data_A1B5K # _chem_comp.id A1B5K _chem_comp.name "(3S)-1-[(4-chloropyrimidin-5-yl)acetyl]piperidine-3-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C12 H15 Cl N4 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-03-24 _chem_comp.pdbx_modified_date 2025-03-28 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 282.726 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1B5K _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7I6Z _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1B5K N1 N1 N 0 1 N N N N N N 25.170 13.706 10.461 1.118 0.559 -0.164 N1 A1B5K 1 A1B5K N3 N2 N 0 1 Y N N N N N 26.925 8.607 8.205 -4.418 -0.703 -0.320 N3 A1B5K 2 A1B5K C4 C1 C 0 1 N N N N N N 24.149 14.427 9.680 1.433 1.985 -0.006 C4 A1B5K 3 A1B5K C5 C2 C 0 1 N N N N N N 25.889 12.654 10.009 -0.134 0.106 0.040 C5 A1B5K 4 A1B5K C6 C3 C 0 1 N N N N N N 25.542 12.148 8.621 -1.228 1.065 0.434 C6 A1B5K 5 A1B5K C7 C4 C 0 1 Y N N N N N 26.397 10.981 8.198 -2.522 0.310 0.599 C7 A1B5K 6 A1B5K C8 C5 C 0 1 Y N N N N N 27.423 11.118 7.285 -2.978 -0.049 1.856 C8 A1B5K 7 A1B5K C10 C6 C 0 1 Y N N N N N 26.217 9.637 8.612 -3.286 -0.041 -0.505 C10 A1B5K 8 A1B5K CL CL1 CL 0 0 N N N N N N 24.917 9.301 9.717 -2.765 0.382 -2.106 CL A1B5K 9 A1B5K C9 C7 C 0 1 Y N N N N N 27.876 8.908 7.318 -4.820 -1.028 0.892 C9 A1B5K 10 A1B5K N2 N3 N 0 1 Y N N N N N 28.174 10.110 6.828 -4.120 -0.710 1.963 N2 A1B5K 11 A1B5K O1 O1 O 0 1 N N N N N N 26.801 12.164 10.661 -0.381 -1.074 -0.094 O1 A1B5K 12 A1B5K C3 C8 C 0 1 N N N N N N 22.800 14.374 10.378 2.608 2.126 0.967 C3 A1B5K 13 A1B5K C2 C9 C 0 1 N N N N N N 22.922 14.864 11.831 3.780 1.275 0.472 C2 A1B5K 14 A1B5K C11 C10 C 0 1 N N N N N N 25.339 14.191 11.832 2.194 -0.363 -0.554 C11 A1B5K 15 A1B5K C1 C11 C 0 1 N N S N N N 24.011 14.084 12.587 3.361 -0.197 0.430 C1 A1B5K 16 A1B5K C C12 C 0 1 N N N N N N 24.172 14.568 14.018 4.526 -1.038 -0.026 C A1B5K 17 A1B5K O O2 O 0 1 N N N N N N 24.634 15.688 14.268 5.586 -0.512 -0.292 O A1B5K 18 A1B5K N N4 N 0 1 N N N N N N 23.827 13.701 14.959 4.388 -2.374 -0.139 N A1B5K 19 A1B5K H8 H1 H 0 1 N N N N N N 24.060 13.963 8.687 1.707 2.408 -0.973 H8 A1B5K 20 A1B5K H7 H2 H 0 1 N N N N N N 24.456 15.477 9.567 0.564 2.510 0.389 H7 A1B5K 21 A1B5K H10 H3 H 0 1 N N N N N N 24.488 11.833 8.614 -0.966 1.548 1.375 H10 A1B5K 22 A1B5K H9 H4 H 0 1 N N N N N N 25.684 12.968 7.902 -1.345 1.821 -0.342 H9 A1B5K 23 A1B5K H11 H5 H 0 1 N N N N N N 27.634 12.110 6.913 -2.410 0.208 2.738 H11 A1B5K 24 A1B5K H12 H6 H 0 1 N N N N N N 28.472 8.083 6.957 -5.747 -1.568 1.012 H12 A1B5K 25 A1B5K H6 H7 H 0 1 N N N N N N 22.432 13.337 10.376 2.914 3.171 1.019 H6 A1B5K 26 A1B5K H5 H8 H 0 1 N N N N N N 22.088 15.016 9.839 2.303 1.787 1.957 H5 A1B5K 27 A1B5K H4 H9 H 0 1 N N N N N N 21.958 14.721 12.341 4.068 1.599 -0.528 H4 A1B5K 28 A1B5K H3 H10 H 0 1 N N N N N N 23.181 15.933 11.829 4.626 1.393 1.150 H3 A1B5K 29 A1B5K H14 H11 H 0 1 N N N N N N 26.100 13.583 12.343 1.827 -1.389 -0.518 H14 A1B5K 30 A1B5K H13 H12 H 0 1 N N N N N N 25.663 15.242 11.810 2.526 -0.129 -1.566 H13 A1B5K 31 A1B5K H H13 H 0 1 N N N N N N 23.716 13.025 12.612 3.050 -0.515 1.425 H A1B5K 32 A1B5K H2 H14 H 0 1 N N N N N N 23.936 13.941 15.924 3.540 -2.794 0.073 H2 A1B5K 33 A1B5K H1 H15 H 0 1 N N N N N N 23.458 12.807 14.704 5.138 -2.915 -0.433 H1 A1B5K 34 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1B5K N C SING N N 1 A1B5K O C DOUB N N 2 A1B5K C C1 SING N N 3 A1B5K C1 C2 SING N N 4 A1B5K C2 C3 SING N N 5 A1B5K C3 C4 SING N N 6 A1B5K C4 N1 SING N N 7 A1B5K N1 C5 SING N N 8 A1B5K O1 C5 DOUB N N 9 A1B5K C5 C6 SING N N 10 A1B5K C6 C7 SING N N 11 A1B5K C7 C8 DOUB Y N 12 A1B5K C8 N2 SING Y N 13 A1B5K N2 C9 DOUB Y N 14 A1B5K C9 N3 SING Y N 15 A1B5K N3 C10 DOUB Y N 16 A1B5K C7 C10 SING Y N 17 A1B5K C10 CL SING N N 18 A1B5K C11 N1 SING N N 19 A1B5K C1 C11 SING N N 20 A1B5K C4 H8 SING N N 21 A1B5K C4 H7 SING N N 22 A1B5K C6 H10 SING N N 23 A1B5K C6 H9 SING N N 24 A1B5K C8 H11 SING N N 25 A1B5K C9 H12 SING N N 26 A1B5K C3 H6 SING N N 27 A1B5K C3 H5 SING N N 28 A1B5K C2 H4 SING N N 29 A1B5K C2 H3 SING N N 30 A1B5K C11 H14 SING N N 31 A1B5K C11 H13 SING N N 32 A1B5K C1 H SING N N 33 A1B5K N H2 SING N N 34 A1B5K N H1 SING N N 35 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1B5K SMILES ACDLabs 14.52 "O=C(Cc1cncnc1Cl)N1CCCC(C1)C(N)=O" A1B5K InChI InChI 1.06 "InChI=1S/C12H15ClN4O2/c13-11-9(5-15-7-16-11)4-10(18)17-3-1-2-8(6-17)12(14)19/h5,7-8H,1-4,6H2,(H2,14,19)/t8-/m0/s1" A1B5K InChIKey InChI 1.06 XPAHSYNCKBEQTK-QMMMGPOBSA-N A1B5K SMILES_CANONICAL CACTVS 3.385 "NC(=O)[C@H]1CCCN(C1)C(=O)Cc2cncnc2Cl" A1B5K SMILES CACTVS 3.385 "NC(=O)[CH]1CCCN(C1)C(=O)Cc2cncnc2Cl" A1B5K SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "c1c(c(ncn1)Cl)CC(=O)N2CCC[C@@H](C2)C(=O)N" A1B5K SMILES "OpenEye OEToolkits" 3.1.0.0 "c1c(c(ncn1)Cl)CC(=O)N2CCCC(C2)C(=O)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1B5K "SYSTEMATIC NAME" ACDLabs 14.52 "(3S)-1-[(4-chloropyrimidin-5-yl)acetyl]piperidine-3-carboxamide" A1B5K "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "(3~{S})-1-[2-(4-chloranylpyrimidin-5-yl)ethanoyl]piperidine-3-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1B5K "Create component" 2025-03-24 RCSB A1B5K "Initial release" 2025-04-02 RCSB #