data_A1B66 # _chem_comp.id A1B66 _chem_comp.name "(2S)-N-methyl-N-{6-methyl-2-[(4aS,5aR)-5a-methyl-1,4,4a,5,5a,6-hexahydrocyclopropa[f]indazol-3-yl]-1H-1,3-benzimidazol-5-yl}-2-(morpholin-4-yl)propanamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H32 N6 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-03-26 _chem_comp.pdbx_modified_date 2025-11-14 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 448.561 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1B66 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9NWX _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1B66 C36 C1 C 0 1 N N N N N N 5.087 6.288 21.499 -4.150 -0.819 -1.213 C36 A1B66 1 A1B66 C33 C2 C 0 1 N N N N N N 3.146 8.080 21.220 -6.033 -2.468 -1.975 C33 A1B66 2 A1B66 C37 C3 C 0 1 N N N N N N 2.338 7.346 18.861 -6.705 -3.338 0.398 C37 A1B66 3 A1B66 C34 C4 C 0 1 N N S N N N 4.252 7.239 20.614 -4.858 -2.171 -1.041 C34 A1B66 4 A1B66 C32 C5 C 0 1 N N R N N N 2.813 6.971 20.264 -6.289 -2.169 -0.497 C32 A1B66 5 A1B66 C4 C6 C 0 1 Y N N N N N 7.881 4.305 24.612 -0.409 2.254 0.697 C4 A1B66 6 A1B66 C7 C7 C 0 1 Y N N N N N 9.392 2.647 26.192 1.946 1.793 -0.697 C7 A1B66 7 A1B66 C6 C8 C 0 1 Y N N N N N 8.032 2.376 26.047 0.810 1.083 -1.038 C6 A1B66 8 A1B66 C9 C9 C 0 1 N N N N N N 10.830 0.634 26.155 3.507 2.433 -2.518 C9 A1B66 9 A1B66 C20 C10 C 0 1 N N N N N N 8.044 1.203 29.646 3.853 -2.624 0.932 C20 A1B66 10 A1B66 C16 C11 C 0 1 N N N N N N 8.227 3.244 31.008 5.775 -1.272 0.358 C16 A1B66 11 A1B66 C19 C12 C 0 1 N N N N N N 7.325 0.572 30.804 4.717 -3.882 0.810 C19 A1B66 12 A1B66 C26 C13 C 0 1 Y N N N N N 4.201 5.338 22.267 -4.582 0.077 -0.079 C26 A1B66 13 A1B66 C1 C14 C 0 1 N N N N N N 11.457 4.096 25.797 3.155 3.497 0.693 C1 A1B66 14 A1B66 C2 C15 C 0 1 Y N N N N N 9.995 3.776 25.619 1.909 2.730 0.333 C2 A1B66 15 A1B66 C3 C16 C 0 1 Y N N N N N 9.213 4.603 24.818 0.740 2.959 1.026 C3 A1B66 16 A1B66 C5 C17 C 0 1 Y N N N N N 7.278 3.207 25.221 -0.381 1.307 -0.342 C5 A1B66 17 A1B66 N8 N1 N 0 1 N N N N N N 10.199 1.707 26.925 3.142 1.570 -1.393 N8 A1B66 18 A1B66 C10 C18 C 0 1 N N N N N N 10.524 1.833 28.239 3.956 0.560 -1.026 C10 A1B66 19 A1B66 O11 O1 O 0 1 N N N N N N 11.319 1.085 28.780 5.022 0.407 -1.584 O11 A1B66 20 A1B66 C12 C19 C 0 1 N N S N N N 9.803 2.900 29.074 3.541 -0.380 0.076 C12 A1B66 21 A1B66 C14 C20 C 0 1 N N N N N N 10.816 3.916 29.584 3.716 0.312 1.430 C14 A1B66 22 A1B66 N15 N2 N 0 1 N N N N N N 8.945 2.280 30.124 4.377 -1.587 0.032 N15 A1B66 23 A1B66 C17 C21 C 0 1 N N N N N N 7.448 2.507 32.068 6.620 -2.543 0.241 C17 A1B66 24 A1B66 O18 O2 O 0 1 N N N N N N 6.564 1.536 31.510 6.078 -3.550 1.100 O18 A1B66 25 A1B66 N21 N3 N 0 1 Y N N N N N 5.940 3.122 24.812 -1.627 0.782 -0.438 N21 A1B66 26 A1B66 C22 C22 C 0 1 Y N N N N N 5.766 4.163 24.008 -2.409 1.333 0.458 C22 A1B66 27 A1B66 N23 N4 N 0 1 Y N N N N N 6.899 4.902 23.840 -1.702 2.247 1.190 N23 A1B66 28 A1B66 C25 C23 C 0 1 Y N N N N N 4.503 4.429 23.336 -3.839 1.011 0.652 C25 A1B66 29 A1B66 C27 C24 C 0 1 Y N N N N N 2.881 5.101 21.957 -5.853 0.079 0.405 C27 A1B66 30 A1B66 N28 N5 N 0 1 Y N N N N N 2.443 4.149 22.797 -5.917 0.975 1.400 N28 A1B66 31 A1B66 N30 N6 N 0 1 Y N N N N N 3.415 3.724 23.666 -4.647 1.554 1.547 N30 A1B66 32 A1B66 C31 C25 C 0 1 N N N N N N 2.092 5.757 20.867 -6.931 -0.816 -0.159 C31 A1B66 33 A1B66 H62 H1 H 0 1 N N N N N N 5.767 5.706 20.859 -3.070 -0.961 -1.180 H62 A1B66 34 A1B66 H61 H2 H 0 1 N N N N N N 5.675 6.885 22.211 -4.435 -0.371 -2.165 H61 A1B66 35 A1B66 H59 H3 H 0 1 N N N N N N 3.020 9.129 20.912 -6.307 -1.701 -2.699 H59 A1B66 36 A1B66 H60 H4 H 0 1 N N N N N N 2.900 7.979 22.287 -6.161 -3.497 -2.310 H60 A1B66 37 A1B66 H63 H5 H 0 1 N N N N N N 1.273 7.093 18.754 -6.062 -3.369 1.278 H63 A1B66 38 A1B66 H65 H6 H 0 1 N N N N N N 2.476 8.426 18.704 -7.741 -3.206 0.710 H65 A1B66 39 A1B66 H64 H7 H 0 1 N N N N N N 2.924 6.789 18.115 -6.609 -4.272 -0.156 H64 A1B66 40 A1B66 H35 H8 H 0 1 N N N N N N 4.831 7.744 19.827 -4.216 -3.005 -0.760 H35 A1B66 41 A1B66 H42 H9 H 0 1 N N N N N N 7.575 1.544 26.562 0.844 0.357 -1.837 H42 A1B66 42 A1B66 H45 H10 H 0 1 N N N N N N 11.413 -0.009 26.831 4.166 3.228 -2.168 H45 A1B66 43 A1B66 H44 H11 H 0 1 N N N N N N 10.053 0.034 25.658 4.022 1.843 -3.277 H44 A1B66 44 A1B66 H43 H12 H 0 1 N N N N N N 11.497 1.070 25.397 2.606 2.871 -2.948 H43 A1B66 45 A1B66 H55 H13 H 0 1 N N N N N N 7.307 1.629 28.950 2.825 -2.861 0.657 H55 A1B66 46 A1B66 H56 H14 H 0 1 N N N N N N 8.638 0.437 29.127 3.881 -2.262 1.960 H56 A1B66 47 A1B66 H49 H15 H 0 1 N N N N N N 8.960 3.907 31.492 6.150 -0.520 -0.337 H49 A1B66 48 A1B66 H50 H16 H 0 1 N N N N N N 7.534 3.845 30.401 5.834 -0.887 1.376 H50 A1B66 49 A1B66 H54 H17 H 0 1 N N N N N N 6.652 -0.212 30.427 4.367 -4.634 1.517 H54 A1B66 50 A1B66 H53 H18 H 0 1 N N N N N N 8.063 0.125 31.486 4.647 -4.275 -0.205 H53 A1B66 51 A1B66 H39 H19 H 0 1 N N N N N N 11.587 4.743 26.677 3.200 4.414 0.105 H39 A1B66 52 A1B66 H38 H20 H 0 1 N N N N N N 12.022 3.163 25.941 3.135 3.747 1.754 H38 A1B66 53 A1B66 H40 H21 H 0 1 N N N N N N 11.830 4.616 24.902 4.032 2.886 0.480 H40 A1B66 54 A1B66 H41 H22 H 0 1 N N N N N N 9.648 5.478 24.358 0.718 3.687 1.824 H41 A1B66 55 A1B66 H13 H23 H 0 1 N N N N N N 9.134 3.438 28.386 2.495 -0.657 -0.057 H13 A1B66 56 A1B66 H48 H24 H 0 1 N N N N N N 10.299 4.681 30.183 4.758 0.609 1.553 H48 A1B66 57 A1B66 H47 H25 H 0 1 N N N N N N 11.564 3.406 30.208 3.079 1.196 1.471 H47 A1B66 58 A1B66 H46 H26 H 0 1 N N N N N N 11.316 4.395 28.730 3.438 -0.375 2.228 H46 A1B66 59 A1B66 H51 H28 H 0 1 N N N N N N 8.156 1.998 32.738 6.605 -2.897 -0.790 H51 A1B66 60 A1B66 H52 H29 H 0 1 N N N N N N 6.857 3.235 32.644 7.647 -2.326 0.536 H52 A1B66 61 A1B66 H24 H31 H 0 1 N N N N N N 7.001 5.717 23.270 -2.044 2.793 1.915 H24 A1B66 62 A1B66 H29 H32 H 0 1 N N N N N N 1.510 3.789 22.790 -6.704 1.185 1.927 H29 A1B66 63 A1B66 H57 H33 H 0 1 N N N N N N 1.128 6.089 21.281 -7.347 -0.369 -1.062 H57 A1B66 64 A1B66 H58 H34 H 0 1 N N N N N N 1.914 5.021 20.069 -7.720 -0.956 0.580 H58 A1B66 65 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1B66 C37 C32 SING N N 1 A1B66 C32 C34 SING N N 2 A1B66 C32 C31 SING N N 3 A1B66 C32 C33 SING N N 4 A1B66 C34 C33 SING N N 5 A1B66 C34 C36 SING N N 6 A1B66 C31 C27 SING N N 7 A1B66 C36 C26 SING N N 8 A1B66 C27 C26 DOUB Y N 9 A1B66 C27 N28 SING Y N 10 A1B66 C26 C25 SING Y N 11 A1B66 N28 N30 SING Y N 12 A1B66 C25 N30 DOUB Y N 13 A1B66 C25 C22 SING N N 14 A1B66 N23 C22 SING Y N 15 A1B66 N23 C4 SING Y N 16 A1B66 C22 N21 DOUB Y N 17 A1B66 C4 C3 DOUB Y N 18 A1B66 C4 C5 SING Y N 19 A1B66 N21 C5 SING Y N 20 A1B66 C3 C2 SING Y N 21 A1B66 C5 C6 DOUB Y N 22 A1B66 C2 C1 SING N N 23 A1B66 C2 C7 DOUB Y N 24 A1B66 C6 C7 SING Y N 25 A1B66 C9 N8 SING N N 26 A1B66 C7 N8 SING N N 27 A1B66 N8 C10 SING N N 28 A1B66 C10 O11 DOUB N N 29 A1B66 C10 C12 SING N N 30 A1B66 C12 C14 SING N N 31 A1B66 C12 N15 SING N N 32 A1B66 C20 N15 SING N N 33 A1B66 C20 C19 SING N N 34 A1B66 N15 C16 SING N N 35 A1B66 C19 O18 SING N N 36 A1B66 C16 C17 SING N N 37 A1B66 O18 C17 SING N N 38 A1B66 C36 H62 SING N N 39 A1B66 C36 H61 SING N N 40 A1B66 C33 H59 SING N N 41 A1B66 C33 H60 SING N N 42 A1B66 C37 H63 SING N N 43 A1B66 C37 H65 SING N N 44 A1B66 C37 H64 SING N N 45 A1B66 C34 H35 SING N N 46 A1B66 C6 H42 SING N N 47 A1B66 C9 H45 SING N N 48 A1B66 C9 H44 SING N N 49 A1B66 C9 H43 SING N N 50 A1B66 C20 H55 SING N N 51 A1B66 C20 H56 SING N N 52 A1B66 C16 H49 SING N N 53 A1B66 C16 H50 SING N N 54 A1B66 C19 H54 SING N N 55 A1B66 C19 H53 SING N N 56 A1B66 C1 H39 SING N N 57 A1B66 C1 H38 SING N N 58 A1B66 C1 H40 SING N N 59 A1B66 C3 H41 SING N N 60 A1B66 C12 H13 SING N N 61 A1B66 C14 H48 SING N N 62 A1B66 C14 H47 SING N N 63 A1B66 C14 H46 SING N N 64 A1B66 C17 H51 SING N N 65 A1B66 C17 H52 SING N N 66 A1B66 N23 H24 SING N N 67 A1B66 N28 H29 SING N N 68 A1B66 C31 H57 SING N N 69 A1B66 C31 H58 SING N N 70 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1B66 SMILES ACDLabs 14.52 "CC(C(=O)N(C)c1cc2nc([NH]c2cc1C)c1n[NH]c2CC3(C)CC3Cc21)N1CCOCC1" A1B66 InChI InChI 1.06 "InChI=1S/C25H32N6O2/c1-14-9-18-19(11-21(14)30(4)24(32)15(2)31-5-7-33-8-6-31)27-23(26-18)22-17-10-16-12-25(16,3)13-20(17)28-29-22/h9,11,15-16H,5-8,10,12-13H2,1-4H3,(H,26,27)(H,28,29)/t15-,16+,25+/m0/s1" A1B66 InChIKey InChI 1.06 DVXKDRBZBOJVGG-JAUXOLPYSA-N A1B66 SMILES_CANONICAL CACTVS 3.385 "C[C@H](N1CCOCC1)C(=O)N(C)c2cc3nc([nH]c3cc2C)c4n[nH]c5C[C@@]6(C)C[C@H]6Cc45" A1B66 SMILES CACTVS 3.385 "C[CH](N1CCOCC1)C(=O)N(C)c2cc3nc([nH]c3cc2C)c4n[nH]c5C[C]6(C)C[CH]6Cc45" A1B66 SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "Cc1cc2c(cc1N(C)C(=O)[C@H](C)N3CCOCC3)nc([nH]2)c4c5c([nH]n4)C[C@]6(C[C@H]6C5)C" A1B66 SMILES "OpenEye OEToolkits" 3.1.0.0 "Cc1cc2c(cc1N(C)C(=O)C(C)N3CCOCC3)nc([nH]2)c4c5c([nH]n4)CC6(CC6C5)C" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1B66 "SYSTEMATIC NAME" ACDLabs 14.52 "(2S)-N-methyl-N-{6-methyl-2-[(4aS,5aR)-5a-methyl-1,4,4a,5,5a,6-hexahydrocyclopropa[f]indazol-3-yl]-1H-1,3-benzimidazol-5-yl}-2-(morpholin-4-yl)propanamide" A1B66 "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "(2~{S})-~{N}-[2-[(4~{a}~{S},5~{a}~{R})-5~{a}-methyl-4,4~{a},5,6-tetrahydro-1~{H}-cyclopropa[f]indazol-3-yl]-6-methyl-1~{H}-benzimidazol-5-yl]-~{N}-methyl-2-morpholin-4-yl-propanamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1B66 "Create component" 2025-03-26 RCSB A1B66 "Initial release" 2025-11-19 RCSB #