data_A1B5Z # _chem_comp.id A1B5Z _chem_comp.name "(3S)-1-{[4-(methylsulfanyl)thiophen-3-yl]acetyl}piperidine-3-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H18 N2 O2 S2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-03-24 _chem_comp.pdbx_modified_date 2025-03-28 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 298.424 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1B5Z _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7I8Y _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1B5Z N1 N1 N 0 1 N N N N N N 11.557 13.510 18.054 -4.471 0.719 -2.312 N1 A1B5Z 1 A1B5Z C4 C1 C 0 1 Y N N N N N 8.731 11.014 24.898 2.324 -0.800 0.337 C4 A1B5Z 2 A1B5Z C5 C2 C 0 1 N N N N N N 9.354 12.316 24.462 0.990 -0.940 1.023 C5 A1B5Z 3 A1B5Z C6 C3 C 0 1 N N N N N N 9.235 12.645 22.985 -0.115 -0.787 0.009 C6 A1B5Z 4 A1B5Z C7 C4 C 0 1 N N N N N N 11.038 14.360 23.311 -1.745 -1.119 1.805 C7 A1B5Z 5 A1B5Z C8 C5 C 0 1 N N N N N N 12.407 14.322 22.655 -2.717 -0.031 2.271 C8 A1B5Z 6 A1B5Z C10 C6 C 0 1 N N S N N N 11.273 13.965 20.405 -3.453 0.356 -0.086 C10 A1B5Z 7 A1B5Z O1 O1 O 0 1 N N N N N N 10.766 15.520 18.644 -5.759 0.225 -0.574 O1 A1B5Z 8 A1B5Z C11 C7 C 0 1 N N N N N N 11.183 14.401 18.951 -4.644 0.428 -1.007 C11 A1B5Z 9 A1B5Z C9 C8 C 0 1 N N N N N N 12.313 14.783 21.188 -3.922 0.011 1.329 C9 A1B5Z 10 A1B5Z C12 C9 C 0 1 N N N N N N 9.926 14.086 21.123 -2.490 -0.729 -0.580 C12 A1B5Z 11 A1B5Z N N2 N 0 1 N N N N N N 10.047 13.619 22.508 -1.403 -0.875 0.397 N A1B5Z 12 A1B5Z O O2 O 0 1 N N N N N N 8.419 12.078 22.277 0.155 -0.586 -1.156 O A1B5Z 13 A1B5Z C3 C10 C 0 1 Y N N N N N 7.767 10.926 25.856 3.024 -1.852 -0.091 C3 A1B5Z 14 A1B5Z S1 S1 S 0 1 Y N N N N N 7.262 9.327 26.118 4.520 -1.305 -0.836 S1 A1B5Z 15 A1B5Z C2 C11 C 0 1 Y N N N N N 8.360 8.707 24.959 4.103 0.374 -0.517 C2 A1B5Z 16 A1B5Z C1 C12 C 0 1 Y N N N N N 9.075 9.700 24.383 2.916 0.432 0.097 C1 A1B5Z 17 A1B5Z S S2 S 0 1 N N N N N N 10.284 9.504 23.134 2.168 1.954 0.576 S A1B5Z 18 A1B5Z C C13 C 0 1 N N N N N N 10.352 7.732 22.894 3.377 3.192 0.032 C A1B5Z 19 A1B5Z H15 H1 H 0 1 N N N N N N 11.508 13.730 17.080 -3.579 0.881 -2.658 H15 A1B5Z 20 A1B5Z H14 H2 H 0 1 N N N N N N 11.889 12.614 18.348 -5.237 0.761 -2.905 H14 A1B5Z 21 A1B5Z H7 H3 H 0 1 N N N N N N 8.872 13.127 25.028 0.922 -1.922 1.490 H7 A1B5Z 22 A1B5Z H6 H4 H 0 1 N N N N N N 10.424 12.279 24.714 0.891 -0.168 1.786 H6 A1B5Z 23 A1B5Z H9 H5 H 0 1 N N N N N N 10.714 15.407 23.406 -0.841 -1.087 2.412 H9 A1B5Z 24 A1B5Z H8 H6 H 0 1 N N N N N N 11.105 13.904 24.310 -2.217 -2.097 1.904 H8 A1B5Z 25 A1B5Z H10 H7 H 0 1 N N N N N N 13.089 14.990 23.202 -3.054 -0.253 3.284 H10 A1B5Z 26 A1B5Z H11 H8 H 0 1 N N N N N N 12.796 13.294 22.687 -2.213 0.936 2.260 H11 A1B5Z 27 A1B5Z H H9 H 0 1 N N N N N N 11.581 12.909 20.430 -2.943 1.319 -0.076 H A1B5Z 28 A1B5Z H12 H10 H 0 1 N N N N N N 12.024 15.844 21.165 -4.411 -0.963 1.322 H12 A1B5Z 29 A1B5Z H13 H11 H 0 1 N N N N N N 13.297 14.660 20.711 -4.626 0.768 1.673 H13 A1B5Z 30 A1B5Z H16 H12 H 0 1 N N N N N N 9.606 15.139 21.121 -3.024 -1.674 -0.678 H16 A1B5Z 31 A1B5Z H17 H13 H 0 1 N N N N N N 9.178 13.475 20.597 -2.079 -0.439 -1.547 H17 A1B5Z 32 A1B5Z H5 H14 H 0 1 N N N N N N 7.369 11.777 26.389 2.719 -2.883 0.005 H5 A1B5Z 33 A1B5Z H4 H15 H 0 1 N N N N N N 8.467 7.659 24.719 4.710 1.227 -0.781 H4 A1B5Z 34 A1B5Z H2 H16 H 0 1 N N N N N N 11.093 7.495 22.117 4.328 3.016 0.534 H2 A1B5Z 35 A1B5Z H1 H17 H 0 1 N N N N N N 10.641 7.245 23.837 3.516 3.114 -1.047 H1 A1B5Z 36 A1B5Z H3 H18 H 0 1 N N N N N N 9.363 7.366 22.581 3.013 4.189 0.280 H3 A1B5Z 37 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1B5Z C S SING N N 1 A1B5Z S C1 SING N N 2 A1B5Z C1 C2 DOUB Y N 3 A1B5Z C2 S1 SING Y N 4 A1B5Z S1 C3 SING Y N 5 A1B5Z C3 C4 DOUB Y N 6 A1B5Z C1 C4 SING Y N 7 A1B5Z C4 C5 SING N N 8 A1B5Z C5 C6 SING N N 9 A1B5Z O C6 DOUB N N 10 A1B5Z C6 N SING N N 11 A1B5Z N C7 SING N N 12 A1B5Z C7 C8 SING N N 13 A1B5Z C8 C9 SING N N 14 A1B5Z C9 C10 SING N N 15 A1B5Z C10 C11 SING N N 16 A1B5Z N1 C11 SING N N 17 A1B5Z C11 O1 DOUB N N 18 A1B5Z C12 C10 SING N N 19 A1B5Z N C12 SING N N 20 A1B5Z N1 H15 SING N N 21 A1B5Z N1 H14 SING N N 22 A1B5Z C5 H7 SING N N 23 A1B5Z C5 H6 SING N N 24 A1B5Z C7 H9 SING N N 25 A1B5Z C7 H8 SING N N 26 A1B5Z C8 H10 SING N N 27 A1B5Z C8 H11 SING N N 28 A1B5Z C10 H SING N N 29 A1B5Z C9 H12 SING N N 30 A1B5Z C9 H13 SING N N 31 A1B5Z C12 H16 SING N N 32 A1B5Z C12 H17 SING N N 33 A1B5Z C3 H5 SING N N 34 A1B5Z C2 H4 SING N N 35 A1B5Z C H2 SING N N 36 A1B5Z C H1 SING N N 37 A1B5Z C H3 SING N N 38 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1B5Z SMILES ACDLabs 14.52 "CSc1cscc1CC(=O)N1CCCC(C1)C(N)=O" A1B5Z InChI InChI 1.06 "InChI=1S/C13H18N2O2S2/c1-18-11-8-19-7-10(11)5-12(16)15-4-2-3-9(6-15)13(14)17/h7-9H,2-6H2,1H3,(H2,14,17)/t9-/m0/s1" A1B5Z InChIKey InChI 1.06 ZVMJXFQDYDQURV-VIFPVBQESA-N A1B5Z SMILES_CANONICAL CACTVS 3.385 "CSc1cscc1CC(=O)N2CCC[C@@H](C2)C(N)=O" A1B5Z SMILES CACTVS 3.385 "CSc1cscc1CC(=O)N2CCC[CH](C2)C(N)=O" A1B5Z SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "CSc1cscc1CC(=O)N2CCC[C@@H](C2)C(=O)N" A1B5Z SMILES "OpenEye OEToolkits" 3.1.0.0 "CSc1cscc1CC(=O)N2CCCC(C2)C(=O)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1B5Z "SYSTEMATIC NAME" ACDLabs 14.52 "(3S)-1-{[4-(methylsulfanyl)thiophen-3-yl]acetyl}piperidine-3-carboxamide" A1B5Z "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "(3~{S})-1-[2-(4-methylsulfanylthiophen-3-yl)ethanoyl]piperidine-3-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1B5Z "Create component" 2025-03-24 RCSB A1B5Z "Initial release" 2025-04-02 RCSB #