data_A1B79 # _chem_comp.id A1B79 _chem_comp.name "N,N-diethyl-2-(2-{[4-(2-fluoroethoxy)phenyl]methyl}-5-nitro-1H-1,3-benzimidazol-1-yl)ethan-1-amine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C22 H27 F N4 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-04-09 _chem_comp.pdbx_modified_date 2026-03-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 414.473 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1B79 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9O36 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1B79 C4 C1 C 0 1 Y N N N N N 153.692 168.980 124.708 2.317 1.421 -0.715 C4 A1B79 1 A1B79 C5 C2 C 0 1 Y N N N N N 152.343 168.590 124.610 3.304 2.395 -0.546 C5 A1B79 2 A1B79 C6 C3 C 0 1 Y N N N N N 151.590 168.286 125.767 4.229 2.262 0.451 C6 A1B79 3 A1B79 C11 C4 C 0 1 Y N N N N N 160.536 169.118 124.738 -3.475 1.927 -1.324 C11 A1B79 4 A1B79 C7 C5 C 0 1 Y N N N N N 155.705 169.591 124.414 0.651 0.168 -1.329 C7 A1B79 5 A1B79 C8 C6 C 0 1 N N N N N N 156.964 170.018 123.707 -0.551 -0.334 -2.088 C8 A1B79 6 A1B79 C9 C7 C 0 1 Y N N N N N 158.208 169.202 124.017 -1.806 0.215 -1.461 C9 A1B79 7 A1B79 C10 C8 C 0 1 Y N N N N N 159.376 169.856 124.448 -2.324 1.421 -1.896 C10 A1B79 8 A1B79 N1 N1 N 0 1 Y N N N N N 154.596 169.316 123.728 1.291 1.270 -1.591 N1 A1B79 9 A1B79 C3 C9 C 0 1 Y N N N N N 154.288 169.063 125.995 2.287 0.311 0.146 C3 A1B79 10 A1B79 C1 C10 C 0 1 Y N N N N N 152.209 168.377 127.036 4.200 1.166 1.301 C1 A1B79 11 A1B79 O1 O1 O 0 1 N N N N N N 161.734 167.083 124.908 -5.237 1.725 0.261 O1 A1B79 12 A1B79 C2 C11 C 0 1 Y N N N N N 153.556 168.764 127.156 3.235 0.192 1.153 C2 A1B79 13 A1B79 O2 O2 O 0 1 N N N N N N 149.546 167.699 126.693 5.304 4.262 -0.118 O2 A1B79 14 A1B79 C12 C12 C 0 1 Y N N N N N 160.551 167.717 124.603 -4.108 1.227 -0.307 C12 A1B79 15 A1B79 C13 C13 C 0 1 Y N N N N N 159.376 167.060 124.166 -3.587 0.017 0.127 C13 A1B79 16 A1B79 C14 C14 C 0 1 Y N N N N N 158.214 167.798 123.874 -2.439 -0.487 -0.452 C14 A1B79 17 A1B79 C15 C15 C 0 1 N N N N N N 162.145 167.032 126.267 -5.836 0.951 1.302 C15 A1B79 18 A1B79 C16 C16 C 0 1 N N N N N N 162.168 165.573 126.727 -7.087 1.666 1.816 C16 A1B79 19 A1B79 C17 C17 C 0 1 N N N N N N 156.595 169.683 126.811 0.782 -1.727 0.330 C17 A1B79 20 A1B79 C18 C18 C 0 1 N N N N N N 157.171 168.353 127.333 1.505 -2.888 -0.355 C18 A1B79 21 A1B79 C19 C19 C 0 1 N N N N N N 159.040 167.209 128.459 -0.350 -4.412 -0.044 C19 A1B79 22 A1B79 C20 C20 C 0 1 N N N N N N 158.389 166.143 129.351 -0.871 -5.502 0.895 C20 A1B79 23 A1B79 C21 C21 C 0 1 N N N N N N 159.097 169.691 128.296 1.906 -5.272 -0.220 C21 A1B79 24 A1B79 C22 C22 C 0 1 N N N N N N 159.972 169.888 129.546 3.257 -5.225 0.497 C22 A1B79 25 A1B79 F1 F1 F 0 1 N N N N N N 163.265 164.967 126.276 -8.045 1.720 0.797 F1 A1B79 26 A1B79 N2 N2 N 0 1 Y N N N N N 155.599 169.465 125.767 1.218 -0.461 -0.264 N2 A1B79 27 A1B79 N3 N3 N 1 1 N N N N N N 150.177 167.883 125.656 5.272 3.297 0.625 N3 A1B79 28 A1B79 N4 N4 N 0 1 N N N N N N 158.244 168.469 128.372 1.068 -4.157 0.242 N4 A1B79 29 A1B79 O3 O3 O -1 1 N N N N N N 149.698 167.756 124.536 6.100 3.184 1.512 O3 A1B79 30 A1B79 H3 H1 H 0 1 N N N N N N 151.877 168.522 123.638 3.336 3.252 -1.203 H3 A1B79 31 A1B79 H7 H2 H 0 1 N N N N N N 161.427 169.632 125.068 -3.879 2.869 -1.664 H7 A1B79 32 A1B79 H5 H3 H 0 1 N N N N N N 157.168 171.063 123.984 -0.488 -0.006 -3.125 H5 A1B79 33 A1B79 H4 H4 H 0 1 N N N N N N 156.781 169.955 122.624 -0.574 -1.423 -2.052 H4 A1B79 34 A1B79 H6 H5 H 0 1 N N N N N N 159.381 170.931 124.557 -1.828 1.968 -2.685 H6 A1B79 35 A1B79 H1 H6 H 0 1 N N N N N N 151.640 168.146 127.924 4.938 1.075 2.084 H1 A1B79 36 A1B79 H2 H7 H 0 1 N N N N N N 154.021 168.830 128.128 3.216 -0.659 1.818 H2 A1B79 37 A1B79 H8 H8 H 0 1 N N N N N N 159.371 165.986 124.056 -4.078 -0.530 0.919 H8 A1B79 38 A1B79 H9 H9 H 0 1 N N N N N N 157.323 167.288 123.539 -2.033 -1.429 -0.115 H9 A1B79 39 A1B79 H10 H10 H 0 1 N N N N N N 163.151 167.465 126.364 -6.111 -0.030 0.913 H10 A1B79 40 A1B79 H11 H11 H 0 1 N N N N N N 161.439 167.603 126.887 -5.125 0.830 2.120 H11 A1B79 41 A1B79 H13 H12 H 0 1 N N N N N N 162.159 165.538 127.826 -7.493 1.121 2.668 H13 A1B79 42 A1B79 H12 H13 H 0 1 N N N N N N 161.280 165.055 126.337 -6.826 2.679 2.123 H12 A1B79 43 A1B79 H14 H14 H 0 1 N N N N N N 157.415 170.290 126.401 -0.294 -1.839 0.197 H14 A1B79 44 A1B79 H15 H15 H 0 1 N N N N N N 156.124 170.220 127.647 1.018 -1.729 1.395 H15 A1B79 45 A1B79 H16 H16 H 0 1 N N N N N N 156.343 167.774 127.767 1.269 -2.886 -1.419 H16 A1B79 46 A1B79 H17 H17 H 0 1 N N N N N N 157.590 167.807 126.475 2.581 -2.775 -0.221 H17 A1B79 47 A1B79 H19 H18 H 0 1 N N N N N N 159.152 166.796 127.446 -0.460 -4.739 -1.077 H19 A1B79 48 A1B79 H18 H19 H 0 1 N N N N N N 160.032 167.450 128.869 -0.922 -3.497 0.110 H18 A1B79 49 A1B79 H22 H20 H 0 1 N N N N N N 159.023 165.244 129.372 -1.944 -5.626 0.748 H22 A1B79 50 A1B79 H20 H21 H 0 1 N N N N N N 158.278 166.537 130.372 -0.364 -6.442 0.677 H20 A1B79 51 A1B79 H21 H22 H 0 1 N N N N N N 157.399 165.883 128.949 -0.677 -5.216 1.928 H21 A1B79 52 A1B79 H23 H23 H 0 1 N N N N N N 159.754 169.607 127.417 2.063 -5.188 -1.295 H23 A1B79 53 A1B79 H24 H24 H 0 1 N N N N N N 158.444 170.569 128.183 1.409 -6.216 0.002 H24 A1B79 54 A1B79 H25 H25 H 0 1 N N N N N N 160.575 170.801 129.432 3.844 -6.102 0.224 H25 A1B79 55 A1B79 H27 H26 H 0 1 N N N N N N 159.328 169.983 130.433 3.794 -4.323 0.203 H27 A1B79 56 A1B79 H26 H27 H 0 1 N N N N N N 160.638 169.021 129.668 3.096 -5.217 1.575 H26 A1B79 57 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1B79 C8 C9 SING N N 1 A1B79 C8 C7 SING N N 2 A1B79 N1 C7 DOUB Y N 3 A1B79 N1 C4 SING Y N 4 A1B79 C14 C9 DOUB Y N 5 A1B79 C14 C13 SING Y N 6 A1B79 C9 C10 SING Y N 7 A1B79 C13 C12 DOUB Y N 8 A1B79 C7 N2 SING Y N 9 A1B79 C10 C11 DOUB Y N 10 A1B79 O3 N3 SING N N 11 A1B79 C12 C11 SING Y N 12 A1B79 C12 O1 SING N N 13 A1B79 C5 C4 DOUB Y N 14 A1B79 C5 C6 SING Y N 15 A1B79 C4 C3 SING Y N 16 A1B79 O1 C15 SING N N 17 A1B79 N3 C6 SING N N 18 A1B79 N3 O2 DOUB N N 19 A1B79 N2 C3 SING Y N 20 A1B79 N2 C17 SING N N 21 A1B79 C6 C1 DOUB Y N 22 A1B79 C3 C2 DOUB Y N 23 A1B79 C15 C16 SING N N 24 A1B79 F1 C16 SING N N 25 A1B79 C17 C18 SING N N 26 A1B79 C1 C2 SING Y N 27 A1B79 C18 N4 SING N N 28 A1B79 C21 N4 SING N N 29 A1B79 C21 C22 SING N N 30 A1B79 N4 C19 SING N N 31 A1B79 C19 C20 SING N N 32 A1B79 C5 H3 SING N N 33 A1B79 C11 H7 SING N N 34 A1B79 C8 H5 SING N N 35 A1B79 C8 H4 SING N N 36 A1B79 C10 H6 SING N N 37 A1B79 C1 H1 SING N N 38 A1B79 C2 H2 SING N N 39 A1B79 C13 H8 SING N N 40 A1B79 C14 H9 SING N N 41 A1B79 C15 H10 SING N N 42 A1B79 C15 H11 SING N N 43 A1B79 C16 H13 SING N N 44 A1B79 C16 H12 SING N N 45 A1B79 C17 H14 SING N N 46 A1B79 C17 H15 SING N N 47 A1B79 C18 H16 SING N N 48 A1B79 C18 H17 SING N N 49 A1B79 C19 H19 SING N N 50 A1B79 C19 H18 SING N N 51 A1B79 C20 H22 SING N N 52 A1B79 C20 H20 SING N N 53 A1B79 C20 H21 SING N N 54 A1B79 C21 H23 SING N N 55 A1B79 C21 H24 SING N N 56 A1B79 C22 H25 SING N N 57 A1B79 C22 H27 SING N N 58 A1B79 C22 H26 SING N N 59 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1B79 SMILES ACDLabs 14.52 "[O-][N+](=O)c1cc2nc(Cc3ccc(OCCF)cc3)n(CCN(CC)CC)c2cc1" A1B79 InChI InChI 1.06 "InChI=1S/C22H27FN4O3/c1-3-25(4-2)12-13-26-21-10-7-18(27(28)29)16-20(21)24-22(26)15-17-5-8-19(9-6-17)30-14-11-23/h5-10,16H,3-4,11-15H2,1-2H3" A1B79 InChIKey InChI 1.06 XCWWXPKOMYPTRP-UHFFFAOYSA-N A1B79 SMILES_CANONICAL CACTVS 3.385 "CCN(CC)CCn1c(Cc2ccc(OCCF)cc2)nc3cc(ccc13)[N+]([O-])=O" A1B79 SMILES CACTVS 3.385 "CCN(CC)CCn1c(Cc2ccc(OCCF)cc2)nc3cc(ccc13)[N+]([O-])=O" A1B79 SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "CCN(CC)CCn1c2ccc(cc2nc1Cc3ccc(cc3)OCCF)[N+](=O)[O-]" A1B79 SMILES "OpenEye OEToolkits" 3.1.0.0 "CCN(CC)CCn1c2ccc(cc2nc1Cc3ccc(cc3)OCCF)[N+](=O)[O-]" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1B79 "SYSTEMATIC NAME" ACDLabs 14.52 "N,N-diethyl-2-(2-{[4-(2-fluoroethoxy)phenyl]methyl}-5-nitro-1H-1,3-benzimidazol-1-yl)ethan-1-amine" A1B79 "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "~{N},~{N}-diethyl-2-[2-[[4-(2-fluoranylethoxy)phenyl]methyl]-5-nitro-benzimidazol-1-yl]ethanamine" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1B79 "Create component" 2025-04-09 RCSB A1B79 "Initial release" 2026-04-01 RCSB #