1B5J 16 A1B5J C C13 C 0 1 N N N N N N 24.170 14.578 13.965 4.512 -1.037 -0.090 C A1B5J 17 A1B5J O O2 O 0 1 N N N N N N 24.636 15.695 14.224 5.572 -0.496 -0.326 O A1B5J 18 A1B5J N N3 N 0 1 N N N N N N 23.829 13.703 14.907 4.376 -2.364 -0.284 N A1B5J 19 A1B5J H8 H1 H 0 1 N N N N N N 23.994 13.947 8.622 1.691 2.459 -0.821 H8 A1B5J 20 A1B5J H7 H2 H 0 1 N N N N N N 24.404 15.471 9.481 0.550 2.477 0.547 H7 A1B5J 21 A1B5J H10 H3 H 0 1 N N N N N N 24.431 11.667 8.670 -0.977 1.456 1.476 H10 A1B5J 22 A1B5J H9 H4 H 0 1 N N N N N N 25.468 12.874 7.836 -1.360 1.833 -0.221 H9 A1B5J 23 A1B5J H11 H5 H 0 1 N N N N N N 27.528 12.211 6.827 -2.410 0.039 2.763 H11 A1B5J 24 A1B5J H13 H6 H 0 1 N N N N N N 28.506 8.075 6.824 -5.812 -1.648 0.811 H13 A1B5J 25 A1B5J H12 H7 H 0 1 N N N N N N 28.886 10.332 5.951 -4.554 -1.214 2.882 H12 A1B5J 26 A1B5J H6 H8 H 0 1 N N N N N N 22.409 13.329 10.355 2.901 3.100 1.211 H6 A1B5J 27 A1B5J H5 H9 H 0 1 N N N N N N 22.043 15.001 9.809 2.293 1.661 2.064 H5 A1B5J 28 A1B5J H4 H10 H 0 1 N N N N N N 21.964 14.734 12.316 4.053 1.626 -0.431 H4 A1B5J 29 A1B5J H3 H11 H 0 1 N N N N N N 23.175 15.944 11.770 4.614 1.318 1.230 H3 A1B5J 30 A1B5J H15 H12 H 0 1 N N N N N N 26.119 13.642 12.238 1.813 -1.359 -0.598 H15 A1B5J 31 A1B5J H14 H13 H 0 1 N N N N N N 25.634 15.281 11.686 2.510 -0.038 -1.568 H14 A1B5J 32 A1B5J H H14 H 0 1 N N N N N N 23.738 13.041 12.549 3.039 -0.603 1.393 H A1B5J 33 A1B5J H2 H15 H 0 1 N N N N N N 23.946 13.937 15.872 3.528 -2.796 -0.095 H2 A1B5J 34 A1B5J H1 H16 H 0 1 N N N N N N 23.456 12.811 14.650 5.125 -2.886 -0.611 H1 A1B5J 35 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1B5J N C SING N N 1 A1B5J O C DOUB N N 2 A1B5J C C1 SING N N 3 A1B5J C1 C2 SING N N 4 A1B5J C2 C3 SING N N 5 A1B5J C3 C4 SING N N 6 A1B5J C4 N1 SING N N 7 A1B5J N1 C5 SING N N 8 A1B5J O1 C5 DOUB N N 9 A1B5J C5 C6 SING N N 10 A1B5J C6 C7 SING N N 11 A1B5J C7 C8 DOUB Y N 12 A1B5J C8 C9 SING Y N 13 A1B5J C9 C10 DOUB Y N 14 A1B5J C10 N2 SING Y N 15 A1B5J N2 C11 DOUB Y N 16 A1B5J C7 C11 SING Y N 17 A1B5J C11 CL SING N N 18 A1B5J C12 N1 SING N N 19 A1B5J C1 C12 SING N N 20 A1B5J C4 H8 SING N N 21 A1B5J C4 H7 SING N N 22 A1B5J C6 H10 SING N N 23 A1B5J C6 H9 SING N N 24 A1B5J C8 H11 SING N N 25 A1B5J C10 H13 SING N N 26 A1B5J C9 H12 SING N N 27 A1B5J C3 H6 SING N N 28 A1B5J C3 H5 SING N N 29 A1B5J C2 H4 SING N N 30 A1B5J C2 H3 SING N N 31 A1B5J C12 H15 SING N N 32 A1B5J C12 H14 SING N N 33 A1B5J C1 H SING N N 34 A1B5J N H2 SING N N 35 A1B5J N H1 SING N N 36 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1B5J SMILES ACDLabs 14.52 "O=C(Cc1cccnc1Cl)N1CCCC(C1)C(N)=O" A1B5J InChI InChI 1.06 "InChI=1S/C13H16ClN3O2/c14-12-9(3-1-5-16-12)7-11(18)17-6-2-4-10(8-17)13(15)19/h1,3,5,10H,2,4,6-8H2,(H2,15,19)/t10-/m0/s1" A1B5J InChIKey InChI 1.06 MVRLSGDTKPBMCQ-JTQLQIEISA-N A1B5J SMILES_CANONICAL CACTVS 3.385 "NC(=O)[C@H]1CCCN(C1)C(=O)Cc2cccnc2Cl" A1B5J SMILES CACTVS 3.385 "NC(=O)[CH]1CCCN(C1)C(=O)Cc2cccnc2Cl" A1B5J SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "c1cc(c(nc1)Cl)CC(=O)N2CCC[C@@H](C2)C(=O)N" A1B5J SMILES "OpenEye OEToolkits" 3.1.0.0 "c1cc(c(nc1)Cl)CC(=O)N2CCCC(C2)C(=O)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1B5J "SYSTEMATIC NAME" ACDLabs 14.52 "(3S)-1-[(2-chloropyridin-3-yl)acetyl]piperidine-3-carboxamide" A1B5J "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "(3~{S})-1-[2-(2-chloranylpyridin-3-yl)ethanoyl]piperidine-3-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1B5J "Create component" 2025-03-24 RCSB A1B5J "Initial release" 2025-04-02 RCSB #