data_A1B5R # _chem_comp.id A1B5R _chem_comp.name "(3S)-1-[(2-chloropyrimidin-4-yl)acetyl]piperidine-3-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C12 H15 Cl N4 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-03-24 _chem_comp.pdbx_modified_date 2025-03-28 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 282.726 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1B5R _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7I7E _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1B5R N1 N1 N 0 1 N N N N N N 25.283 14.026 10.484 1.439 0.480 -0.570 N1 A1B5R 1 A1B5R N3 N2 N 0 1 Y N N N N N 25.288 10.144 9.214 -2.762 -0.047 -0.435 N3 A1B5R 2 A1B5R C4 C1 C 0 1 N N N N N N 24.211 14.710 9.744 1.916 1.753 -1.127 C4 A1B5R 3 A1B5R C5 C2 C 0 1 N N N N N N 25.970 12.957 10.034 0.146 0.326 -0.219 C5 A1B5R 4 A1B5R C6 C3 C 0 1 N N N N N N 25.621 12.461 8.643 -0.824 1.465 -0.397 C6 A1B5R 5 A1B5R C7 C4 C 0 1 Y N N N N N 25.990 11.010 8.466 -2.192 1.036 0.068 C7 A1B5R 6 A1B5R C8 C5 C 0 1 Y N N N N N 27.016 10.606 7.631 -2.870 1.772 1.026 C8 A1B5R 7 A1B5R C10 C6 C 0 1 Y N N N N N 25.681 8.892 9.110 -3.959 -0.429 -0.034 C10 A1B5R 8 A1B5R CL CL1 CL 0 0 N N N N N N 24.748 7.764 10.035 -4.666 -1.857 -0.721 CL A1B5R 9 A1B5R N2 N3 N 0 1 Y N N N N N 26.655 8.363 8.394 -4.634 0.247 0.877 N2 A1B5R 10 A1B5R C9 C7 C 0 1 Y N N N N N 27.313 9.261 7.643 -4.126 1.340 1.423 C9 A1B5R 11 A1B5R O1 O1 O 0 1 N N N N N N 26.808 12.387 10.718 -0.235 -0.730 0.239 O1 A1B5R 12 A1B5R C3 C8 C 0 1 N N N N N N 22.878 14.539 10.460 3.117 2.231 -0.305 C3 A1B5R 13 A1B5R C2 C9 C 0 1 N N N N N N 22.993 14.954 11.936 4.175 1.127 -0.265 C2 A1B5R 14 A1B5R C11 C10 C 0 1 N N N N N N 25.448 14.452 11.876 2.395 -0.623 -0.409 C11 A1B5R 15 A1B5R C1 C11 C 0 1 N N S N N N 24.142 14.199 12.640 3.592 -0.117 0.410 C1 A1B5R 16 A1B5R C C12 C 0 1 N N N N N N 24.286 14.619 14.094 4.645 -1.193 0.478 C A1B5R 17 A1B5R O O2 O 0 1 N N N N N N 24.753 15.721 14.397 5.753 -0.986 0.031 O A1B5R 18 A1B5R N N4 N 0 1 N N N N N N 23.902 13.727 15.001 4.355 -2.385 1.036 N A1B5R 19 A1B5R H8 H1 H 0 1 N N N N N N 24.137 14.281 8.734 2.218 1.608 -2.164 H8 A1B5R 20 A1B5R H7 H2 H 0 1 N N N N N N 24.448 15.782 9.671 1.119 2.495 -1.079 H7 A1B5R 21 A1B5R H10 H3 H 0 1 N N N N N N 24.539 12.577 8.483 -0.492 2.320 0.192 H10 A1B5R 22 A1B5R H9 H4 H 0 1 N N N N N N 26.168 13.062 7.901 -0.868 1.744 -1.449 H9 A1B5R 23 A1B5R H11 H5 H 0 1 N N N N N N 27.553 11.304 7.006 -2.430 2.661 1.455 H11 A1B5R 24 A1B5R H12 H6 H 0 1 N N N N N N 28.118 8.910 7.015 -4.684 1.889 2.168 H12 A1B5R 25 A1B5R H6 H7 H 0 1 N N N N N N 22.572 13.484 10.405 3.540 3.124 -0.765 H6 A1B5R 26 A1B5R H5 H8 H 0 1 N N N N N N 22.121 15.167 9.967 2.794 2.463 0.710 H5 A1B5R 27 A1B5R H4 H9 H 0 1 N N N N N N 22.047 14.725 12.448 4.480 0.879 -1.282 H4 A1B5R 28 A1B5R H3 H10 H 0 1 N N N N N N 23.188 16.035 11.991 5.041 1.473 0.299 H3 A1B5R 29 A1B5R H14 H11 H 0 1 N N N N N N 26.263 13.879 12.342 1.915 -1.450 0.116 H14 A1B5R 30 A1B5R H13 H12 H 0 1 N N N N N N 25.690 15.525 11.906 2.733 -0.960 -1.389 H13 A1B5R 31 A1B5R H H13 H 0 1 N N N N N N 23.921 13.122 12.605 3.264 0.137 1.419 H A1B5R 32 A1B5R H2 H14 H 0 1 N N N N N N 23.986 13.937 15.975 3.468 -2.550 1.394 H2 A1B5R 33 A1B5R H1 H15 H 0 1 N N N N N N 23.529 12.846 14.709 5.032 -3.078 1.080 H1 A1B5R 34 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1B5R N C SING N N 1 A1B5R O C DOUB N N 2 A1B5R C C1 SING N N 3 A1B5R C1 C2 SING N N 4 A1B5R C2 C3 SING N N 5 A1B5R C3 C4 SING N N 6 A1B5R C4 N1 SING N N 7 A1B5R N1 C5 SING N N 8 A1B5R O1 C5 DOUB N N 9 A1B5R C5 C6 SING N N 10 A1B5R C6 C7 SING N N 11 A1B5R C7 C8 DOUB Y N 12 A1B5R C8 C9 SING Y N 13 A1B5R C9 N2 DOUB Y N 14 A1B5R N2 C10 SING Y N 15 A1B5R C10 CL SING N N 16 A1B5R N3 C10 DOUB Y N 17 A1B5R C7 N3 SING Y N 18 A1B5R C11 N1 SING N N 19 A1B5R C1 C11 SING N N 20 A1B5R C4 H8 SING N N 21 A1B5R C4 H7 SING N N 22 A1B5R C6 H10 SING N N 23 A1B5R C6 H9 SING N N 24 A1B5R C8 H11 SING N N 25 A1B5R C9 H12 SING N N 26 A1B5R C3 H6 SING N N 27 A1B5R C3 H5 SING N N 28 A1B5R C2 H4 SING N N 29 A1B5R C2 H3 SING N N 30 A1B5R C11 H14 SING N N 31 A1B5R C11 H13 SING N N 32 A1B5R C1 H SING N N 33 A1B5R N H2 SING N N 34 A1B5R N H1 SING N N 35 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1B5R SMILES ACDLabs 14.52 "O=C(Cc1ccnc(Cl)n1)N1CCCC(C1)C(N)=O" A1B5R InChI InChI 1.06 "InChI=1S/C12H15ClN4O2/c13-12-15-4-3-9(16-12)6-10(18)17-5-1-2-8(7-17)11(14)19/h3-4,8H,1-2,5-7H2,(H2,14,19)/t8-/m0/s1" A1B5R InChIKey InChI 1.06 UJTNPOXHMLXHKO-QMMMGPOBSA-N A1B5R SMILES_CANONICAL CACTVS 3.385 "NC(=O)[C@H]1CCCN(C1)C(=O)Cc2ccnc(Cl)n2" A1B5R SMILES CACTVS 3.385 "NC(=O)[CH]1CCCN(C1)C(=O)Cc2ccnc(Cl)n2" A1B5R SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "c1cnc(nc1CC(=O)N2CCC[C@@H](C2)C(=O)N)Cl" A1B5R SMILES "OpenEye OEToolkits" 3.1.0.0 "c1cnc(nc1CC(=O)N2CCCC(C2)C(=O)N)Cl" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1B5R "SYSTEMATIC NAME" ACDLabs 14.52 "(3S)-1-[(2-chloropyrimidin-4-yl)acetyl]piperidine-3-carboxamide" A1B5R "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "(3~{S})-1-[2-(2-chloranylpyrimidin-4-yl)ethanoyl]piperidine-3-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1B5R "Create component" 2025-03-24 RCSB A1B5R "Initial release" 2025-04-02 RCSB #