data_A1B8E # _chem_comp.id A1B8E _chem_comp.name "[(2S)-4-[7-(8-chloronaphthalen-1-yl)-2-{[(2S)-1-methylpyrrolidin-2-yl]methoxy}-5,6,7,8-tetrahydropyrido[3,4-d]pyrimidin-4-yl]-1-(2-fluoroprop-2-enoyl)piperazin-2-yl]acetonitrile" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C32 H37 Cl F N7 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-04-10 _chem_comp.pdbx_modified_date 2025-07-18 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 606.133 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1B8E _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9O55 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1B8E N3 N1 N 0 1 Y N N N N N 136.779 127.361 147.450 1.002 -1.987 -0.148 N3 A1B8E 1 A1B8E C4 C1 C 0 1 Y N N N N N 136.787 126.135 146.926 -0.251 -2.335 0.090 C4 A1B8E 2 A1B8E C6 C2 C 0 1 Y N N N N N 138.003 126.856 145.073 -0.975 -0.160 -0.123 C6 A1B8E 3 A1B8E C7 C3 C 0 1 N N N N N N 138.707 129.441 144.933 0.640 1.689 -0.628 C7 A1B8E 4 A1B8E C8 C4 C 0 1 N N N N N N 138.963 130.581 145.970 2.018 1.833 -1.276 C8 A1B8E 5 A1B8E C10 C5 C 0 1 N N N N N N 137.322 129.810 147.475 2.768 -0.376 -0.660 C10 A1B8E 6 A1B8E C13 C6 C 0 1 N N N N N N 139.419 126.668 141.442 -3.741 1.879 1.210 C13 A1B8E 7 A1B8E C15 C7 C 0 1 N N S N N N 139.906 124.593 142.645 -3.901 1.744 -1.306 C15 A1B8E 8 A1B8E C17 C8 C 0 1 N N N N N N 140.352 124.691 140.121 -5.919 1.867 0.082 C17 A1B8E 9 A1B8E C20 C9 C 0 1 Y N N N N N 137.566 132.355 147.088 4.297 1.411 -0.823 C20 A1B8E 10 A1B8E C21 C10 C 0 1 Y N N N N N 137.716 132.445 148.479 4.750 1.240 -2.114 C21 A1B8E 11 A1B8E C22 C11 C 0 1 Y N N N N N 137.665 133.663 149.162 6.051 1.589 -2.463 C22 A1B8E 12 A1B8E C24 C12 C 0 1 Y N N N N N 137.313 134.788 146.976 6.488 2.298 -0.217 C24 A1B8E 13 A1B8E C26 C13 C 0 1 Y N N N N N 137.107 136.081 146.314 7.354 2.831 0.754 C26 A1B8E 14 A1B8E C28 C14 C 0 1 Y N N N N N 136.990 134.983 144.198 5.613 2.656 2.392 C28 A1B8E 15 A1B8E C1 C15 C 0 1 Y N N N N N 138.007 128.235 145.627 0.342 0.236 -0.376 C1 A1B8E 16 A1B8E C12 C16 C 0 1 N N N N N N 138.202 126.897 142.403 -2.740 0.720 1.159 C12 A1B8E 17 A1B8E C16 C17 C 0 1 N N N N N N 138.742 124.912 143.616 -2.894 0.590 -1.258 C16 A1B8E 18 A1B8E C19 C18 C 0 1 N N R N N N 140.853 123.236 140.124 -6.585 2.080 1.417 C19 A1B8E 19 A1B8E C2 C19 C 0 1 Y N N N N N 137.391 128.434 146.810 1.329 -0.721 -0.385 C2 A1B8E 20 A1B8E C23 C20 C 0 1 Y N N N N N 137.462 134.840 148.404 6.911 2.108 -1.544 C23 A1B8E 21 A1B8E C25 C21 C 0 1 Y N N N N N 137.358 133.601 146.271 5.167 1.946 0.152 C25 A1B8E 22 A1B8E C27 C22 C 0 1 Y N N N N N 136.948 136.156 144.932 6.913 3.002 2.030 C27 A1B8E 23 A1B8E C29 C23 C 0 1 Y N N N N N 137.189 133.704 144.824 4.746 2.136 1.478 C29 A1B8E 24 A1B8E C31 C24 C 0 1 N N N N N N 136.454 123.750 147.133 0.551 -4.559 0.301 C31 A1B8E 25 A1B8E C32 C25 C 0 1 N N S N N N 135.824 122.736 148.087 0.032 -5.970 0.588 C32 A1B8E 26 A1B8E C34 C26 C 0 1 N N N N N N 133.513 122.804 147.829 -0.234 -7.619 -1.132 C34 A1B8E 27 A1B8E C35 C27 C 0 1 N N N N N N 134.176 121.603 147.020 0.656 -8.230 -0.021 C35 A1B8E 28 A1B8E C36 C28 C 0 1 N N N N N N 135.597 121.572 147.430 1.216 -6.958 0.667 C36 A1B8E 29 A1B8E C37 C29 C 0 1 N N N N N N 134.227 122.951 149.706 -2.196 -6.701 -0.033 C37 A1B8E 30 A1B8E C38 C30 C 0 1 N N N N N N 141.267 124.885 143.380 -3.167 3.055 -1.595 C38 A1B8E 31 A1B8E C39 C31 C 0 1 N N N N N N 142.038 122.929 139.575 -7.726 3.088 1.262 C39 A1B8E 32 A1B8E C40 C32 C 0 1 N N N N N N 141.668 123.759 144.363 -4.147 4.140 -1.759 C40 A1B8E 33 A1B8E F42 F1 F 0 1 N N N N N N 140.072 122.235 140.700 -7.098 0.864 1.882 F42 A1B8E 34 A1B8E N11 N2 N 0 1 N N N N N N 138.616 126.405 143.783 -1.999 0.773 -0.108 N11 A1B8E 35 A1B8E N14 N3 N 0 1 N N N N N N 139.888 125.327 141.408 -4.574 1.831 -0.001 N14 A1B8E 36 A1B8E N33 N4 N 0 1 N N N N N N 134.416 123.282 148.601 -0.837 -6.419 -0.515 N33 A1B8E 37 A1B8E N41 N5 N 0 1 N N N N N N 141.972 122.918 145.101 -4.904 4.978 -1.886 N41 A1B8E 38 A1B8E N5 N6 N 0 1 Y N N N N N 137.390 125.899 145.767 -1.229 -1.445 0.103 N5 A1B8E 39 A1B8E N9 N7 N 0 1 N N N N N N 137.672 130.961 146.572 2.991 1.063 -0.484 N9 A1B8E 40 A1B8E O18 O1 O 0 1 N N N N N N 140.331 125.319 139.094 -6.593 1.727 -0.916 O18 A1B8E 41 A1B8E O30 O2 O 0 1 N N N N N N 136.142 125.068 147.617 -0.541 -3.637 0.326 O30 A1B8E 42 A1B8E CL1 CL1 CL 0 0 N N N N N N 137.178 132.401 143.639 3.131 1.712 1.951 CL1 A1B8E 43 A1B8E H1 H1 H 0 1 N N N N N N 139.667 129.111 144.511 0.626 2.231 0.318 H1 A1B8E 44 A1B8E H2 H2 H 0 1 N N N N N N 138.063 129.821 144.126 -0.117 2.104 -1.293 H2 A1B8E 45 A1B8E H3 H3 H 0 1 N N N N N N 139.647 130.224 146.754 1.986 1.444 -2.294 H3 A1B8E 46 A1B8E H4 H4 H 0 1 N N N N N N 139.407 131.451 145.464 2.308 2.883 -1.291 H4 A1B8E 47 A1B8E H5 H5 H 0 1 N N N N N N 138.021 129.816 148.325 3.409 -0.927 0.029 H5 A1B8E 48 A1B8E H6 H6 H 0 1 N N N N N N 136.297 129.962 147.843 3.016 -0.654 -1.684 H6 A1B8E 49 A1B8E H7 H7 H 0 1 N N N N N N 140.246 127.315 141.771 -4.372 1.780 2.093 H7 A1B8E 50 A1B8E H8 H8 H 0 1 N N N N N N 139.114 126.953 140.424 -3.203 2.826 1.250 H8 A1B8E 51 A1B8E H9 H9 H 0 1 N N N N N N 139.874 123.516 142.426 -4.636 1.556 -2.089 H9 A1B8E 52 A1B8E H10 H10 H 0 1 N N N N N N 137.877 131.539 149.044 4.087 0.831 -2.862 H10 A1B8E 53 A1B8E H11 H11 H 0 1 N N N N N N 137.777 133.704 150.235 6.384 1.446 -3.480 H11 A1B8E 54 A1B8E H12 H12 H 0 1 N N N N N N 137.078 136.985 146.905 8.365 3.103 0.488 H12 A1B8E 55 A1B8E H13 H13 H 0 1 N N N N N N 136.870 135.030 143.126 5.288 2.801 3.412 H13 A1B8E 56 A1B8E H14 H14 H 0 1 N N N N N N 137.951 127.967 142.444 -2.043 0.804 1.992 H14 A1B8E 57 A1B8E H15 H15 H 0 1 N N N N N N 137.329 126.330 142.047 -3.277 -0.227 1.227 H15 A1B8E 58 A1B8E H16 H16 H 0 1 N N N N N N 137.804 124.509 143.207 -3.428 -0.355 -1.156 H16 A1B8E 59 A1B8E H17 H17 H 0 1 N N N N N N 138.944 124.450 144.594 -2.309 0.579 -2.177 H17 A1B8E 60 A1B8E H18 H18 H 0 1 N N N N N N 137.418 135.794 148.908 7.917 2.373 -1.834 H18 A1B8E 61 A1B8E H19 H19 H 0 1 N N N N N N 136.795 137.108 144.444 7.581 3.412 2.773 H19 A1B8E 62 A1B8E H20 H20 H 0 1 N N N N N N 136.043 123.617 146.122 1.281 -4.279 1.060 H20 A1B8E 63 A1B8E H21 H21 H 0 1 N N N N N N 137.545 123.610 147.107 1.022 -4.538 -0.682 H21 A1B8E 64 A1B8E H22 H22 H 0 1 N N N N N N 136.483 122.595 148.957 -0.524 -5.977 1.525 H22 A1B8E 65 A1B8E H23 H23 H 0 1 N N N N N N 133.163 123.580 147.133 0.373 -7.339 -1.993 H23 A1B8E 66 A1B8E H24 H24 H 0 1 N N N N N N 132.665 122.435 148.424 -1.010 -8.324 -1.429 H24 A1B8E 67 A1B8E H25 H25 H 0 1 N N N N N N 134.094 121.780 145.937 0.060 -8.821 0.675 H25 A1B8E 68 A1B8E H26 H26 H 0 1 N N N N N N 133.684 120.653 147.274 1.460 -8.828 -0.449 H26 A1B8E 69 A1B8E H27 H27 H 0 1 N N N N N N 135.784 120.716 148.095 2.077 -6.572 0.122 H27 A1B8E 70 A1B8E H28 H28 H 0 1 N N N N N N 136.248 121.499 146.546 1.476 -7.164 1.706 H28 A1B8E 71 A1B8E H29 H29 H 0 1 N N N N N N 135.011 123.370 150.354 -2.622 -5.797 0.403 H29 A1B8E 72 A1B8E H30 H30 H 0 1 N N N N N N 133.244 123.318 150.036 -2.816 -7.030 -0.867 H30 A1B8E 73 A1B8E H31 H31 H 0 1 N N N N N N 134.248 121.853 149.768 -2.157 -7.485 0.723 H31 A1B8E 74 A1B8E H32 H32 H 0 1 N N N N N N 142.059 124.991 142.624 -2.501 3.289 -0.764 H32 A1B8E 75 A1B8E H33 H33 H 0 1 N N N N N N 141.169 125.825 143.943 -2.583 2.951 -2.509 H33 A1B8E 76 A1B8E H34 H34 H 0 1 N N N N N N 142.220 121.849 139.674 -8.455 2.705 0.549 H34 A1B8E 77 A1B8E H35 H35 H 0 1 N N N N N N 142.030 123.203 138.510 -8.208 3.242 2.227 H35 A1B8E 78 A1B8E H36 H36 H 0 1 N N N N N N 140.360 123.064 139.156 -5.856 2.463 2.130 H36 A1B8E 79 A1B8E H37 H37 H 0 1 N N N N N N 142.836 123.484 140.091 -7.326 4.035 0.900 H37 A1B8E 80 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1B8E O18 C17 DOUB N N 1 A1B8E C39 C19 SING N N 2 A1B8E C17 C19 SING N N 3 A1B8E C17 N14 SING N N 4 A1B8E C19 F42 SING N N 5 A1B8E N14 C13 SING N N 6 A1B8E N14 C15 SING N N 7 A1B8E C13 C12 SING N N 8 A1B8E C12 N11 SING N N 9 A1B8E C15 C38 SING N N 10 A1B8E C15 C16 SING N N 11 A1B8E C38 C40 SING N N 12 A1B8E C16 N11 SING N N 13 A1B8E CL1 C29 SING N N 14 A1B8E N11 C6 SING N N 15 A1B8E C28 C29 DOUB Y N 16 A1B8E C28 C27 SING Y N 17 A1B8E C40 N41 TRIP N N 18 A1B8E C29 C25 SING Y N 19 A1B8E C27 C26 DOUB Y N 20 A1B8E C7 C1 SING N N 21 A1B8E C7 C8 SING N N 22 A1B8E C6 C1 DOUB Y N 23 A1B8E C6 N5 SING Y N 24 A1B8E C1 C2 SING Y N 25 A1B8E N5 C4 DOUB Y N 26 A1B8E C8 N9 SING N N 27 A1B8E C25 C24 DOUB Y N 28 A1B8E C25 C20 SING Y N 29 A1B8E C26 C24 SING Y N 30 A1B8E N9 C20 SING N N 31 A1B8E N9 C10 SING N N 32 A1B8E C2 N3 DOUB Y N 33 A1B8E C2 C10 SING N N 34 A1B8E C4 N3 SING Y N 35 A1B8E C4 O30 SING N N 36 A1B8E C24 C23 SING Y N 37 A1B8E C35 C36 SING N N 38 A1B8E C35 C34 SING N N 39 A1B8E C20 C21 DOUB Y N 40 A1B8E C31 O30 SING N N 41 A1B8E C31 C32 SING N N 42 A1B8E C36 C32 SING N N 43 A1B8E C34 N33 SING N N 44 A1B8E C32 N33 SING N N 45 A1B8E C23 C22 DOUB Y N 46 A1B8E C21 C22 SING Y N 47 A1B8E N33 C37 SING N N 48 A1B8E C7 H1 SING N N 49 A1B8E C7 H2 SING N N 50 A1B8E C8 H3 SING N N 51 A1B8E C8 H4 SING N N 52 A1B8E C10 H5 SING N N 53 A1B8E C10 H6 SING N N 54 A1B8E C13 H7 SING N N 55 A1B8E C13 H8 SING N N 56 A1B8E C15 H9 SING N N 57 A1B8E C21 H10 SING N N 58 A1B8E C22 H11 SING N N 59 A1B8E C26 H12 SING N N 60 A1B8E C28 H13 SING N N 61 A1B8E C12 H14 SING N N 62 A1B8E C12 H15 SING N N 63 A1B8E C16 H16 SING N N 64 A1B8E C16 H17 SING N N 65 A1B8E C23 H18 SING N N 66 A1B8E C27 H19 SING N N 67 A1B8E C31 H20 SING N N 68 A1B8E C31 H21 SING N N 69 A1B8E C32 H22 SING N N 70 A1B8E C34 H23 SING N N 71 A1B8E C34 H24 SING N N 72 A1B8E C35 H25 SING N N 73 A1B8E C35 H26 SING N N 74 A1B8E C36 H27 SING N N 75 A1B8E C36 H28 SING N N 76 A1B8E C37 H29 SING N N 77 A1B8E C37 H30 SING N N 78 A1B8E C37 H31 SING N N 79 A1B8E C38 H32 SING N N 80 A1B8E C38 H33 SING N N 81 A1B8E C39 H34 SING N N 82 A1B8E C39 H35 SING N N 83 A1B8E C19 H36 SING N N 84 A1B8E C39 H37 SING N N 85 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1B8E SMILES ACDLabs 14.52 "CN1CCCC1COc1nc2CN(CCc2c(n1)N1CC(CC#N)N(CC1)C(=O)C(C)F)c1cccc2cccc(Cl)c21" A1B8E InChI InChI 1.06 "InChI=1S/C32H37ClFN7O2/c1-21(34)31(42)41-17-16-40(18-23(41)11-13-35)30-25-12-15-39(28-10-4-7-22-6-3-9-26(33)29(22)28)19-27(25)36-32(37-30)43-20-24-8-5-14-38(24)2/h3-4,6-7,9-10,21,23-24H,5,8,11-12,14-20H2,1-2H3/t21-,23+,24+/m1/s1" A1B8E InChIKey InChI 1.06 BQFJNAAUAQEWHZ-NHTMILBNSA-N A1B8E SMILES_CANONICAL CACTVS 3.385 "C[C@@H](F)C(=O)N1CCN(C[C@@H]1CC#N)c2nc(OC[C@@H]3CCCN3C)nc4CN(CCc24)c5cccc6cccc(Cl)c56" A1B8E SMILES CACTVS 3.385 "C[CH](F)C(=O)N1CCN(C[CH]1CC#N)c2nc(OC[CH]3CCCN3C)nc4CN(CCc24)c5cccc6cccc(Cl)c56" A1B8E SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "CC(C(=O)N1CCN(C[C@@H]1CC#N)c2c3c(nc(n2)OC[C@@H]4CCCN4C)CN(CC3)c5cccc6c5c(ccc6)Cl)F" A1B8E SMILES "OpenEye OEToolkits" 3.1.0.0 "CC(C(=O)N1CCN(CC1CC#N)c2c3c(nc(n2)OCC4CCCN4C)CN(CC3)c5cccc6c5c(ccc6)Cl)F" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1B8E "SYSTEMATIC NAME" ACDLabs 14.52 "{(2S)-4-[7-(8-chloronaphthalen-1-yl)-2-{[(2S)-1-methylpyrrolidin-2-yl]methoxy}-5,6,7,8-tetrahydropyrido[3,4-d]pyrimidin-4-yl]-1-[(2R)-2-fluoropropanoyl]piperazin-2-yl}acetonitrile" A1B8E "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "2-[(2~{S})-4-[7-(8-chloranylnaphthalen-1-yl)-2-[[(2~{S})-1-methylpyrrolidin-2-yl]methoxy]-6,8-dihydro-5~{H}-pyrido[3,4-d]pyrimidin-4-yl]-1-(2-fluoranylpropanoyl)piperazin-2-yl]ethanenitrile" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1B8E "Create component" 2025-04-10 RCSB A1B8E "Initial release" 2025-07-23 RCSB #