data_A1B5T # _chem_comp.id A1B5T _chem_comp.name "(3S)-1-[(4-cyanopyrimidin-5-yl)acetyl]piperidine-3-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H15 N5 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-03-24 _chem_comp.pdbx_modified_date 2025-03-28 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 273.291 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1B5T _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7I7D _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1B5T N1 N1 N 0 1 Y N N N N N 8.217 8.959 25.489 -4.353 0.659 -0.892 N1 A1B5T 1 A1B5T N3 N2 N 0 1 N N N N N N 10.355 13.552 22.479 1.016 -0.474 0.732 N3 A1B5T 2 A1B5T C4 C1 C 0 1 Y N N N N N 8.918 11.204 25.034 -2.698 -0.349 0.439 C4 A1B5T 3 A1B5T C5 C2 C 0 1 N N N N N N 9.920 12.173 24.453 -1.380 -1.066 0.576 C5 A1B5T 4 A1B5T C6 C3 C 0 1 N N N N N N 9.599 12.568 23.021 -0.261 -0.058 0.613 C6 A1B5T 5 A1B5T C7 C4 C 0 1 N N N N N N 11.404 14.292 23.201 1.332 -1.905 0.826 C7 A1B5T 6 A1B5T C8 C5 C 0 1 N N N N N N 12.715 14.278 22.434 2.360 -2.256 -0.253 C8 A1B5T 7 A1B5T C10 C6 C 0 1 N N S N N N 11.415 13.953 20.288 3.138 0.119 -0.316 C10 A1B5T 8 A1B5T O1 O1 O 0 1 N N N N N N 10.781 15.581 18.630 5.437 0.552 0.002 O1 A1B5T 9 A1B5T C11 C7 C 0 1 N N N N N N 11.199 14.435 18.864 4.339 1.024 -0.211 C11 A1B5T 10 A1B5T N4 N3 N 0 1 N N N N N N 11.471 13.555 17.911 4.195 2.356 -0.354 N4 A1B5T 11 A1B5T C9 C8 C 0 1 N N N N N N 12.507 14.767 20.996 3.574 -1.334 -0.115 C9 A1B5T 12 A1B5T C12 C9 C 0 1 N N N N N N 10.118 14.006 21.104 2.119 0.497 0.764 C12 A1B5T 13 A1B5T O O2 O 0 1 N N N N N N 8.678 12.046 22.408 -0.509 1.126 0.536 O A1B5T 14 A1B5T C1 C10 C 0 1 Y N N N N N 9.038 9.824 24.866 -3.183 0.027 -0.817 C1 A1B5T 15 A1B5T C C11 C 0 1 N N N N N N 10.032 9.244 23.989 -2.436 -0.264 -2.003 C A1B5T 16 A1B5T N N4 N 0 1 N N N N N N 10.829 8.827 23.283 -1.842 -0.495 -2.944 N A1B5T 17 A1B5T C3 C12 C 0 1 Y N N N N N 7.881 11.624 25.844 -3.461 -0.043 1.555 C3 A1B5T 18 A1B5T N2 N5 N 0 1 Y N N N N N 7.044 10.794 26.470 -4.613 0.587 1.395 N2 A1B5T 19 A1B5T C2 C13 C 0 1 Y N N N N N 7.275 9.503 26.263 -5.043 0.928 0.196 C2 A1B5T 20 A1B5T H3 H1 H 0 1 N N N N N N 9.931 13.081 25.074 -1.377 -1.647 1.498 H3 A1B5T 21 A1B5T H4 H2 H 0 1 N N N N N N 10.915 11.704 24.473 -1.240 -1.734 -0.274 H4 A1B5T 22 A1B5T H6 H3 H 0 1 N N N N N N 11.079 15.334 23.337 1.746 -2.124 1.811 H6 A1B5T 23 A1B5T H5 H4 H 0 1 N N N N N N 11.559 13.825 24.185 0.425 -2.491 0.671 H5 A1B5T 24 A1B5T H7 H5 H 0 1 N N N N N N 13.436 14.938 22.939 2.675 -3.292 -0.133 H7 A1B5T 25 A1B5T H8 H6 H 0 1 N N N N N N 13.110 13.252 22.413 1.913 -2.123 -1.238 H8 A1B5T 26 A1B5T H H7 H 0 1 N N N N N N 11.747 12.905 20.248 2.684 0.230 -1.300 H A1B5T 27 A1B5T H12 H8 H 0 1 N N N N N N 11.342 13.802 16.951 3.317 2.733 -0.525 H12 A1B5T 28 A1B5T H11 H9 H 0 1 N N N N N N 11.806 12.644 18.152 4.968 2.938 -0.287 H11 A1B5T 29 A1B5T H9 H10 H 0 1 N N N N N N 12.210 15.826 21.016 4.006 -1.449 0.880 H9 A1B5T 30 A1B5T H10 H11 H 0 1 N N N N N N 13.451 14.662 20.441 4.318 -1.597 -0.866 H10 A1B5T 31 A1B5T H13 H12 H 0 1 N N N N N N 9.745 15.041 21.124 1.732 1.496 0.567 H13 A1B5T 32 A1B5T H14 H13 H 0 1 N N N N N N 9.367 13.355 20.632 2.597 0.474 1.742 H14 A1B5T 33 A1B5T H2 H14 H 0 1 N N N N N N 7.739 12.686 25.979 -3.119 -0.317 2.542 H2 A1B5T 34 A1B5T H1 H15 H 0 1 N N N N N N 6.625 8.813 26.781 -5.988 1.442 0.104 H1 A1B5T 35 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1B5T N C TRIP N N 1 A1B5T C C1 SING N N 2 A1B5T C1 N1 DOUB Y N 3 A1B5T N1 C2 SING Y N 4 A1B5T C2 N2 DOUB Y N 5 A1B5T N2 C3 SING Y N 6 A1B5T C3 C4 DOUB Y N 7 A1B5T C1 C4 SING Y N 8 A1B5T C4 C5 SING N N 9 A1B5T C5 C6 SING N N 10 A1B5T O C6 DOUB N N 11 A1B5T C6 N3 SING N N 12 A1B5T N3 C7 SING N N 13 A1B5T C7 C8 SING N N 14 A1B5T C8 C9 SING N N 15 A1B5T C9 C10 SING N N 16 A1B5T C10 C11 SING N N 17 A1B5T N4 C11 SING N N 18 A1B5T C11 O1 DOUB N N 19 A1B5T C12 C10 SING N N 20 A1B5T N3 C12 SING N N 21 A1B5T C5 H3 SING N N 22 A1B5T C5 H4 SING N N 23 A1B5T C7 H6 SING N N 24 A1B5T C7 H5 SING N N 25 A1B5T C8 H7 SING N N 26 A1B5T C8 H8 SING N N 27 A1B5T C10 H SING N N 28 A1B5T N4 H12 SING N N 29 A1B5T N4 H11 SING N N 30 A1B5T C9 H9 SING N N 31 A1B5T C9 H10 SING N N 32 A1B5T C12 H13 SING N N 33 A1B5T C12 H14 SING N N 34 A1B5T C3 H2 SING N N 35 A1B5T C2 H1 SING N N 36 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1B5T SMILES ACDLabs 14.52 "O=C(Cc1cncnc1C#N)N1CCCC(C1)C(N)=O" A1B5T InChI InChI 1.06 "InChI=1S/C13H15N5O2/c14-5-11-10(6-16-8-17-11)4-12(19)18-3-1-2-9(7-18)13(15)20/h6,8-9H,1-4,7H2,(H2,15,20)/t9-/m0/s1" A1B5T InChIKey InChI 1.06 WXXXEMOOVWCNSU-VIFPVBQESA-N A1B5T SMILES_CANONICAL CACTVS 3.385 "NC(=O)[C@H]1CCCN(C1)C(=O)Cc2cncnc2C#N" A1B5T SMILES CACTVS 3.385 "NC(=O)[CH]1CCCN(C1)C(=O)Cc2cncnc2C#N" A1B5T SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "c1c(c(ncn1)C#N)CC(=O)N2CCC[C@@H](C2)C(=O)N" A1B5T SMILES "OpenEye OEToolkits" 3.1.0.0 "c1c(c(ncn1)C#N)CC(=O)N2CCCC(C2)C(=O)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1B5T "SYSTEMATIC NAME" ACDLabs 14.52 "(3S)-1-[(4-cyanopyrimidin-5-yl)acetyl]piperidine-3-carboxamide" A1B5T "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "(3~{S})-1-[2-(4-cyanopyrimidin-5-yl)ethanoyl]piperidine-3-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1B5T "Create component" 2025-03-24 RCSB A1B5T "Initial release" 2025-04-02 RCSB #