data_A1B6Z # _chem_comp.id A1B6Z _chem_comp.name "dimethyl D-glutamate" _chem_comp.type "D-peptide COOH carboxy terminus" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C7 H13 N O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-03-25 _chem_comp.pdbx_modified_date 2026-04-10 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 175.182 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1B6Z _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9NWR _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1B6Z C11 C1 C 0 1 N N N N N N -16.379 58.846 -1.435 4.130 1.560 0.142 C11 A1B6Z 1 A1B6Z C03 C2 C 0 1 N N N N N N -11.884 58.878 0.091 -0.034 -0.009 -0.058 C03 A1B6Z 2 A1B6Z C04 C3 C 0 1 N N N N N N -10.469 59.061 -0.392 -1.313 -0.623 0.513 C04 A1B6Z 3 A1B6Z C05 C4 C 0 1 N N N N N N -9.537 58.288 0.512 -2.507 0.149 0.014 C05 A1B6Z 4 A1B6Z C07 C5 C 0 1 N N N N N N -8.905 60.322 1.434 -4.847 0.576 -0.132 C07 A1B6Z 5 A1B6Z O10 O1 O 0 1 N N N N N N -15.288 58.099 -0.990 2.907 0.960 0.642 O10 A1B6Z 6 A1B6Z N N1 N 0 1 N N N N N N -12.675 56.887 -0.815 1.134 -2.162 -0.083 N A1B6Z 7 A1B6Z CA C6 C 0 1 N N R N N N -12.770 58.292 -0.972 1.179 -0.793 0.448 CA A1B6Z 8 A1B6Z C C7 C 0 1 N N N N N N -14.151 58.848 -0.747 2.444 -0.116 -0.014 C A1B6Z 9 A1B6Z O O2 O 0 1 N N N N N N -14.245 59.954 -0.365 3.040 -0.541 -0.974 O A1B6Z 10 A1B6Z O06 O3 O 0 1 N N N N N N -8.740 58.940 1.445 -3.744 -0.213 0.388 O06 A1B6Z 11 A1B6Z O08 O4 O 0 1 N N N N N N -9.494 57.126 0.418 -2.351 1.094 -0.724 O08 A1B6Z 12 A1B6Z H1 H1 H 0 1 N N N N N N -17.237 58.178 -1.604 4.394 2.418 0.760 H1 A1B6Z 13 A1B6Z H2 H2 H 0 1 N N N N N N -16.643 59.597 -0.676 4.936 0.827 0.176 H2 A1B6Z 14 A1B6Z H3 H3 H 0 1 N N N N N N -16.118 59.352 -2.376 3.980 1.887 -0.887 H3 A1B6Z 15 A1B6Z H4 H4 H 0 1 N N N N N N -12.287 59.857 0.389 -0.064 -0.052 -1.147 H4 A1B6Z 16 A1B6Z H5 H5 H 0 1 N N N N N N -11.878 58.204 0.960 0.045 1.030 0.262 H5 A1B6Z 17 A1B6Z H6 H6 H 0 1 N N N N N N -10.379 58.685 -1.422 -1.392 -1.662 0.192 H6 A1B6Z 18 A1B6Z H7 H7 H 0 1 N N N N N N -10.206 60.129 -0.367 -1.282 -0.580 1.601 H7 A1B6Z 19 A1B6Z H8 H8 H 0 1 N N N N N N -8.249 60.776 2.192 -5.789 0.178 0.247 H8 A1B6Z 20 A1B6Z H9 H9 H 0 1 N N N N N N -8.643 60.714 0.440 -4.735 1.612 0.189 H9 A1B6Z 21 A1B6Z H10 H10 H 0 1 N N N N N N -9.953 60.568 1.661 -4.845 0.531 -1.221 H10 A1B6Z 22 A1B6Z H11 H11 H 0 1 N N N N N N -11.733 56.596 -0.980 0.327 -2.658 0.265 H11 A1B6Z 23 A1B6Z H12 H12 H 0 1 N N N N N N -12.943 56.637 0.115 1.149 -2.158 -1.092 H12 A1B6Z 24 A1B6Z H14 H14 H 0 1 N N N N N N -12.407 58.599 -1.964 1.161 -0.825 1.538 H14 A1B6Z 25 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1B6Z C11 O10 SING N N 1 A1B6Z O10 C SING N N 2 A1B6Z CA N SING N N 3 A1B6Z CA C SING N N 4 A1B6Z CA C03 SING N N 5 A1B6Z C O DOUB N N 6 A1B6Z C04 C03 SING N N 7 A1B6Z C04 C05 SING N N 8 A1B6Z O08 C05 DOUB N N 9 A1B6Z C05 O06 SING N N 10 A1B6Z C07 O06 SING N N 11 A1B6Z C11 H1 SING N N 12 A1B6Z C11 H2 SING N N 13 A1B6Z C11 H3 SING N N 14 A1B6Z C03 H4 SING N N 15 A1B6Z C03 H5 SING N N 16 A1B6Z C04 H6 SING N N 17 A1B6Z C04 H7 SING N N 18 A1B6Z C07 H8 SING N N 19 A1B6Z C07 H9 SING N N 20 A1B6Z C07 H10 SING N N 21 A1B6Z N H11 SING N N 22 A1B6Z N H12 SING N N 23 A1B6Z CA H14 SING N N 24 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1B6Z SMILES ACDLabs 14.52 "NC(CCC(=O)OC)C(=O)OC" A1B6Z InChI InChI 1.06 "InChI=1S/C7H13NO4/c1-11-6(9)4-3-5(8)7(10)12-2/h5H,3-4,8H2,1-2H3/t5-/m1/s1" A1B6Z InChIKey InChI 1.06 YEJSPQZHMWGIGP-RXMQYKEDSA-N A1B6Z SMILES_CANONICAL CACTVS 3.385 "COC(=O)CC[C@@H](N)C(=O)OC" A1B6Z SMILES CACTVS 3.385 "COC(=O)CC[CH](N)C(=O)OC" A1B6Z SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "COC(=O)CC[C@H](C(=O)OC)N" A1B6Z SMILES "OpenEye OEToolkits" 3.1.0.0 "COC(=O)CCC(C(=O)OC)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1B6Z "SYSTEMATIC NAME" ACDLabs 14.52 "dimethyl D-glutamate" A1B6Z "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "dimethyl (2~{R})-2-azanylpentanedioate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1B6Z "Create component" 2025-03-25 RCSB A1B6Z "Modify PCM" 2025-03-25 RCSB A1B6Z "Initial release" 2026-04-15 RCSB # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1B6Z _pdbx_chem_comp_pcm.modified_residue_id ? _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Non-standard residue" _pdbx_chem_comp_pcm.position "Amino-acid backbone" _pdbx_chem_comp_pcm.polypeptide_position C-terminal _pdbx_chem_comp_pcm.comp_id_linking_atom ? _pdbx_chem_comp_pcm.modified_residue_id_linking_atom ? _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #